Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 112 |
| Acc16I | TGCGCA | 1 cut(s) | 648 |
| Acc36I | ACCTGC | 2 cut(s) | 112, 892 |
| Acc65I | GGTACC | 1 cut(s) | 678 |
| AccB1I | GGYRCC | 1 cut(s) | 678 |
| AccII | CGCG | 1 cut(s) | 367 |
| AciI | CCGC | 1 cut(s) | 107 |
| AcsI | RAATTY | 2 cut(s) | 16, 352 |
| AcuI | CTGAAG | 1 cut(s) | 831 |
| AfaI | GTAC | 3 cut(s) | 6, 667, 680 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 106, 761 |
| AgsI | TTSAA | 3 cut(s) | 494, 517, 908 |
| AjnI | CCWGG | 1 cut(s) | 313 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 804, 836 |
| AluBI | AGCT | 8 cut(s) | 28, 141, 376, 638, 698, 882, 926, 941 |
| AluI | AGCT | 8 cut(s) | 28, 141, 376, 638, 698, 882, 926, 941 |
| Alw21I | GWGCWC | 3 cut(s) | 30, 481, 834 |
| Alw26I | GTCTC | 3 cut(s) | 26, 261, 508 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 41, 944 |
| Ama87I | CYCGRG | 2 cut(s) | 29, 472 |
| AoxI | GGCC | 3 cut(s) | 11, 342, 462 |
| ApeKI | GCWGC | 1 cut(s) | 938 |
| ApoI | RAATTY | 2 cut(s) | 16, 352 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 423, 455 |
| AseI | ATTAAT | 1 cut(s) | 911 |
| Asp718I | GGTACC | 1 cut(s) | 678 |
| AspLEI | GCGC | 2 cut(s) | 555, 649 |
| AspS9I | GGNCC | 2 cut(s) | 342, 462 |
| AsuC2I | CCSGG | 1 cut(s) | 762 |
| AsuHPI | GGTGA | 2 cut(s) | 469, 751 |
| AvaI | CYCGRG | 2 cut(s) | 29, 472 |
| AxyI | CCTNAGG | 1 cut(s) | 723 |
| BanI | GGYRCC | 1 cut(s) | 678 |
| BanII | GRGCYC | 1 cut(s) | 30 |
| Bbv12I | GWGCWC | 3 cut(s) | 30, 481, 834 |
| BbvI | GCAGC | 1 cut(s) | 950 |
| BccI | CCATC | 2 cut(s) | 420, 473 |
| BciT130I | CCWGG | 1 cut(s) | 315 |
| BclI | TGATCA | 1 cut(s) | 231 |
| BcnI | CCSGG | 1 cut(s) | 762 |
| BcoDI | GTCTC | 3 cut(s) | 26, 261, 508 |
| BfaI | CTAG | 1 cut(s) | 63 |
| BfmI | CTRYAG | 1 cut(s) | 945 |
| BfuAI | ACCTGC | 2 cut(s) | 112, 892 |
| BglII | AGATCT | 1 cut(s) | 65 |
| BisI | GCNGC | 1 cut(s) | 939 |
| BlsI | GCNGC | 1 cut(s) | 940 |
| BmcAI | AGTACT | 1 cut(s) | 667 |
| Bme1390I | CCNGG | 2 cut(s) | 315, 762 |
| BmeT110I | CYCGRG | 2 cut(s) | 29, 472 |
| BmgT120I | GGNCC | 2 cut(s) | 342, 462 |
| BmiI | GGNNCC | 1 cut(s) | 680 |
| BmrFI | CCNGG | 2 cut(s) | 315, 762 |
| BmsI | GCATC | 3 cut(s) | 64, 86, 522 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 360, 392 |
| BpuEI | CTTGAG | 4 cut(s) | 127, 557, 684, 828 |
| BpuMI | CCSGG | 1 cut(s) | 762 |
| BsaI | GGTCTC | 1 cut(s) | 261 |
| BsaJI | CCNNGG | 2 cut(s) | 261, 761 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 331, 361 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 106, 761 |
| Bse21I | CCTNAGG | 1 cut(s) | 723 |
| BseBI | CCWGG | 1 cut(s) | 315 |
| BseDI | CCNNGG | 2 cut(s) | 261, 761 |
| BseGI | GGATG | 5 cut(s) | 77, 79, 257, 412, 537 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 106, 761 |
| BseMII | CTCAG | 2 cut(s) | 151, 552 |
| BseRI | GAGGAG | 1 cut(s) | 744 |
| BseXI | GCAGC | 1 cut(s) | 950 |
| Bsh1236I | CGCG | 1 cut(s) | 367 |
| BshFI | GGCC | 3 cut(s) | 13, 344, 464 |
| BshNI | GGYRCC | 1 cut(s) | 678 |
| BsiHKAI | GWGCWC | 3 cut(s) | 30, 481, 834 |
| BsiHKCI | CYCGRG | 2 cut(s) | 29, 472 |
| BsiSI | CCGG | 1 cut(s) | 761 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 106, 761 |
| BsmAI | GTCTC | 3 cut(s) | 26, 261, 508 |
| BsnI | GGCC | 3 cut(s) | 13, 344, 464 |
| Bso31I | GGTCTC | 1 cut(s) | 261 |
| BsoBI | CYCGRG | 2 cut(s) | 29, 472 |
| Bsp1286I | GDGCHC | 3 cut(s) | 30, 481, 834 |
| Bsp143I | GATC | 4 cut(s) | 43, 65, 157, 231 |
| BspACI | CCGC | 1 cut(s) | 107 |
| BspANI | GGCC | 3 cut(s) | 13, 344, 464 |
| BspCNI | CTCAG | 2 cut(s) | 150, 553 |
| BspFNI | CGCG | 1 cut(s) | 367 |
| BspLI | GGNNCC | 1 cut(s) | 680 |
| BspMAI | CTGCAG | 1 cut(s) | 949 |
| BspMI | ACCTGC | 2 cut(s) | 112, 892 |
| BspT107I | GGYRCC | 1 cut(s) | 678 |
| BspTNI | GGTCTC | 1 cut(s) | 261 |
| BssECI | CCNNGG | 2 cut(s) | 261, 761 |
| BssMI | GATC | 4 cut(s) | 43, 65, 157, 231 |
| Bst2UI | CCWGG | 1 cut(s) | 315 |
| Bst4CI | ACNGT | 2 cut(s) | 37, 624 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 944 |
| BstC8I | GCNNGC | 3 cut(s) | 369, 448, 696 |
| BstDEI | CTNAG | 5 cut(s) | 137, 384, 561, 723, 856 |
| BstDSI | CCRYGG | 1 cut(s) | 261 |
| BstF5I | GGATG | 5 cut(s) | 77, 79, 257, 412, 537 |
| BstFNI | CGCG | 1 cut(s) | 367 |
| BstHHI | GCGC | 2 cut(s) | 555, 649 |
| BstKTI | GATC | 4 cut(s) | 46, 68, 160, 234 |
| BstMAI | GTCTC | 3 cut(s) | 26, 261, 508 |
| BstMBI | GATC | 4 cut(s) | 43, 65, 157, 231 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 364, 373, 644, 923, 944, 953 |
| BstNI | CCWGG | 1 cut(s) | 315 |
| BstNSI | RCATGY | 2 cut(s) | 450, 842 |
| BstSCI | CCNGG | 2 cut(s) | 313, 760 |
| BstSFI | CTRYAG | 1 cut(s) | 945 |
| BstUI | CGCG | 1 cut(s) | 367 |
| BstV1I | GCAGC | 1 cut(s) | 950 |
| BstX2I | RGATCY | 1 cut(s) | 65 |
| BstYI | RGATCY | 1 cut(s) | 65 |
| Bsu36I | CCTNAGG | 1 cut(s) | 723 |
| BsuRI | GGCC | 3 cut(s) | 13, 344, 464 |
| BtgI | CCRYGG | 1 cut(s) | 261 |
| BtsCI | GGATG | 5 cut(s) | 77, 79, 257, 412, 537 |
| BtsI | GCAGTG | 1 cut(s) | 552 |
| BtsIMutI | CAGTG | 4 cut(s) | 552, 558, 620, 807 |
| BveI | ACCTGC | 2 cut(s) | 112, 892 |
| Cac8I | GCNNGC | 3 cut(s) | 369, 448, 696 |
| CaiI | CAGNNNCTG | 2 cut(s) | 41, 944 |
| CfoI | GCGC | 2 cut(s) | 555, 649 |
| Cfr13I | GGNCC | 2 cut(s) | 342, 462 |
| Csp6I | GTAC | 3 cut(s) | 5, 666, 679 |
| CviAII | CATG | 5 cut(s) | 447, 675, 683, 839, 875 |
| CviQI | GTAC | 3 cut(s) | 5, 666, 679 |
| DdeI | CTNAG | 5 cut(s) | 137, 384, 561, 723, 856 |
| DpnI | GATC | 4 cut(s) | 45, 67, 159, 233 |
| DpnII | GATC | 4 cut(s) | 43, 65, 157, 231 |
| DraI | TTTAAA | 1 cut(s) | 523 |
| Ecl136II | GAGCTC | 1 cut(s) | 28 |
| Eco24I | GRGCYC | 1 cut(s) | 30 |
| Eco31I | GGTCTC | 1 cut(s) | 261 |
| Eco53kI | GAGCTC | 1 cut(s) | 28 |
| Eco57I | CTGAAG | 1 cut(s) | 831 |
| Eco81I | CCTNAGG | 1 cut(s) | 723 |
| Eco88I | CYCGRG | 2 cut(s) | 29, 472 |
| EcoICRI | GAGCTC | 1 cut(s) | 28 |
| EcoO109I | RGGNCCY | 1 cut(s) | 342 |
| EcoRII | CCWGG | 1 cut(s) | 313 |
| EcoT22I | ATGCAT | 1 cut(s) | 79 |
| EcoT38I | GRGCYC | 1 cut(s) | 30 |
| FaeI | CATG | 5 cut(s) | 450, 678, 686, 842, 878 |
| FatI | CATG | 5 cut(s) | 446, 674, 682, 838, 874 |
| FbaI | TGATCA | 1 cut(s) | 231 |
| Fnu4HI | GCNGC | 1 cut(s) | 939 |
| FokI | GGATG | 5 cut(s) | 64, 86, 244, 399, 544 |
| FriOI | GRGCYC | 1 cut(s) | 30 |
| Fsp4HI | GCNGC | 1 cut(s) | 939 |
| FspBI | CTAG | 1 cut(s) | 63 |
| FspI | TGCGCA | 1 cut(s) | 648 |
| GlaI | GCGC | 2 cut(s) | 554, 648 |
| GluI | GCNGC | 1 cut(s) | 939 |
| HaeIII | GGCC | 3 cut(s) | 13, 344, 464 |
| HapII | CCGG | 1 cut(s) | 761 |
| HhaI | GCGC | 2 cut(s) | 555, 649 |
| Hin1II | CATG | 5 cut(s) | 450, 678, 686, 842, 878 |
| Hin6I | GCGC | 2 cut(s) | 553, 647 |
| HinP1I | GCGC | 2 cut(s) | 553, 647 |
| HinfI | GANTC | 1 cut(s) | 147 |
| HpaII | CCGG | 1 cut(s) | 761 |
| HphI | GGTGA | 2 cut(s) | 469, 751 |
| Hpy188I | TCNGA | 2 cut(s) | 43, 836 |
| Hpy188III | TCNNGA | 5 cut(s) | 31, 144, 472, 571, 701 |
| HpyAV | CCTTC | 2 cut(s) | 535, 806 |
| HpyCH4III | ACNGT | 2 cut(s) | 37, 624 |
| HpyCH4IV | ACGT | 1 cut(s) | 850 |
| HpyCH4V | TGCA | 9 cut(s) | 54, 77, 446, 663, 732, 890, 938, 947, 963 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 364, 373, 644, 923, 944, 953 |
| HpyF3I | CTNAG | 5 cut(s) | 137, 384, 561, 723, 856 |
| HpySE526I | ACGT | 1 cut(s) | 850 |
| Hsp92II | CATG | 5 cut(s) | 450, 678, 686, 842, 878 |
| HspAI | GCGC | 2 cut(s) | 553, 647 |
| KpnI | GGTACC | 1 cut(s) | 682 |
| Ksp22I | TGATCA | 1 cut(s) | 231 |
| Kzo9I | GATC | 4 cut(s) | 43, 65, 157, 231 |
| LmnI | GCTCC | 3 cut(s) | 484, 757, 837 |
| Lsp1109I | GCAGC | 1 cut(s) | 950 |
| LweI | GCATC | 3 cut(s) | 64, 86, 522 |
| MaeI | CTAG | 1 cut(s) | 63 |
| MaeII | ACGT | 1 cut(s) | 850 |
| MaeIII | GTNAC | 1 cut(s) | 191 |
| MalI | GATC | 4 cut(s) | 45, 67, 159, 233 |
| MboI | GATC | 4 cut(s) | 43, 65, 157, 231 |
| MboII | GAAGA | 3 cut(s) | 434, 460, 616 |
| MflI | RGATCY | 1 cut(s) | 65 |
| MhlI | GDGCHC | 3 cut(s) | 30, 481, 834 |
| MluCI | AATT | 9 cut(s) | 16, 328, 352, 575, 642, 767, 773, 908, 958 |
| MlyI | GAGTC | 1 cut(s) | 156 |
| MmeI | TCCRAC | 2 cut(s) | 825, 859 |
| MnlI | CCTC | 9 cut(s) | 144, 177, 262, 313, 333, 453, 735, 765, 809 |
| Mph1103I | ATGCAT | 1 cut(s) | 79 |
| MseI | TTAA | 5 cut(s) | 522, 770, 776, 911, 976 |
| MslI | CAYNNNNRTG | 1 cut(s) | 417 |
| MspI | CCGG | 1 cut(s) | 761 |
| MspR9I | CCNGG | 2 cut(s) | 315, 762 |
| MvaI | CCWGG | 1 cut(s) | 315 |
| MvnI | CGCG | 1 cut(s) | 367 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 364, 373, 644, 923, 944, 953 |
| NciI | CCSGG | 1 cut(s) | 762 |
| NdeII | GATC | 4 cut(s) | 43, 65, 157, 231 |
| NlaIII | CATG | 5 cut(s) | 450, 678, 686, 842, 878 |
| NlaIV | GGNNCC | 1 cut(s) | 680 |
| NsbI | TGCGCA | 1 cut(s) | 648 |
| NsiI | ATGCAT | 1 cut(s) | 79 |
| NspI | RCATGY | 2 cut(s) | 450, 842 |
| PaeI | GCATGC | 1 cut(s) | 450 |
| PaeR7I | CTCGAG | 2 cut(s) | 29, 472 |
| PaqCI | CACCTGC | 1 cut(s) | 112 |
| PkrI | GCNGC | 1 cut(s) | 940 |
| PleI | GAGTC | 1 cut(s) | 155 |
| PpsI | GAGTC | 1 cut(s) | 155 |
| PshBI | ATTAAT | 1 cut(s) | 911 |
| Psp124BI | GAGCTC | 1 cut(s) | 30 |
| Psp6I | CCWGG | 1 cut(s) | 313 |
| PspGI | CCWGG | 1 cut(s) | 313 |
| PspN4I | GGNNCC | 1 cut(s) | 680 |
| PspPI | GGNCC | 2 cut(s) | 342, 462 |
| PstI | CTGCAG | 1 cut(s) | 949 |
| PstNI | CAGNNNCTG | 2 cut(s) | 41, 944 |
| PsuI | RGATCY | 1 cut(s) | 65 |
| RsaI | GTAC | 3 cut(s) | 6, 667, 680 |
| RsaNI | GTAC | 3 cut(s) | 5, 666, 679 |
| RseI | CAYNNNNRTG | 1 cut(s) | 417 |
| SacI | GAGCTC | 1 cut(s) | 30 |
| SaqAI | TTAA | 5 cut(s) | 522, 770, 776, 911, 976 |
| SatI | GCNGC | 1 cut(s) | 939 |
| Sau3AI | GATC | 4 cut(s) | 43, 65, 157, 231 |
| Sau96I | GGNCC | 2 cut(s) | 342, 462 |
| ScaI | AGTACT | 1 cut(s) | 667 |
| SchI | GAGTC | 1 cut(s) | 156 |
| ScrFI | CCNGG | 2 cut(s) | 315, 762 |
| SduI | GDGCHC | 3 cut(s) | 30, 481, 834 |
| SfaNI | GCATC | 3 cut(s) | 64, 86, 522 |
| SfcI | CTRYAG | 1 cut(s) | 945 |
| Sfr274I | CTCGAG | 2 cut(s) | 29, 472 |
| SlaI | CTCGAG | 2 cut(s) | 29, 472 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 417 |
| SmlI | CTYRAG | 6 cut(s) | 29, 142, 472, 536, 699, 843 |
| SmoI | CTYRAG | 6 cut(s) | 29, 142, 472, 536, 699, 843 |
| SphI | GCATGC | 1 cut(s) | 450 |
| Sse9I | AATT | 9 cut(s) | 16, 328, 352, 575, 642, 767, 773, 908, 958 |
| SsiI | CCGC | 1 cut(s) | 107 |
| SspMI | CTAG | 1 cut(s) | 63 |
| SstI | GAGCTC | 1 cut(s) | 30 |
| StyD4I | CCNGG | 2 cut(s) | 313, 760 |
| TaaI | ACNGT | 2 cut(s) | 37, 624 |
| TaiI | ACGT | 1 cut(s) | 853 |
| TaqI | TCGA | 3 cut(s) | 30, 160, 473 |
| TasI | AATT | 9 cut(s) | 16, 328, 352, 575, 642, 767, 773, 908, 958 |
| TatI | WGTACW | 1 cut(s) | 665 |
| Tru1I | TTAA | 5 cut(s) | 522, 770, 776, 911, 976 |
| Tru9I | TTAA | 5 cut(s) | 522, 770, 776, 911, 976 |
| TscAI | CASTG | 4 cut(s) | 552, 565, 627, 814 |
| TseI | GCWGC | 1 cut(s) | 938 |
| TspDTI | ATGAA | 1 cut(s) | 435 |
| TspRI | CASTG | 4 cut(s) | 552, 565, 627, 814 |
| VspI | ATTAAT | 1 cut(s) | 911 |
| XapI | RAATTY | 2 cut(s) | 16, 352 |
| XceI | RCATGY | 2 cut(s) | 450, 842 |
| XhoI | CTCGAG | 2 cut(s) | 29, 472 |
| XspI | CTAG | 1 cut(s) | 63 |
| ZrmI | AGTACT | 1 cut(s) | 667 |
| Zsp2I | ATGCAT | 1 cut(s) | 79 |