Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_4 | PF12799 | 96 - 135 | 5e-06 | Leucine Rich repeats (2 copies) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 106 |
| AclWI | GGATC | 3 cut(s) | 325, 381, 699 |
| AcsI | RAATTY | 1 cut(s) | 402 |
| AfaI | GTAC | 3 cut(s) | 187, 474, 548 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 673 |
| AgsI | TTSAA | 3 cut(s) | 210, 225, 274 |
| AjnI | CCWGG | 1 cut(s) | 109 |
| AluBI | AGCT | 1 cut(s) | 420 |
| AluI | AGCT | 1 cut(s) | 420 |
| AlwI | GGATC | 3 cut(s) | 325, 381, 699 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 361 |
| AoxI | GGCC | 2 cut(s) | 286, 536 |
| ApeKI | GCWGC | 2 cut(s) | 658, 661 |
| ApoI | RAATTY | 1 cut(s) | 402 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 38, 70 |
| AspS9I | GGNCC | 1 cut(s) | 74 |
| AsuC2I | CCSGG | 1 cut(s) | 560 |
| AsuHPI | GGTGA | 2 cut(s) | 56, 145 |
| AvaII | GGWCC | 1 cut(s) | 74 |
| BbvI | GCAGC | 2 cut(s) | 670, 673 |
| BccI | CCATC | 1 cut(s) | 488 |
| BciT130I | CCWGG | 1 cut(s) | 111 |
| BcnI | CCSGG | 1 cut(s) | 560 |
| BfaI | CTAG | 3 cut(s) | 29, 290, 516 |
| BfmI | CTRYAG | 1 cut(s) | 353 |
| BisI | GCNGC | 2 cut(s) | 659, 662 |
| BlsI | GCNGC | 2 cut(s) | 660, 663 |
| Bme1390I | CCNGG | 2 cut(s) | 111, 560 |
| Bme18I | GGWCC | 1 cut(s) | 74 |
| BmgT120I | GGNCC | 1 cut(s) | 74 |
| BmiI | GGNNCC | 1 cut(s) | 75 |
| BmrFI | CCNGG | 2 cut(s) | 111, 560 |
| BmsI | GCATC | 1 cut(s) | 592 |
| BpmI | CTGGAG | 1 cut(s) | 345 |
| BpuEI | CTTGAG | 2 cut(s) | 63, 77 |
| BpuMI | CCSGG | 1 cut(s) | 560 |
| BsaJI | CCNNGG | 1 cut(s) | 597 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 673 |
| Bse1I | ACTGG | 4 cut(s) | 135, 289, 366, 454 |
| Bse3DI | GCAATG | 1 cut(s) | 508 |
| BseBI | CCWGG | 1 cut(s) | 111 |
| BseDI | CCNNGG | 1 cut(s) | 597 |
| BseGI | GGATG | 1 cut(s) | 607 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 673 |
| BseMI | GCAATG | 1 cut(s) | 508 |
| BseMII | CTCAG | 3 cut(s) | 296, 368, 452 |
| BseNI | ACTGG | 4 cut(s) | 135, 289, 366, 454 |
| BseXI | GCAGC | 2 cut(s) | 670, 673 |
| BshFI | GGCC | 2 cut(s) | 288, 538 |
| BsiSI | CCGG | 1 cut(s) | 559 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 673 |
| BsnI | GGCC | 2 cut(s) | 288, 538 |
| Bsp143I | GATC | 3 cut(s) | 330, 373, 691 |
| BspANI | GGCC | 2 cut(s) | 288, 538 |
| BspCNI | CTCAG | 3 cut(s) | 297, 369, 453 |
| BspHI | TCATGA | 1 cut(s) | 697 |
| BspLI | GGNNCC | 1 cut(s) | 75 |
| BspMAI | CTGCAG | 1 cut(s) | 357 |
| BspPI | GGATC | 3 cut(s) | 325, 381, 699 |
| BsrDI | GCAATG | 1 cut(s) | 508 |
| BsrI | ACTGG | 4 cut(s) | 135, 289, 366, 454 |
| BssECI | CCNNGG | 1 cut(s) | 597 |
| BssMI | GATC | 3 cut(s) | 330, 373, 691 |
| Bst2UI | CCWGG | 1 cut(s) | 111 |
| Bst4CI | ACNGT | 3 cut(s) | 7, 314, 598 |
| BstC8I | GCNNGC | 2 cut(s) | 39, 116 |
| BstDEI | CTNAG | 7 cut(s) | 60, 149, 179, 305, 377, 461, 574 |
| BstDSI | CCRYGG | 1 cut(s) | 597 |
| BstF5I | GGATG | 1 cut(s) | 607 |
| BstKTI | GATC | 3 cut(s) | 333, 376, 694 |
| BstMBI | GATC | 3 cut(s) | 330, 373, 691 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 34 |
| BstNI | CCWGG | 1 cut(s) | 111 |
| BstSCI | CCNGG | 2 cut(s) | 109, 558 |
| BstSFI | CTRYAG | 1 cut(s) | 353 |
| BstV1I | GCAGC | 2 cut(s) | 670, 673 |
| BstX2I | RGATCY | 3 cut(s) | 330, 373, 691 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 201 |
| BstYI | RGATCY | 3 cut(s) | 330, 373, 691 |
| BsuRI | GGCC | 2 cut(s) | 288, 538 |
| BtgI | CCRYGG | 1 cut(s) | 597 |
| BtsCI | GGATG | 1 cut(s) | 607 |
| BtsI | GCAGTG | 1 cut(s) | 350 |
| BtsIMutI | CAGTG | 1 cut(s) | 350 |
| Cac8I | GCNNGC | 2 cut(s) | 39, 116 |
| CaiI | CAGNNNCTG | 1 cut(s) | 361 |
| CciI | TCATGA | 1 cut(s) | 697 |
| Cfr13I | GGNCC | 1 cut(s) | 74 |
| Csp6I | GTAC | 3 cut(s) | 186, 473, 547 |
| CviAII | CATG | 2 cut(s) | 280, 698 |
| CviJI | RGCY | 5 cut(s) | 288, 420, 538, 626, 664 |
| CviKI_1 | RGCY | 5 cut(s) | 288, 420, 538, 626, 664 |
| CviQI | GTAC | 3 cut(s) | 186, 473, 547 |
| DdeI | CTNAG | 7 cut(s) | 60, 149, 179, 305, 377, 461, 574 |
| DpnI | GATC | 3 cut(s) | 332, 375, 693 |
| DpnII | GATC | 3 cut(s) | 330, 373, 691 |
| Eco32I | GATATC | 1 cut(s) | 642 |
| Eco47I | GGWCC | 1 cut(s) | 74 |
| EcoO109I | RGGNCCY | 1 cut(s) | 74 |
| EcoRII | CCWGG | 1 cut(s) | 109 |
| EcoRV | GATATC | 1 cut(s) | 642 |
| FaeI | CATG | 2 cut(s) | 283, 701 |
| FaiI | YATR | 9 cut(s) | 242, 269, 281, 346, 491, 567, 699, 704, 706 |
| FatI | CATG | 2 cut(s) | 279, 697 |
| FblI | GTMKAC | 1 cut(s) | 106 |
| Fnu4HI | GCNGC | 2 cut(s) | 659, 662 |
| FokI | GGATG | 1 cut(s) | 614 |
| Fsp4HI | GCNGC | 2 cut(s) | 659, 662 |
| FspBI | CTAG | 3 cut(s) | 29, 290, 516 |
| GluI | GCNGC | 2 cut(s) | 659, 662 |
| GsuI | CTGGAG | 1 cut(s) | 345 |
| HaeIII | GGCC | 2 cut(s) | 288, 538 |
| HapII | CCGG | 1 cut(s) | 559 |
| Hin1II | CATG | 2 cut(s) | 283, 701 |
| HincII | GTYRAC | 1 cut(s) | 219 |
| HindII | GTYRAC | 1 cut(s) | 219 |
| HinfI | GANTC | 5 cut(s) | 83, 90, 435, 479, 585 |
| HpaI | GTTAAC | 1 cut(s) | 219 |
| HpaII | CCGG | 1 cut(s) | 559 |
| HphI | GGTGA | 2 cut(s) | 56, 145 |
| Hpy166II | GTNNAC | 4 cut(s) | 107, 169, 219, 473 |
| Hpy188I | TCNGA | 2 cut(s) | 378, 462 |
| Hpy188III | TCNNGA | 6 cut(s) | 80, 87, 94, 324, 674, 698 |
| Hpy8I | GTNNAC | 4 cut(s) | 107, 169, 219, 473 |
| HpyAV | CCTTC | 1 cut(s) | 681 |
| HpyCH4III | ACNGT | 3 cut(s) | 7, 314, 598 |
| HpyCH4V | TGCA | 3 cut(s) | 214, 355, 658 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 34 |
| HpyF3I | CTNAG | 7 cut(s) | 60, 149, 179, 305, 377, 461, 574 |
| Hsp92II | CATG | 2 cut(s) | 283, 701 |
| KspAI | GTTAAC | 1 cut(s) | 219 |
| Kzo9I | GATC | 3 cut(s) | 330, 373, 691 |
| Lsp1109I | GCAGC | 2 cut(s) | 670, 673 |
| LweI | GCATC | 1 cut(s) | 592 |
| MaeI | CTAG | 3 cut(s) | 29, 290, 516 |
| MaeIII | GTNAC | 2 cut(s) | 44, 314 |
| MalI | GATC | 3 cut(s) | 332, 375, 693 |
| MboI | GATC | 3 cut(s) | 330, 373, 691 |
| MboII | GAAGA | 2 cut(s) | 478, 686 |
| MflI | RGATCY | 3 cut(s) | 330, 373, 691 |
| MluCI | AATT | 5 cut(s) | 156, 172, 296, 402, 681 |
| MlyI | GAGTC | 3 cut(s) | 84, 92, 473 |
| MmeI | TCCRAC | 1 cut(s) | 431 |
| MnlI | CCTC | 7 cut(s) | 87, 90, 135, 222, 345, 458, 504 |
| MseI | TTAA | 5 cut(s) | 218, 384, 422, 446, 552 |
| MspI | CCGG | 1 cut(s) | 559 |
| MspR9I | CCNGG | 2 cut(s) | 111, 560 |
| MvaI | CCWGG | 1 cut(s) | 111 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 34 |
| NciI | CCSGG | 1 cut(s) | 560 |
| NdeII | GATC | 3 cut(s) | 330, 373, 691 |
| NlaIII | CATG | 2 cut(s) | 283, 701 |
| NlaIV | GGNNCC | 1 cut(s) | 75 |
| NmuCI | GTSAC | 1 cut(s) | 44 |
| PagI | TCATGA | 1 cut(s) | 697 |
| PfeI | GAWTC | 2 cut(s) | 435, 585 |
| PkrI | GCNGC | 2 cut(s) | 660, 663 |
| PleI | GAGTC | 3 cut(s) | 84, 91, 473 |
| PpsI | GAGTC | 3 cut(s) | 84, 91, 473 |
| PpuMI | RGGWCCY | 1 cut(s) | 74 |
| Psp5II | RGGWCCY | 1 cut(s) | 74 |
| Psp6I | CCWGG | 1 cut(s) | 109 |
| PspGI | CCWGG | 1 cut(s) | 109 |
| PspN4I | GGNNCC | 1 cut(s) | 75 |
| PspPI | GGNCC | 1 cut(s) | 74 |
| PspPPI | RGGWCCY | 1 cut(s) | 74 |
| PstI | CTGCAG | 1 cut(s) | 357 |
| PstNI | CAGNNNCTG | 1 cut(s) | 361 |
| PsuI | RGATCY | 3 cut(s) | 330, 373, 691 |
| RsaI | GTAC | 3 cut(s) | 187, 474, 548 |
| RsaNI | GTAC | 3 cut(s) | 186, 473, 547 |
| SaqAI | TTAA | 5 cut(s) | 218, 384, 422, 446, 552 |
| SatI | GCNGC | 2 cut(s) | 659, 662 |
| Sau3AI | GATC | 3 cut(s) | 330, 373, 691 |
| Sau96I | GGNCC | 1 cut(s) | 74 |
| SchI | GAGTC | 3 cut(s) | 84, 92, 473 |
| ScrFI | CCNGG | 2 cut(s) | 111, 560 |
| SetI | ASST | 6 cut(s) | 101, 112, 127, 150, 345, 422 |
| SfaNI | GCATC | 1 cut(s) | 592 |
| SfcI | CTRYAG | 1 cut(s) | 353 |
| SinI | GGWCC | 1 cut(s) | 74 |
| SmlI | CTYRAG | 2 cut(s) | 78, 92 |
| SmoI | CTYRAG | 2 cut(s) | 78, 92 |
| Sse9I | AATT | 5 cut(s) | 156, 172, 296, 402, 681 |
| SspMI | CTAG | 3 cut(s) | 29, 290, 516 |
| StyD4I | CCNGG | 2 cut(s) | 109, 558 |
| TaaI | ACNGT | 3 cut(s) | 7, 314, 598 |
| TasI | AATT | 5 cut(s) | 156, 172, 296, 402, 681 |
| TatI | WGTACW | 1 cut(s) | 546 |
| TfiI | GAWTC | 2 cut(s) | 435, 585 |
| Tru1I | TTAA | 5 cut(s) | 218, 384, 422, 446, 552 |
| Tru9I | TTAA | 5 cut(s) | 218, 384, 422, 446, 552 |
| TscAI | CASTG | 1 cut(s) | 357 |
| TseFI | GTSAC | 1 cut(s) | 44 |
| TseI | GCWGC | 2 cut(s) | 658, 661 |
| Tsp45I | GTSAC | 1 cut(s) | 44 |
| TspDTI | ATGAA | 2 cut(s) | 478, 686 |
| TspRI | CASTG | 1 cut(s) | 357 |
| VpaK11BI | GGWCC | 1 cut(s) | 74 |
| XapI | RAATTY | 1 cut(s) | 402 |
| XmiI | GTMKAC | 1 cut(s) | 106 |
| XspI | CTAG | 3 cut(s) | 29, 290, 516 |