Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 306 |
| Acc36I | ACCTGC | 2 cut(s) | 108, 827 |
| Acc65I | GGTACC | 1 cut(s) | 208 |
| AccB1I | GGYRCC | 1 cut(s) | 208 |
| AccI | GTMKAC | 1 cut(s) | 676 |
| AciI | CCGC | 4 cut(s) | 624, 804, 821, 1048 |
| AcsI | RAATTY | 2 cut(s) | 24, 898 |
| AcvI | CACGTG | 1 cut(s) | 671 |
| AcyI | GRCGYC | 1 cut(s) | 303 |
| AdeI | CACNNNGTG | 1 cut(s) | 374 |
| AfaI | GTAC | 6 cut(s) | 107, 210, 222, 551, 602, 906 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 671 |
| AgsI | TTSAA | 4 cut(s) | 325, 437, 575, 878 |
| AluBI | AGCT | 7 cut(s) | 146, 269, 295, 342, 644, 702, 827 |
| AluI | AGCT | 7 cut(s) | 146, 269, 295, 342, 644, 702, 827 |
| Alw21I | GWGCWC | 1 cut(s) | 205 |
| Alw26I | GTCTC | 2 cut(s) | 470, 1085 |
| Ama87I | CYCGRG | 1 cut(s) | 160 |
| AoxI | GGCC | 2 cut(s) | 782, 1044 |
| ApeKI | GCWGC | 3 cut(s) | 84, 269, 560 |
| ApoI | RAATTY | 2 cut(s) | 24, 898 |
| Asp718I | GGTACC | 1 cut(s) | 208 |
| AspS9I | GGNCC | 3 cut(s) | 52, 579, 1045 |
| AsuHPI | GGTGA | 5 cut(s) | 106, 178, 485, 520, 605 |
| AvaI | CYCGRG | 1 cut(s) | 160 |
| AvaII | GGWCC | 2 cut(s) | 52, 579 |
| AxyI | CCTNAGG | 1 cut(s) | 216 |
| BanI | GGYRCC | 1 cut(s) | 208 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 89, 121 |
| BbrPI | CACGTG | 1 cut(s) | 671 |
| Bbv12I | GWGCWC | 1 cut(s) | 205 |
| BbvI | GCAGC | 3 cut(s) | 71, 256, 547 |
| BccI | CCATC | 3 cut(s) | 430, 590, 689 |
| BcoDI | GTCTC | 2 cut(s) | 470, 1085 |
| BfaI | CTAG | 4 cut(s) | 264, 482, 780, 1056 |
| BfuAI | ACCTGC | 2 cut(s) | 108, 827 |
| BisI | GCNGC | 3 cut(s) | 85, 270, 561 |
| BlpI | GCTNAGC | 1 cut(s) | 291 |
| BlsI | GCNGC | 3 cut(s) | 86, 271, 562 |
| BmcAI | AGTACT | 1 cut(s) | 551 |
| Bme18I | GGWCC | 2 cut(s) | 52, 579 |
| BmeT110I | CYCGRG | 1 cut(s) | 160 |
| BmgT120I | GGNCC | 3 cut(s) | 52, 579, 1045 |
| BmiI | GGNNCC | 1 cut(s) | 210 |
| Bpu10I | CCTNAGC | 2 cut(s) | 204, 593 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 291 |
| BpuEI | CTTGAG | 1 cut(s) | 665 |
| BsaAI | YACGTR | 2 cut(s) | 224, 671 |
| BsaBI | GATNNNNATC | 1 cut(s) | 930 |
| BsaHI | GRCGYC | 1 cut(s) | 303 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 750, 780, 897, 927 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 671 |
| Bse118I | RCCGGY | 1 cut(s) | 54 |
| Bse21I | CCTNAGG | 1 cut(s) | 216 |
| Bse3DI | GCAATG | 1 cut(s) | 370 |
| Bse8I | GATNNNNATC | 1 cut(s) | 930 |
| BseGI | GGATG | 1 cut(s) | 1078 |
| BseJI | GATNNNNATC | 1 cut(s) | 930 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 671 |
| BseMI | GCAATG | 1 cut(s) | 370 |
| BseMII | CTCAG | 3 cut(s) | 218, 305, 607 |
| BseXI | GCAGC | 3 cut(s) | 71, 256, 547 |
| BshFI | GGCC | 2 cut(s) | 784, 1046 |
| BshNI | GGYRCC | 1 cut(s) | 208 |
| BsiHKAI | GWGCWC | 1 cut(s) | 205 |
| BsiHKCI | CYCGRG | 1 cut(s) | 160 |
| BsiSI | CCGG | 1 cut(s) | 55 |
| BslFI | GGGAC | 1 cut(s) | 648 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 671 |
| BsmAI | GTCTC | 2 cut(s) | 470, 1085 |
| BsmFI | GGGAC | 1 cut(s) | 648 |
| BsnI | GGCC | 2 cut(s) | 784, 1046 |
| BsoBI | CYCGRG | 1 cut(s) | 160 |
| Bsp1286I | GDGCHC | 1 cut(s) | 205 |
| Bsp143I | GATC | 2 cut(s) | 10, 931 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 291 |
| BspACI | CCGC | 4 cut(s) | 624, 804, 821, 1048 |
| BspANI | GGCC | 2 cut(s) | 784, 1046 |
| BspCNI | CTCAG | 3 cut(s) | 217, 304, 606 |
| BspLI | GGNNCC | 1 cut(s) | 210 |
| BspMI | ACCTGC | 2 cut(s) | 108, 827 |
| BspT107I | GGYRCC | 1 cut(s) | 208 |
| BsrDI | GCAATG | 1 cut(s) | 370 |
| BsrFI | RCCGGY | 1 cut(s) | 54 |
| BssAI | RCCGGY | 1 cut(s) | 54 |
| BssMI | GATC | 2 cut(s) | 10, 931 |
| BssNI | GRCGYC | 1 cut(s) | 303 |
| Bst4CI | ACNGT | 1 cut(s) | 94 |
| Bst6I | CTCTTC | 3 cut(s) | 92, 632, 943 |
| BstACI | GRCGYC | 1 cut(s) | 303 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 374, 394 |
| BstBAI | YACGTR | 2 cut(s) | 224, 671 |
| BstC8I | GCNNGC | 2 cut(s) | 144, 1048 |
| BstDEI | CTNAG | 6 cut(s) | 32, 204, 216, 291, 593, 830 |
| BstF5I | GGATG | 1 cut(s) | 1078 |
| BstKTI | GATC | 2 cut(s) | 13, 934 |
| BstMAI | GTCTC | 2 cut(s) | 470, 1085 |
| BstMBI | GATC | 2 cut(s) | 10, 931 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 64, 235, 374, 394, 776, 803, 833, 1052 |
| BstNSI | RCATGY | 2 cut(s) | 397, 911 |
| BstSNI | TACGTA | 1 cut(s) | 224 |
| BstV1I | GCAGC | 3 cut(s) | 71, 256, 547 |
| Bsu36I | CCTNAGG | 1 cut(s) | 216 |
| BsuRI | GGCC | 2 cut(s) | 784, 1046 |
| BtsCI | GGATG | 1 cut(s) | 1078 |
| BveI | ACCTGC | 2 cut(s) | 108, 827 |
| Cac8I | GCNNGC | 2 cut(s) | 144, 1048 |
| Cfr10I | RCCGGY | 1 cut(s) | 54 |
| Cfr13I | GGNCC | 3 cut(s) | 52, 579, 1045 |
| Csp6I | GTAC | 6 cut(s) | 106, 209, 221, 550, 601, 905 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1011, 1046 |
| CviAII | CATG | 4 cut(s) | 230, 394, 660, 908 |
| CviQI | GTAC | 6 cut(s) | 106, 209, 221, 550, 601, 905 |
| DdeI | CTNAG | 6 cut(s) | 32, 204, 216, 291, 593, 830 |
| DpnI | GATC | 2 cut(s) | 12, 933 |
| DpnII | GATC | 2 cut(s) | 10, 931 |
| DraI | TTTAAA | 1 cut(s) | 355 |
| DraIII | CACNNNGTG | 1 cut(s) | 374 |
| Eam1104I | CTCTTC | 3 cut(s) | 92, 632, 943 |
| EarI | CTCTTC | 3 cut(s) | 92, 632, 943 |
| Eco105I | TACGTA | 1 cut(s) | 224 |
| Eco147I | AGGCCT | 1 cut(s) | 784 |
| Eco47I | GGWCC | 2 cut(s) | 52, 579 |
| Eco72I | CACGTG | 1 cut(s) | 671 |
| Eco81I | CCTNAGG | 1 cut(s) | 216 |
| Eco88I | CYCGRG | 1 cut(s) | 160 |
| EcoT22I | ATGCAT | 1 cut(s) | 231 |
| FaeI | CATG | 4 cut(s) | 233, 397, 663, 911 |
| FaqI | GGGAC | 1 cut(s) | 648 |
| FatI | CATG | 4 cut(s) | 229, 393, 659, 907 |
| FauI | CCCGC | 1 cut(s) | 1055 |
| FauNDI | CATATG | 1 cut(s) | 813 |
| FblI | GTMKAC | 1 cut(s) | 676 |
| Fnu4HI | GCNGC | 3 cut(s) | 85, 270, 561 |
| FokI | GGATG | 1 cut(s) | 1085 |
| Fsp4HI | GCNGC | 3 cut(s) | 85, 270, 561 |
| FspBI | CTAG | 4 cut(s) | 264, 482, 780, 1056 |
| GluI | GCNGC | 3 cut(s) | 85, 270, 561 |
| HaeIII | GGCC | 2 cut(s) | 784, 1046 |
| HapII | CCGG | 1 cut(s) | 55 |
| Hin1I | GRCGYC | 1 cut(s) | 303 |
| Hin1II | CATG | 4 cut(s) | 233, 397, 663, 911 |
| HindIII | AAGCTT | 1 cut(s) | 144 |
| HinfI | GANTC | 2 cut(s) | 158, 678 |
| HpaII | CCGG | 1 cut(s) | 55 |
| HphI | GGTGA | 5 cut(s) | 106, 178, 485, 520, 605 |
| Hpy166II | GTNNAC | 2 cut(s) | 191, 677 |
| Hpy188I | TCNGA | 1 cut(s) | 157 |
| Hpy188III | TCNNGA | 1 cut(s) | 1016 |
| Hpy8I | GTNNAC | 2 cut(s) | 191, 677 |
| HpyAV | CCTTC | 1 cut(s) | 122 |
| HpyCH4III | ACNGT | 1 cut(s) | 94 |
| HpyCH4IV | ACGT | 3 cut(s) | 223, 303, 670 |
| HpyCH4V | TGCA | 6 cut(s) | 229, 363, 368, 911, 944, 1003 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 64, 235, 374, 394, 776, 803, 833, 1052 |
| HpyF3I | CTNAG | 6 cut(s) | 32, 204, 216, 291, 593, 830 |
| HpySE526I | ACGT | 3 cut(s) | 223, 303, 670 |
| Hsp92I | GRCGYC | 1 cut(s) | 303 |
| Hsp92II | CATG | 4 cut(s) | 233, 397, 663, 911 |
| KpnI | GGTACC | 1 cut(s) | 212 |
| Kzo9I | GATC | 2 cut(s) | 10, 931 |
| LmnI | GCTCC | 2 cut(s) | 300, 699 |
| Lsp1109I | GCAGC | 3 cut(s) | 71, 256, 547 |
| MaeI | CTAG | 4 cut(s) | 264, 482, 780, 1056 |
| MaeII | ACGT | 3 cut(s) | 223, 303, 670 |
| MaeIII | GTNAC | 1 cut(s) | 611 |
| MalI | GATC | 2 cut(s) | 12, 933 |
| MboI | GATC | 2 cut(s) | 10, 931 |
| MboII | GAAGA | 6 cut(s) | 109, 189, 646, 649, 881, 960 |
| MhlI | GDGCHC | 1 cut(s) | 205 |
| MluCI | AATT | 4 cut(s) | 6, 24, 898, 988 |
| MlyI | GAGTC | 2 cut(s) | 152, 672 |
| MmeI | TCCRAC | 2 cut(s) | 114, 1050 |
| MnlI | CCTC | 8 cut(s) | 38, 43, 222, 328, 536, 719, 748, 952 |
| Mph1103I | ATGCAT | 1 cut(s) | 231 |
| MseI | TTAA | 3 cut(s) | 354, 494, 987 |
| MspI | CCGG | 1 cut(s) | 55 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 64, 235, 374, 394, 776, 803, 833, 1052 |
| NdeI | CATATG | 1 cut(s) | 813 |
| NdeII | GATC | 2 cut(s) | 10, 931 |
| NlaIII | CATG | 4 cut(s) | 233, 397, 663, 911 |
| NlaIV | GGNNCC | 1 cut(s) | 210 |
| NmuCI | GTSAC | 1 cut(s) | 611 |
| NsiI | ATGCAT | 1 cut(s) | 231 |
| NspI | RCATGY | 2 cut(s) | 397, 911 |
| PceI | AGGCCT | 1 cut(s) | 784 |
| PkrI | GCNGC | 3 cut(s) | 86, 271, 562 |
| PleI | GAGTC | 2 cut(s) | 152, 672 |
| PmaCI | CACGTG | 1 cut(s) | 671 |
| PmlI | CACGTG | 1 cut(s) | 671 |
| PpsI | GAGTC | 2 cut(s) | 152, 672 |
| Ppu21I | YACGTR | 2 cut(s) | 224, 671 |
| PspCI | CACGTG | 1 cut(s) | 671 |
| PspN4I | GGNNCC | 1 cut(s) | 210 |
| PspPI | GGNCC | 3 cut(s) | 52, 579, 1045 |
| RsaI | GTAC | 6 cut(s) | 107, 210, 222, 551, 602, 906 |
| RsaNI | GTAC | 6 cut(s) | 106, 209, 221, 550, 601, 905 |
| SaqAI | TTAA | 3 cut(s) | 354, 494, 987 |
| SatI | GCNGC | 3 cut(s) | 85, 270, 561 |
| Sau3AI | GATC | 2 cut(s) | 10, 931 |
| Sau96I | GGNCC | 3 cut(s) | 52, 579, 1045 |
| ScaI | AGTACT | 1 cut(s) | 551 |
| SchI | GAGTC | 2 cut(s) | 152, 672 |
| SduI | GDGCHC | 1 cut(s) | 205 |
| SinI | GGWCC | 2 cut(s) | 52, 579 |
| SmlI | CTYRAG | 1 cut(s) | 680 |
| SmoI | CTYRAG | 1 cut(s) | 680 |
| SnaBI | TACGTA | 1 cut(s) | 224 |
| Sse9I | AATT | 4 cut(s) | 6, 24, 898, 988 |
| SseBI | AGGCCT | 1 cut(s) | 784 |
| SsiI | CCGC | 4 cut(s) | 624, 804, 821, 1048 |
| SspMI | CTAG | 4 cut(s) | 264, 482, 780, 1056 |
| StuI | AGGCCT | 1 cut(s) | 784 |
| TaaI | ACNGT | 1 cut(s) | 94 |
| TaiI | ACGT | 3 cut(s) | 226, 306, 673 |
| TaqI | TCGA | 1 cut(s) | 882 |
| TasI | AATT | 4 cut(s) | 6, 24, 898, 988 |
| TatI | WGTACW | 2 cut(s) | 549, 600 |
| Tru1I | TTAA | 3 cut(s) | 354, 494, 987 |
| Tru9I | TTAA | 3 cut(s) | 354, 494, 987 |
| TseFI | GTSAC | 1 cut(s) | 611 |
| TseI | GCWGC | 3 cut(s) | 84, 269, 560 |
| Tsp45I | GTSAC | 1 cut(s) | 611 |
| TspDTI | ATGAA | 1 cut(s) | 800 |
| TspGWI | ACGGA | 1 cut(s) | 538 |
| VpaK11BI | GGWCC | 2 cut(s) | 52, 579 |
| XapI | RAATTY | 2 cut(s) | 24, 898 |
| XceI | RCATGY | 2 cut(s) | 397, 911 |
| XmiI | GTMKAC | 1 cut(s) | 676 |
| XspI | CTAG | 4 cut(s) | 264, 482, 780, 1056 |
| ZraI | GACGTC | 1 cut(s) | 304 |
| ZrmI | AGTACT | 1 cut(s) | 551 |
| Zsp2I | ATGCAT | 1 cut(s) | 231 |