Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 245 |
| AciI | CCGC | 3 cut(s) | 197, 770, 843 |
| AclWI | GGATC | 1 cut(s) | 442 |
| AcoI | YGGCCR | 2 cut(s) | 42, 840 |
| AcsI | RAATTY | 3 cut(s) | 458, 671, 740 |
| AfaI | GTAC | 1 cut(s) | 868 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 22, 58, 660 |
| AflIII | ACRYGT | 1 cut(s) | 401 |
| AgeI | ACCGGT | 1 cut(s) | 97 |
| AgsI | TTSAA | 3 cut(s) | 292, 676, 695 |
| AhlI | ACTAGT | 1 cut(s) | 863 |
| AluBI | AGCT | 6 cut(s) | 9, 163, 227, 305, 473, 789 |
| AluI | AGCT | 6 cut(s) | 9, 163, 227, 305, 473, 789 |
| Alw26I | GTCTC | 4 cut(s) | 119, 446, 776, 854 |
| AlwI | GGATC | 1 cut(s) | 442 |
| AoxI | GGCC | 2 cut(s) | 42, 840 |
| ApoI | RAATTY | 3 cut(s) | 458, 671, 740 |
| AsiGI | ACCGGT | 1 cut(s) | 97 |
| AspA2I | CCTAGG | 1 cut(s) | 52 |
| AsuHPI | GGTGA | 2 cut(s) | 621, 696 |
| AsuII | TTCGAA | 1 cut(s) | 817 |
| AvrII | CCTAGG | 1 cut(s) | 52 |
| BanII | GRGCYC | 1 cut(s) | 182 |
| BccI | CCATC | 2 cut(s) | 156, 507 |
| BclI | TGATCA | 1 cut(s) | 519 |
| BcoDI | GTCTC | 4 cut(s) | 119, 446, 776, 854 |
| BcuI | ACTAGT | 1 cut(s) | 863 |
| BfaI | CTAG | 3 cut(s) | 53, 786, 864 |
| BisI | GCNGC | 2 cut(s) | 771, 843 |
| BlnI | CCTAGG | 1 cut(s) | 52 |
| BlsI | GCNGC | 2 cut(s) | 772, 844 |
| BmsI | GCATC | 3 cut(s) | 613, 635, 757 |
| BoxI | GACNNNNGTC | 1 cut(s) | 84 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 773, 805 |
| Bpu14I | TTCGAA | 1 cut(s) | 817 |
| BpuEI | CTTGAG | 1 cut(s) | 213 |
| BsaI | GGTCTC | 1 cut(s) | 119 |
| BsaJI | CCNNGG | 2 cut(s) | 52, 870 |
| BsaWI | WCCGGW | 1 cut(s) | 97 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 22, 58, 660 |
| Bse118I | RCCGGY | 1 cut(s) | 97 |
| Bse1I | ACTGG | 1 cut(s) | 45 |
| Bse3DI | GCAATG | 1 cut(s) | 852 |
| BseDI | CCNNGG | 2 cut(s) | 52, 870 |
| BseGI | GGATG | 6 cut(s) | 12, 427, 518, 628, 643, 784 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 22, 58, 660 |
| BseMI | GCAATG | 1 cut(s) | 852 |
| BseMII | CTCAG | 1 cut(s) | 320 |
| BseNI | ACTGG | 1 cut(s) | 45 |
| BseRI | GAGGAG | 1 cut(s) | 464 |
| Bsh1285I | CGRYCG | 1 cut(s) | 116 |
| BshFI | GGCC | 2 cut(s) | 44, 842 |
| BshTI | ACCGGT | 1 cut(s) | 97 |
| BsiEI | CGRYCG | 1 cut(s) | 116 |
| BsiSI | CCGG | 1 cut(s) | 98 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 22, 58, 660 |
| BsmAI | GTCTC | 4 cut(s) | 119, 446, 776, 854 |
| BsnI | GGCC | 2 cut(s) | 44, 842 |
| Bso31I | GGTCTC | 1 cut(s) | 119 |
| Bsp119I | TTCGAA | 1 cut(s) | 817 |
| Bsp1286I | GDGCHC | 1 cut(s) | 182 |
| Bsp143I | GATC | 2 cut(s) | 434, 519 |
| Bsp19I | CCATGG | 1 cut(s) | 870 |
| BspACI | CCGC | 3 cut(s) | 197, 770, 843 |
| BspANI | GGCC | 2 cut(s) | 44, 842 |
| BspCNI | CTCAG | 1 cut(s) | 319 |
| BspHI | TCATGA | 1 cut(s) | 76 |
| BspPI | GGATC | 1 cut(s) | 442 |
| BspT104I | TTCGAA | 1 cut(s) | 817 |
| BspTNI | GGTCTC | 1 cut(s) | 119 |
| BsrDI | GCAATG | 1 cut(s) | 852 |
| BsrFI | RCCGGY | 1 cut(s) | 97 |
| BsrI | ACTGG | 1 cut(s) | 45 |
| BssAI | RCCGGY | 1 cut(s) | 97 |
| BssECI | CCNNGG | 2 cut(s) | 52, 870 |
| BssMI | GATC | 2 cut(s) | 434, 519 |
| BssNAI | GTATAC | 1 cut(s) | 246 |
| BssT1I | CCWWGG | 2 cut(s) | 52, 870 |
| Bst1107I | GTATAC | 1 cut(s) | 246 |
| Bst4CI | ACNGT | 3 cut(s) | 83, 538, 712 |
| BstBI | TTCGAA | 1 cut(s) | 817 |
| BstDEI | CTNAG | 4 cut(s) | 306, 357, 375, 543 |
| BstDSI | CCRYGG | 1 cut(s) | 870 |
| BstF5I | GGATG | 6 cut(s) | 12, 427, 518, 628, 643, 784 |
| BstKTI | GATC | 2 cut(s) | 437, 522 |
| BstMAI | GTCTC | 4 cut(s) | 119, 446, 776, 854 |
| BstMBI | GATC | 2 cut(s) | 434, 519 |
| BstMCI | CGRYCG | 1 cut(s) | 116 |
| BstNSI | RCATGY | 1 cut(s) | 405 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 84 |
| BstX2I | RGATCY | 1 cut(s) | 434 |
| BstYI | RGATCY | 1 cut(s) | 434 |
| BstZ17I | GTATAC | 1 cut(s) | 246 |
| BsuRI | GGCC | 2 cut(s) | 44, 842 |
| BtgI | CCRYGG | 1 cut(s) | 870 |
| BtsCI | GGATG | 6 cut(s) | 12, 427, 518, 628, 643, 784 |
| CciI | TCATGA | 1 cut(s) | 76 |
| Cfr10I | RCCGGY | 1 cut(s) | 97 |
| Csp6I | GTAC | 1 cut(s) | 867 |
| CspAI | ACCGGT | 1 cut(s) | 97 |
| CviAII | CATG | 5 cut(s) | 77, 402, 407, 838, 871 |
| CviQI | GTAC | 1 cut(s) | 867 |
| DdeI | CTNAG | 4 cut(s) | 306, 357, 375, 543 |
| DpnI | GATC | 2 cut(s) | 436, 521 |
| DpnII | GATC | 2 cut(s) | 434, 519 |
| EaeI | YGGCCR | 2 cut(s) | 42, 840 |
| Eco130I | CCWWGG | 2 cut(s) | 52, 870 |
| Eco24I | GRGCYC | 1 cut(s) | 182 |
| Eco31I | GGTCTC | 1 cut(s) | 119 |
| EcoT14I | CCWWGG | 2 cut(s) | 52, 870 |
| EcoT22I | ATGCAT | 1 cut(s) | 628 |
| EcoT38I | GRGCYC | 1 cut(s) | 182 |
| ErhI | CCWWGG | 2 cut(s) | 52, 870 |
| FaeI | CATG | 5 cut(s) | 80, 405, 410, 841, 874 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 113, 145, 135, 167, 746, 778 |
| FatI | CATG | 5 cut(s) | 76, 401, 406, 837, 870 |
| FauI | CCCGC | 1 cut(s) | 190 |
| FauNDI | CATATG | 1 cut(s) | 793 |
| FbaI | TGATCA | 1 cut(s) | 519 |
| FblI | GTMKAC | 1 cut(s) | 245 |
| Fnu4HI | GCNGC | 2 cut(s) | 771, 843 |
| FokI | GGATG | 5 cut(s) | 434, 525, 635, 650, 791 |
| FriOI | GRGCYC | 1 cut(s) | 182 |
| Fsp4HI | GCNGC | 2 cut(s) | 771, 843 |
| FspBI | CTAG | 3 cut(s) | 53, 786, 864 |
| GluI | GCNGC | 2 cut(s) | 771, 843 |
| HaeIII | GGCC | 2 cut(s) | 44, 842 |
| HapII | CCGG | 1 cut(s) | 98 |
| Hin1II | CATG | 5 cut(s) | 80, 405, 410, 841, 874 |
| HinfI | GANTC | 2 cut(s) | 332, 353 |
| HpaII | CCGG | 1 cut(s) | 98 |
| HphI | GGTGA | 2 cut(s) | 621, 696 |
| Hpy166II | GTNNAC | 2 cut(s) | 95, 246 |
| Hpy188I | TCNGA | 2 cut(s) | 723, 739 |
| Hpy188III | TCNNGA | 2 cut(s) | 77, 676 |
| Hpy8I | GTNNAC | 2 cut(s) | 95, 246 |
| HpyAV | CCTTC | 2 cut(s) | 115, 583 |
| HpyCH4III | ACNGT | 3 cut(s) | 83, 538, 712 |
| HpyCH4IV | ACGT | 2 cut(s) | 257, 659 |
| HpyCH4V | TGCA | 6 cut(s) | 134, 253, 485, 626, 643, 856 |
| HpyF3I | CTNAG | 4 cut(s) | 306, 357, 375, 543 |
| HpySE526I | ACGT | 2 cut(s) | 257, 659 |
| Hsp92II | CATG | 5 cut(s) | 80, 405, 410, 841, 874 |
| Ksp22I | TGATCA | 1 cut(s) | 519 |
| Kzo9I | GATC | 2 cut(s) | 434, 519 |
| LmnI | GCTCC | 1 cut(s) | 579 |
| LpnPI | CCDG | 6 cut(s) | 7, 26, 111, 161, 307, 842 |
| LweI | GCATC | 3 cut(s) | 613, 635, 757 |
| MaeI | CTAG | 3 cut(s) | 53, 786, 864 |
| MaeII | ACGT | 2 cut(s) | 257, 659 |
| MaeIII | GTNAC | 5 cut(s) | 36, 538, 558, 596, 758 |
| MalI | GATC | 2 cut(s) | 436, 521 |
| MboI | GATC | 2 cut(s) | 434, 519 |
| MboII | GAAGA | 2 cut(s) | 130, 169 |
| MfeI | CAATTG | 1 cut(s) | 429 |
| MflI | RGATCY | 1 cut(s) | 434 |
| MhlI | GDGCHC | 1 cut(s) | 182 |
| MluCI | AATT | 4 cut(s) | 429, 458, 671, 740 |
| MlyI | GAGTC | 1 cut(s) | 362 |
| MmeI | TCCRAC | 1 cut(s) | 728 |
| MnlI | CCTC | 6 cut(s) | 277, 442, 483, 493, 682, 790 |
| Mph1103I | ATGCAT | 1 cut(s) | 628 |
| MseI | TTAA | 3 cut(s) | 141, 348, 648 |
| MslI | CAYNNNNRTG | 1 cut(s) | 400 |
| MspI | CCGG | 1 cut(s) | 98 |
| MunI | CAATTG | 1 cut(s) | 429 |
| NcoI | CCATGG | 1 cut(s) | 870 |
| NdeI | CATATG | 1 cut(s) | 793 |
| NdeII | GATC | 2 cut(s) | 434, 519 |
| NlaIII | CATG | 5 cut(s) | 80, 405, 410, 841, 874 |
| NmuCI | GTSAC | 1 cut(s) | 538 |
| NsiI | ATGCAT | 1 cut(s) | 628 |
| NspI | RCATGY | 1 cut(s) | 405 |
| NspV | TTCGAA | 1 cut(s) | 817 |
| PagI | TCATGA | 1 cut(s) | 76 |
| PciI | ACATGT | 1 cut(s) | 401 |
| PfeI | GAWTC | 1 cut(s) | 332 |
| PinAI | ACCGGT | 1 cut(s) | 97 |
| PkrI | GCNGC | 2 cut(s) | 772, 844 |
| PleI | GAGTC | 1 cut(s) | 361 |
| PpsI | GAGTC | 1 cut(s) | 361 |
| PscI | ACATGT | 1 cut(s) | 401 |
| PshAI | GACNNNNGTC | 1 cut(s) | 84 |
| PsuI | RGATCY | 1 cut(s) | 434 |
| RsaI | GTAC | 1 cut(s) | 868 |
| RsaNI | GTAC | 1 cut(s) | 867 |
| RseI | CAYNNNNRTG | 1 cut(s) | 400 |
| SaqAI | TTAA | 3 cut(s) | 141, 348, 648 |
| SatI | GCNGC | 2 cut(s) | 771, 843 |
| Sau3AI | GATC | 2 cut(s) | 434, 519 |
| SchI | GAGTC | 1 cut(s) | 362 |
| SduI | GDGCHC | 1 cut(s) | 182 |
| SfaNI | GCATC | 3 cut(s) | 613, 635, 757 |
| SfuI | TTCGAA | 1 cut(s) | 817 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 400 |
| SmlI | CTYRAG | 1 cut(s) | 228 |
| SmoI | CTYRAG | 1 cut(s) | 228 |
| SpeI | ACTAGT | 1 cut(s) | 863 |
| Sse9I | AATT | 4 cut(s) | 429, 458, 671, 740 |
| SsiI | CCGC | 3 cut(s) | 197, 770, 843 |
| SspMI | CTAG | 3 cut(s) | 53, 786, 864 |
| StyI | CCWWGG | 2 cut(s) | 52, 870 |
| TaaI | ACNGT | 3 cut(s) | 83, 538, 712 |
| TaiI | ACGT | 2 cut(s) | 260, 662 |
| TaqI | TCGA | 2 cut(s) | 116, 817 |
| TaqII | GACCGA | 1 cut(s) | 102 |
| TasI | AATT | 4 cut(s) | 429, 458, 671, 740 |
| TauI | GCSGC | 2 cut(s) | 773, 845 |
| TfiI | GAWTC | 1 cut(s) | 332 |
| Tru1I | TTAA | 3 cut(s) | 141, 348, 648 |
| Tru9I | TTAA | 3 cut(s) | 141, 348, 648 |
| TseFI | GTSAC | 1 cut(s) | 538 |
| Tsp45I | GTSAC | 1 cut(s) | 538 |
| TspDTI | ATGAA | 2 cut(s) | 438, 826 |
| XapI | RAATTY | 3 cut(s) | 458, 671, 740 |
| XceI | RCATGY | 1 cut(s) | 405 |
| XmaJI | CCTAGG | 1 cut(s) | 52 |
| XmiI | GTMKAC | 1 cut(s) | 245 |
| XspI | CTAG | 3 cut(s) | 53, 786, 864 |
| Zsp2I | ATGCAT | 1 cut(s) | 628 |