Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 747 |
| AciI | CCGC | 3 cut(s) | 313, 431, 698 |
| AcsI | RAATTY | 1 cut(s) | 262 |
| AcuI | CTGAAG | 1 cut(s) | 263 |
| AfaI | GTAC | 2 cut(s) | 574, 811 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 446, 449 |
| AflIII | ACRYGT | 1 cut(s) | 806 |
| AgsI | TTSAA | 1 cut(s) | 427 |
| AluBI | AGCT | 3 cut(s) | 94, 784, 815 |
| AluI | AGCT | 3 cut(s) | 94, 784, 815 |
| Alw26I | GTCTC | 1 cut(s) | 649 |
| AoxI | GGCC | 2 cut(s) | 291, 669 |
| ApeKI | GCWGC | 2 cut(s) | 94, 238 |
| ApoI | RAATTY | 1 cut(s) | 262 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| AspLEI | GCGC | 1 cut(s) | 748 |
| AspS9I | GGNCC | 2 cut(s) | 670, 710 |
| AsuHPI | GGTGA | 2 cut(s) | 83, 117 |
| AsuII | TTCGAA | 1 cut(s) | 12 |
| AvaII | GGWCC | 1 cut(s) | 710 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 236, 268 |
| BbvI | GCAGC | 2 cut(s) | 81, 225 |
| BccI | CCATC | 1 cut(s) | 192 |
| BciVI | GTATCC | 1 cut(s) | 572 |
| BclI | TGATCA | 1 cut(s) | 484 |
| BcoDI | GTCTC | 1 cut(s) | 649 |
| BfaI | CTAG | 2 cut(s) | 234, 249 |
| BfuI | GTATCC | 1 cut(s) | 572 |
| BisI | GCNGC | 3 cut(s) | 95, 239, 431 |
| BlsI | GCNGC | 3 cut(s) | 96, 240, 432 |
| BmcAI | AGTACT | 1 cut(s) | 574 |
| Bme18I | GGWCC | 1 cut(s) | 710 |
| BmgT120I | GGNCC | 2 cut(s) | 670, 710 |
| BmsI | GCATC | 4 cut(s) | 30, 692, 842, 859 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 281, 313 |
| Bpu14I | TTCGAA | 1 cut(s) | 12 |
| BpuEI | CTTGAG | 1 cut(s) | 519 |
| BsaAI | YACGTR | 1 cut(s) | 809 |
| BsaBI | GATNNNNATC | 2 cut(s) | 171, 767 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 269, 299, 485, 515, 578, 608 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 446, 449 |
| Bse1I | ACTGG | 3 cut(s) | 104, 410, 731 |
| Bse3DI | GCAATG | 1 cut(s) | 376 |
| Bse8I | GATNNNNATC | 2 cut(s) | 171, 767 |
| BseGI | GGATG | 2 cut(s) | 203, 400 |
| BseJI | GATNNNNATC | 2 cut(s) | 171, 767 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 446, 449 |
| BseMI | GCAATG | 1 cut(s) | 376 |
| BseMII | CTCAG | 1 cut(s) | 583 |
| BseNI | ACTGG | 3 cut(s) | 104, 410, 731 |
| BseRI | GAGGAG | 2 cut(s) | 506, 554 |
| BseXI | GCAGC | 2 cut(s) | 81, 225 |
| BsgI | GTGCAG | 1 cut(s) | 80 |
| BshFI | GGCC | 2 cut(s) | 293, 671 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 446, 449 |
| BsmAI | GTCTC | 1 cut(s) | 649 |
| BsmI | GAATGC | 1 cut(s) | 795 |
| BsnI | GGCC | 2 cut(s) | 293, 671 |
| Bsp119I | TTCGAA | 1 cut(s) | 12 |
| Bsp143I | GATC | 4 cut(s) | 475, 484, 511, 762 |
| BspACI | CCGC | 3 cut(s) | 313, 431, 698 |
| BspANI | GGCC | 2 cut(s) | 293, 671 |
| BspCNI | CTCAG | 1 cut(s) | 582 |
| BspT104I | TTCGAA | 1 cut(s) | 12 |
| BsrDI | GCAATG | 1 cut(s) | 376 |
| BsrI | ACTGG | 3 cut(s) | 104, 410, 731 |
| BssMI | GATC | 4 cut(s) | 475, 484, 511, 762 |
| Bst6I | CTCTTC | 1 cut(s) | 823 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 185 |
| BstBAI | YACGTR | 1 cut(s) | 809 |
| BstBI | TTCGAA | 1 cut(s) | 12 |
| BstC8I | GCNNGC | 1 cut(s) | 756 |
| BstDEI | CTNAG | 2 cut(s) | 282, 569 |
| BstEII | GGTNACC | 1 cut(s) | 405 |
| BstF5I | GGATG | 2 cut(s) | 203, 400 |
| BstHHI | GCGC | 1 cut(s) | 748 |
| BstKTI | GATC | 4 cut(s) | 478, 487, 514, 765 |
| BstMAI | GTCTC | 1 cut(s) | 649 |
| BstMBI | GATC | 4 cut(s) | 475, 484, 511, 762 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 185, 235, 436 |
| BstNSI | RCATGY | 2 cut(s) | 698, 752 |
| BstPI | GGTNACC | 1 cut(s) | 405 |
| BstV1I | GCAGC | 2 cut(s) | 81, 225 |
| BsuI | GTATCC | 1 cut(s) | 572 |
| BsuRI | GGCC | 2 cut(s) | 293, 671 |
| BtsCI | GGATG | 2 cut(s) | 203, 400 |
| BtsIMutI | CAGTG | 1 cut(s) | 97 |
| Cac8I | GCNNGC | 1 cut(s) | 756 |
| CfoI | GCGC | 1 cut(s) | 748 |
| Cfr13I | GGNCC | 2 cut(s) | 670, 710 |
| Csp6I | GTAC | 2 cut(s) | 573, 810 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 47, 82 |
| CviAII | CATG | 4 cut(s) | 108, 309, 695, 749 |
| CviQI | GTAC | 2 cut(s) | 573, 810 |
| DdeI | CTNAG | 2 cut(s) | 282, 569 |
| DpnI | GATC | 4 cut(s) | 477, 486, 513, 764 |
| DpnII | GATC | 4 cut(s) | 475, 484, 511, 762 |
| Eam1104I | CTCTTC | 1 cut(s) | 823 |
| EarI | CTCTTC | 1 cut(s) | 823 |
| EciI | GGCGGA | 1 cut(s) | 328 |
| Eco47I | GGWCC | 1 cut(s) | 710 |
| Eco57I | CTGAAG | 1 cut(s) | 263 |
| Eco91I | GGTNACC | 1 cut(s) | 405 |
| EcoO65I | GGTNACC | 1 cut(s) | 405 |
| EcoT22I | ATGCAT | 1 cut(s) | 45 |
| FaeI | CATG | 4 cut(s) | 111, 312, 698, 752 |
| FatI | CATG | 4 cut(s) | 107, 308, 694, 748 |
| FauNDI | CATATG | 1 cut(s) | 220 |
| FbaI | TGATCA | 1 cut(s) | 484 |
| Fnu4HI | GCNGC | 3 cut(s) | 95, 239, 431 |
| FokI | GGATG | 2 cut(s) | 210, 407 |
| Fsp4HI | GCNGC | 3 cut(s) | 95, 239, 431 |
| FspAI | RTGCGCAY | 1 cut(s) | 747 |
| FspBI | CTAG | 2 cut(s) | 234, 249 |
| FspI | TGCGCA | 1 cut(s) | 747 |
| GlaI | GCGC | 1 cut(s) | 747 |
| GluI | GCNGC | 3 cut(s) | 95, 239, 431 |
| HaeIII | GGCC | 2 cut(s) | 293, 671 |
| HhaI | GCGC | 1 cut(s) | 748 |
| Hin1II | CATG | 4 cut(s) | 111, 312, 698, 752 |
| Hin6I | GCGC | 1 cut(s) | 746 |
| HinP1I | GCGC | 1 cut(s) | 746 |
| HinfI | GANTC | 3 cut(s) | 278, 296, 357 |
| HphI | GGTGA | 2 cut(s) | 83, 117 |
| Hpy166II | GTNNAC | 2 cut(s) | 125, 710 |
| Hpy188I | TCNGA | 3 cut(s) | 268, 579, 868 |
| Hpy188III | TCNNGA | 4 cut(s) | 488, 536, 634, 842 |
| Hpy8I | GTNNAC | 2 cut(s) | 125, 710 |
| HpyAV | CCTTC | 3 cut(s) | 238, 610, 724 |
| HpyCH4IV | ACGT | 1 cut(s) | 808 |
| HpyCH4V | TGCA | 6 cut(s) | 43, 97, 163, 683, 821, 835 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 185, 235, 436 |
| HpyF3I | CTNAG | 2 cut(s) | 282, 569 |
| HpySE526I | ACGT | 1 cut(s) | 808 |
| Hsp92II | CATG | 4 cut(s) | 111, 312, 698, 752 |
| HspAI | GCGC | 1 cut(s) | 746 |
| Ksp22I | TGATCA | 1 cut(s) | 484 |
| Kzo9I | GATC | 4 cut(s) | 475, 484, 511, 762 |
| LmnI | GCTCC | 1 cut(s) | 213 |
| LpnPI | CCDG | 9 cut(s) | 85, 119, 312, 423, 473, 577, 712, 768, 855 |
| Lsp1109I | GCAGC | 2 cut(s) | 81, 225 |
| LweI | GCATC | 4 cut(s) | 30, 692, 842, 859 |
| MaeI | CTAG | 2 cut(s) | 234, 249 |
| MaeII | ACGT | 1 cut(s) | 808 |
| MaeIII | GTNAC | 1 cut(s) | 405 |
| MalI | GATC | 4 cut(s) | 477, 486, 513, 764 |
| MboI | GATC | 4 cut(s) | 475, 484, 511, 762 |
| MboII | GAAGA | 4 cut(s) | 100, 678, 681, 840 |
| MluCI | AATT | 5 cut(s) | 4, 59, 262, 480, 524 |
| MlyI | GAGTC | 2 cut(s) | 287, 290 |
| MmeI | TCCRAC | 4 cut(s) | 267, 321, 435, 687 |
| Mph1103I | ATGCAT | 1 cut(s) | 45 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MseI | TTAA | 3 cut(s) | 171, 788, 877 |
| Mva1269I | GAATGC | 1 cut(s) | 795 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 185, 235, 436 |
| NdeI | CATATG | 1 cut(s) | 220 |
| NdeII | GATC | 4 cut(s) | 475, 484, 511, 762 |
| NlaIII | CATG | 4 cut(s) | 111, 312, 698, 752 |
| NsbI | TGCGCA | 1 cut(s) | 747 |
| NsiI | ATGCAT | 1 cut(s) | 45 |
| NspI | RCATGY | 2 cut(s) | 698, 752 |
| NspV | TTCGAA | 1 cut(s) | 12 |
| PctI | GAATGC | 1 cut(s) | 795 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PfeI | GAWTC | 1 cut(s) | 357 |
| PkrI | GCNGC | 3 cut(s) | 96, 240, 432 |
| PleI | GAGTC | 2 cut(s) | 286, 290 |
| PpsI | GAGTC | 2 cut(s) | 286, 290 |
| Ppu21I | YACGTR | 1 cut(s) | 809 |
| PspEI | GGTNACC | 1 cut(s) | 405 |
| PspPI | GGNCC | 2 cut(s) | 670, 710 |
| RsaI | GTAC | 2 cut(s) | 574, 811 |
| RsaNI | GTAC | 2 cut(s) | 573, 810 |
| SaqAI | TTAA | 3 cut(s) | 171, 788, 877 |
| SatI | GCNGC | 3 cut(s) | 95, 239, 431 |
| Sau3AI | GATC | 4 cut(s) | 475, 484, 511, 762 |
| Sau96I | GGNCC | 2 cut(s) | 670, 710 |
| ScaI | AGTACT | 1 cut(s) | 574 |
| SchI | GAGTC | 2 cut(s) | 287, 290 |
| SfaNI | GCATC | 4 cut(s) | 30, 692, 842, 859 |
| SfuI | TTCGAA | 1 cut(s) | 12 |
| SinI | GGWCC | 1 cut(s) | 710 |
| SmlI | CTYRAG | 1 cut(s) | 534 |
| SmoI | CTYRAG | 1 cut(s) | 534 |
| Sse9I | AATT | 5 cut(s) | 4, 59, 262, 480, 524 |
| SsiI | CCGC | 3 cut(s) | 313, 431, 698 |
| SspMI | CTAG | 2 cut(s) | 234, 249 |
| TaiI | ACGT | 1 cut(s) | 811 |
| TaqI | TCGA | 1 cut(s) | 12 |
| TasI | AATT | 5 cut(s) | 4, 59, 262, 480, 524 |
| TatI | WGTACW | 1 cut(s) | 572 |
| TauI | GCSGC | 1 cut(s) | 433 |
| TfiI | GAWTC | 1 cut(s) | 357 |
| Tru1I | TTAA | 3 cut(s) | 171, 788, 877 |
| Tru9I | TTAA | 3 cut(s) | 171, 788, 877 |
| TscAI | CASTG | 1 cut(s) | 104 |
| TseI | GCWGC | 2 cut(s) | 94, 238 |
| TspDTI | ATGAA | 2 cut(s) | 17, 96 |
| TspGWI | ACGGA | 1 cut(s) | 376 |
| TspRI | CASTG | 1 cut(s) | 104 |
| VpaK11BI | GGWCC | 1 cut(s) | 710 |
| XapI | RAATTY | 1 cut(s) | 262 |
| XceI | RCATGY | 2 cut(s) | 698, 752 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 368 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |
| XspI | CTAG | 2 cut(s) | 234, 249 |
| ZrmI | AGTACT | 1 cut(s) | 574 |
| Zsp2I | ATGCAT | 1 cut(s) | 45 |