ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 446 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 810 |
| AccI | GTMKAC | 1 cut(s) | 595 |
| AccII | CGCG | 2 cut(s) | 195, 501 |
| AciI | CCGC | 3 cut(s) | 17, 193, 557 |
| AclWI | GGATC | 3 cut(s) | 28, 638, 694 |
| AcsI | RAATTY | 1 cut(s) | 356 |
| AfaI | GTAC | 1 cut(s) | 789 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 256, 399, 434, 685, 810 |
| AgsI | TTSAA | 3 cut(s) | 521, 817, 854 |
| AjnI | CCWGG | 2 cut(s) | 142, 705 |
| AleI | CACNNNNGTG | 1 cut(s) | 292 |
| AluBI | AGCT | 4 cut(s) | 42, 171, 320, 509 |
| AluI | AGCT | 4 cut(s) | 42, 171, 320, 509 |
| Alw26I | GTCTC | 2 cut(s) | 59, 640 |
| AlwI | GGATC | 3 cut(s) | 28, 638, 694 |
| Ama87I | CYCGRG | 1 cut(s) | 66 |
| AoxI | GGCC | 2 cut(s) | 390, 676 |
| ApeKI | GCWGC | 1 cut(s) | 227 |
| ApoI | RAATTY | 1 cut(s) | 356 |
| AseI | ATTAAT | 1 cut(s) | 408 |
| AspLEI | GCGC | 2 cut(s) | 179, 501 |
| AspS9I | GGNCC | 4 cut(s) | 264, 330, 383, 390 |
| AsuHPI | GGTGA | 3 cut(s) | 123, 449, 758 |
| AvaI | CYCGRG | 1 cut(s) | 66 |
| AvaII | GGWCC | 3 cut(s) | 264, 330, 383 |
| BanII | GRGCYC | 1 cut(s) | 105 |
| BbsI | GAAGAC | 1 cut(s) | 520 |
| BbvI | GCAGC | 1 cut(s) | 214 |
| BccI | CCATC | 5 cut(s) | 250, 367, 452, 577, 812 |
| BciT130I | CCWGG | 2 cut(s) | 144, 707 |
| BcoDI | GTCTC | 2 cut(s) | 59, 640 |
| BfoI | RGCGCY | 1 cut(s) | 180 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 557 |
| BisI | GCNGC | 2 cut(s) | 228, 558 |
| BlpI | GCTNAGC | 1 cut(s) | 495 |
| BlsI | GCNGC | 2 cut(s) | 229, 559 |
| Bme1390I | CCNGG | 2 cut(s) | 144, 707 |
| Bme18I | GGWCC | 3 cut(s) | 264, 330, 383 |
| BmeT110I | CYCGRG | 1 cut(s) | 66 |
| BmgT120I | GGNCC | 4 cut(s) | 264, 330, 383, 390 |
| BmiI | GGNNCC | 2 cut(s) | 762, 822 |
| BmrFI | CCNGG | 2 cut(s) | 144, 707 |
| BpiI | GAAGAC | 1 cut(s) | 520 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 60, 92 |
| BpmI | CTGGAG | 2 cut(s) | 741, 810 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 495 |
| BsaJI | CCNNGG | 4 cut(s) | 154, 386, 429, 809 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 256, 399, 434, 685, 810 |
| Bse1I | ACTGG | 2 cut(s) | 446, 724 |
| Bse3DI | GCAATG | 1 cut(s) | 289 |
| BseBI | CCWGG | 2 cut(s) | 144, 707 |
| BseDI | CCNNGG | 4 cut(s) | 154, 386, 429, 809 |
| BseGI | GGATG | 1 cut(s) | 804 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 256, 399, 434, 685, 810 |
| BseMI | GCAATG | 1 cut(s) | 289 |
| BseMII | CTCAG | 4 cut(s) | 201, 486, 651, 725 |
| BseNI | ACTGG | 2 cut(s) | 446, 724 |
| BseRI | GAGGAG | 1 cut(s) | 175 |
| BseXI | GCAGC | 1 cut(s) | 214 |
| BseYI | CCCAGC | 1 cut(s) | 316 |
| Bsh1236I | CGCG | 2 cut(s) | 195, 501 |
| BshFI | GGCC | 2 cut(s) | 392, 678 |
| BsiHKCI | CYCGRG | 1 cut(s) | 66 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 256, 399, 434, 685, 810 |
| BsmAI | GTCTC | 2 cut(s) | 59, 640 |
| BsmBI | CGTCTC | 1 cut(s) | 640 |
| BsnI | GGCC | 2 cut(s) | 392, 678 |
| BsoBI | CYCGRG | 1 cut(s) | 66 |
| Bsp1286I | GDGCHC | 1 cut(s) | 105 |
| Bsp1407I | TGTACA | 1 cut(s) | 787 |
| Bsp143I | GATC | 5 cut(s) | 33, 70, 630, 699, 714 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 495 |
| Bsp19I | CCATGG | 1 cut(s) | 809 |
| BspACI | CCGC | 3 cut(s) | 17, 193, 557 |
| BspANI | GGCC | 2 cut(s) | 392, 678 |
| BspCNI | CTCAG | 4 cut(s) | 200, 487, 650, 724 |
| BspFNI | CGCG | 2 cut(s) | 195, 501 |
| BspLI | GGNNCC | 2 cut(s) | 762, 822 |
| BspPI | GGATC | 3 cut(s) | 28, 638, 694 |
| BsrDI | GCAATG | 1 cut(s) | 289 |
| BsrGI | TGTACA | 1 cut(s) | 787 |
| BsrI | ACTGG | 2 cut(s) | 446, 724 |
| BssECI | CCNNGG | 4 cut(s) | 154, 386, 429, 809 |
| BssMI | GATC | 5 cut(s) | 33, 70, 630, 699, 714 |
| BssT1I | CCWWGG | 4 cut(s) | 154, 386, 429, 809 |
| Bst2UI | CCWGG | 2 cut(s) | 144, 707 |
| Bst4CI | ACNGT | 3 cut(s) | 112, 402, 545 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 284 |
| BstAUI | TGTACA | 1 cut(s) | 787 |
| BstC8I | GCNNGC | 4 cut(s) | 44, 280, 503, 507 |
| BstDEI | CTNAG | 6 cut(s) | 187, 495, 637, 644, 696, 711 |
| BstDSI | CCRYGG | 1 cut(s) | 809 |
| BstF5I | GGATG | 1 cut(s) | 804 |
| BstFNI | CGCG | 2 cut(s) | 195, 501 |
| BstH2I | RGCGCY | 1 cut(s) | 180 |
| BstHHI | GCGC | 2 cut(s) | 179, 501 |
| BstKTI | GATC | 5 cut(s) | 36, 73, 633, 702, 717 |
| BstMAI | GTCTC | 2 cut(s) | 59, 640 |
| BstMBI | GATC | 5 cut(s) | 33, 70, 630, 699, 714 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 148, 284, 557, 782 |
| BstNI | CCWGG | 2 cut(s) | 144, 707 |
| BstSCI | CCNGG | 2 cut(s) | 142, 705 |
| BstUI | CGCG | 2 cut(s) | 195, 501 |
| BstV1I | GCAGC | 1 cut(s) | 214 |
| BstV2I | GAAGAC | 1 cut(s) | 520 |
| BstX2I | RGATCY | 1 cut(s) | 699 |
| BstYI | RGATCY | 1 cut(s) | 699 |
| BsuRI | GGCC | 2 cut(s) | 392, 678 |
| BtgI | CCRYGG | 1 cut(s) | 809 |
| BtgZI | GCGATG | 1 cut(s) | 596 |
| BtsCI | GGATG | 1 cut(s) | 804 |
| BtsIMutI | CAGTG | 2 cut(s) | 550, 717 |
| Cac8I | GCNNGC | 4 cut(s) | 44, 280, 503, 507 |
| CfoI | GCGC | 2 cut(s) | 179, 501 |
| Cfr13I | GGNCC | 4 cut(s) | 264, 330, 383, 390 |
| Csp6I | GTAC | 1 cut(s) | 788 |
| CviAII | CATG | 2 cut(s) | 394, 810 |
| CviQI | GTAC | 1 cut(s) | 788 |
| DdeI | CTNAG | 6 cut(s) | 187, 495, 637, 644, 696, 711 |
| DpnI | GATC | 5 cut(s) | 35, 72, 632, 701, 716 |
| DpnII | GATC | 5 cut(s) | 33, 70, 630, 699, 714 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 446 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 446 |
| Eco130I | CCWWGG | 4 cut(s) | 154, 386, 429, 809 |
| Eco24I | GRGCYC | 1 cut(s) | 105 |
| Eco47I | GGWCC | 3 cut(s) | 264, 330, 383 |
| Eco88I | CYCGRG | 1 cut(s) | 66 |
| EcoRII | CCWGG | 2 cut(s) | 142, 705 |
| EcoT14I | CCWWGG | 4 cut(s) | 154, 386, 429, 809 |
| EcoT38I | GRGCYC | 1 cut(s) | 105 |
| ErhI | CCWWGG | 4 cut(s) | 154, 386, 429, 809 |
| Esp3I | CGTCTC | 1 cut(s) | 640 |
| FaeI | CATG | 2 cut(s) | 397, 813 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 31, 63, 155, 187, 438, 470 |
| FatI | CATG | 2 cut(s) | 393, 809 |
| FblI | GTMKAC | 1 cut(s) | 595 |
| Fnu4HI | GCNGC | 2 cut(s) | 228, 558 |
| FokI | GGATG | 1 cut(s) | 791 |
| FriOI | GRGCYC | 1 cut(s) | 105 |
| Fsp4HI | GCNGC | 2 cut(s) | 228, 558 |
| GlaI | GCGC | 2 cut(s) | 178, 500 |
| GluI | GCNGC | 2 cut(s) | 228, 558 |
| GsaI | CCCAGC | 1 cut(s) | 320 |
| GsuI | CTGGAG | 2 cut(s) | 741, 810 |
| HaeII | RGCGCY | 1 cut(s) | 180 |
| HaeIII | GGCC | 2 cut(s) | 392, 678 |
| HhaI | GCGC | 2 cut(s) | 179, 501 |
| Hin1II | CATG | 2 cut(s) | 397, 813 |
| Hin6I | GCGC | 2 cut(s) | 177, 499 |
| HinP1I | GCGC | 2 cut(s) | 177, 499 |
| HincII | GTYRAC | 1 cut(s) | 451 |
| HindII | GTYRAC | 1 cut(s) | 451 |
| HindIII | AAGCTT | 2 cut(s) | 40, 169 |
| HinfI | GANTC | 2 cut(s) | 4, 692 |
| HphI | GGTGA | 3 cut(s) | 123, 449, 758 |
| Hpy166II | GTNNAC | 4 cut(s) | 330, 451, 596, 790 |
| Hpy188I | TCNGA | 4 cut(s) | 38, 372, 630, 714 |
| Hpy188III | TCNNGA | 2 cut(s) | 68, 827 |
| Hpy8I | GTNNAC | 4 cut(s) | 330, 451, 596, 790 |
| Hpy99I | CGWCG | 1 cut(s) | 63 |
| HpyAV | CCTTC | 5 cut(s) | 428, 560, 719, 752, 811 |
| HpyCH4III | ACNGT | 3 cut(s) | 112, 402, 545 |
| HpyCH4IV | ACGT | 1 cut(s) | 307 |
| HpyCH4V | TGCA | 3 cut(s) | 287, 297, 397 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 148, 284, 557, 782 |
| HpyF3I | CTNAG | 6 cut(s) | 187, 495, 637, 644, 696, 711 |
| HpySE526I | ACGT | 1 cut(s) | 307 |
| Hsp92II | CATG | 2 cut(s) | 397, 813 |
| HspAI | GCGC | 2 cut(s) | 177, 499 |
| Kzo9I | GATC | 5 cut(s) | 33, 70, 630, 699, 714 |
| LpnPI | CCDG | 9 cut(s) | 129, 156, 330, 427, 692, 692, 705, 719, 840 |
| Lsp1109I | GCAGC | 1 cut(s) | 214 |
| MaeII | ACGT | 1 cut(s) | 307 |
| MaeIII | GTNAC | 3 cut(s) | 311, 437, 860 |
| MalI | GATC | 5 cut(s) | 35, 72, 632, 701, 716 |
| MboI | GATC | 5 cut(s) | 33, 70, 630, 699, 714 |
| MboII | GAAGA | 4 cut(s) | 32, 520, 617, 866 |
| MflI | RGATCY | 1 cut(s) | 699 |
| MhlI | GDGCHC | 1 cut(s) | 105 |
| MluCI | AATT | 3 cut(s) | 220, 356, 409 |
| MmeI | TCCRAC | 1 cut(s) | 242 |
| MnlI | CCTC | 9 cut(s) | 75, 196, 253, 482, 682, 713, 751, 774, 834 |
| MseI | TTAA | 5 cut(s) | 114, 162, 350, 408, 573 |
| MslI | CAYNNNNRTG | 2 cut(s) | 222, 292 |
| MspR9I | CCNGG | 2 cut(s) | 144, 707 |
| MvaI | CCWGG | 2 cut(s) | 144, 707 |
| MvnI | CGCG | 2 cut(s) | 195, 501 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 148, 284, 557, 782 |
| NcoI | CCATGG | 1 cut(s) | 809 |
| NdeII | GATC | 5 cut(s) | 33, 70, 630, 699, 714 |
| NlaIII | CATG | 2 cut(s) | 397, 813 |
| NlaIV | GGNNCC | 2 cut(s) | 762, 822 |
| NmuCI | GTSAC | 2 cut(s) | 311, 437 |
| OliI | CACNNNNGTG | 1 cut(s) | 292 |
| PaeR7I | CTCGAG | 1 cut(s) | 66 |
| PfeI | GAWTC | 1 cut(s) | 692 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 810 |
| PkrI | GCNGC | 2 cut(s) | 229, 559 |
| PshBI | ATTAAT | 1 cut(s) | 408 |
| Psp6I | CCWGG | 2 cut(s) | 142, 705 |
| PspFI | CCCAGC | 1 cut(s) | 316 |
| PspGI | CCWGG | 2 cut(s) | 142, 705 |
| PspN4I | GGNNCC | 2 cut(s) | 762, 822 |
| PspPI | GGNCC | 4 cut(s) | 264, 330, 383, 390 |
| PsuI | RGATCY | 1 cut(s) | 699 |
| RsaI | GTAC | 1 cut(s) | 789 |
| RsaNI | GTAC | 1 cut(s) | 788 |
| RseI | CAYNNNNRTG | 2 cut(s) | 222, 292 |
| SaqAI | TTAA | 5 cut(s) | 114, 162, 350, 408, 573 |
| SatI | GCNGC | 2 cut(s) | 228, 558 |
| Sau3AI | GATC | 5 cut(s) | 33, 70, 630, 699, 714 |
| Sau96I | GGNCC | 4 cut(s) | 264, 330, 383, 390 |
| ScrFI | CCNGG | 2 cut(s) | 144, 707 |
| SduI | GDGCHC | 1 cut(s) | 105 |
| Sfr274I | CTCGAG | 1 cut(s) | 66 |
| SinI | GGWCC | 3 cut(s) | 264, 330, 383 |
| SlaI | CTCGAG | 1 cut(s) | 66 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 222, 292 |
| SmlI | CTYRAG | 1 cut(s) | 66 |
| SmoI | CTYRAG | 1 cut(s) | 66 |
| Sse9I | AATT | 3 cut(s) | 220, 356, 409 |
| SsiI | CCGC | 3 cut(s) | 17, 193, 557 |
| StyD4I | CCNGG | 2 cut(s) | 142, 705 |
| StyI | CCWWGG | 4 cut(s) | 154, 386, 429, 809 |
| TaaI | ACNGT | 3 cut(s) | 112, 402, 545 |
| TaiI | ACGT | 1 cut(s) | 310 |
| TaqI | TCGA | 1 cut(s) | 67 |
| TasI | AATT | 3 cut(s) | 220, 356, 409 |
| TatI | WGTACW | 1 cut(s) | 787 |
| TauI | GCSGC | 1 cut(s) | 560 |
| TfiI | GAWTC | 1 cut(s) | 692 |
| Tru1I | TTAA | 5 cut(s) | 114, 162, 350, 408, 573 |
| Tru9I | TTAA | 5 cut(s) | 114, 162, 350, 408, 573 |
| TscAI | CASTG | 2 cut(s) | 550, 724 |
| TseFI | GTSAC | 2 cut(s) | 311, 437 |
| TseI | GCWGC | 1 cut(s) | 227 |
| Tsp45I | GTSAC | 2 cut(s) | 311, 437 |
| TspDTI | ATGAA | 1 cut(s) | 369 |
| TspGWI | ACGGA | 1 cut(s) | 47 |
| TspRI | CASTG | 2 cut(s) | 550, 724 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 810 |
| VpaK11BI | GGWCC | 3 cut(s) | 264, 330, 383 |
| VspI | ATTAAT | 1 cut(s) | 408 |
| XapI | RAATTY | 1 cut(s) | 356 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 324 |
| XhoI | CTCGAG | 1 cut(s) | 66 |
| XmiI | GTMKAC | 1 cut(s) | 595 |