Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 36 |
| AclWI | GGATC | 1 cut(s) | 278 |
| AcvI | CACGTG | 1 cut(s) | 192 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 16, 43, 192 |
| AflIII | ACRYGT | 1 cut(s) | 189 |
| AgsI | TTSAA | 1 cut(s) | 127 |
| AjnI | CCWGG | 2 cut(s) | 174, 337 |
| AluBI | AGCT | 2 cut(s) | 49, 220 |
| AluI | AGCT | 2 cut(s) | 49, 220 |
| Alw21I | GWGCWC | 1 cut(s) | 222 |
| Alw26I | GTCTC | 2 cut(s) | 98, 174 |
| AlwI | GGATC | 1 cut(s) | 278 |
| Aor13HI | TCCGGA | 1 cut(s) | 36 |
| AoxI | GGCC | 2 cut(s) | 232, 335 |
| AspS9I | GGNCC | 1 cut(s) | 233 |
| AsuHPI | GGTGA | 1 cut(s) | 161 |
| BanII | GRGCYC | 1 cut(s) | 222 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 119, 151 |
| BbrPI | CACGTG | 1 cut(s) | 192 |
| Bbv12I | GWGCWC | 1 cut(s) | 222 |
| BciT130I | CCWGG | 2 cut(s) | 176, 339 |
| BciVI | GTATCC | 1 cut(s) | 285 |
| BcoDI | GTCTC | 2 cut(s) | 98, 174 |
| BfaI | CTAG | 3 cut(s) | 29, 165, 297 |
| BfuI | GTATCC | 1 cut(s) | 285 |
| Bme1390I | CCNGG | 2 cut(s) | 176, 339 |
| BmgT120I | GGNCC | 1 cut(s) | 233 |
| BmrFI | CCNGG | 2 cut(s) | 176, 339 |
| BmsI | GCATC | 1 cut(s) | 106 |
| BpmI | CTGGAG | 1 cut(s) | 103 |
| BsaAI | YACGTR | 1 cut(s) | 192 |
| BsaJI | CCNNGG | 2 cut(s) | 175, 287 |
| BsaWI | WCCGGW | 1 cut(s) | 36 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 16, 43, 192 |
| BseAI | TCCGGA | 1 cut(s) | 36 |
| BseBI | CCWGG | 2 cut(s) | 176, 339 |
| BseDI | CCNNGG | 2 cut(s) | 175, 287 |
| BseGI | GGATG | 1 cut(s) | 97 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 16, 43, 192 |
| BseMII | CTCAG | 1 cut(s) | 93 |
| BseRI | GAGGAG | 2 cut(s) | 32, 211 |
| BshFI | GGCC | 2 cut(s) | 234, 337 |
| BsiHKAI | GWGCWC | 1 cut(s) | 222 |
| BsiSI | CCGG | 1 cut(s) | 37 |
| BslFI | GGGAC | 1 cut(s) | 39 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 16, 43, 192 |
| BsmAI | GTCTC | 2 cut(s) | 98, 174 |
| BsmFI | GGGAC | 1 cut(s) | 39 |
| BsnI | GGCC | 2 cut(s) | 234, 337 |
| Bsp1286I | GDGCHC | 1 cut(s) | 222 |
| Bsp13I | TCCGGA | 1 cut(s) | 36 |
| Bsp143I | GATC | 1 cut(s) | 283 |
| BspANI | GGCC | 2 cut(s) | 234, 337 |
| BspCNI | CTCAG | 1 cut(s) | 94 |
| BspEI | TCCGGA | 1 cut(s) | 36 |
| BspPI | GGATC | 1 cut(s) | 278 |
| BssECI | CCNNGG | 2 cut(s) | 175, 287 |
| BssMI | GATC | 1 cut(s) | 283 |
| Bst2UI | CCWGG | 2 cut(s) | 176, 339 |
| Bst4CI | ACNGT | 1 cut(s) | 149 |
| BstBAI | YACGTR | 1 cut(s) | 192 |
| BstC8I | GCNNGC | 1 cut(s) | 162 |
| BstDEI | CTNAG | 2 cut(s) | 67, 102 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstF5I | GGATG | 1 cut(s) | 97 |
| BstKTI | GATC | 1 cut(s) | 286 |
| BstMAI | GTCTC | 2 cut(s) | 98, 174 |
| BstMBI | GATC | 1 cut(s) | 283 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 68, 94 |
| BstNI | CCWGG | 2 cut(s) | 176, 339 |
| BstNSI | RCATGY | 1 cut(s) | 164 |
| BstSCI | CCNGG | 2 cut(s) | 174, 337 |
| BsuI | GTATCC | 1 cut(s) | 285 |
| BsuRI | GGCC | 2 cut(s) | 234, 337 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtsCI | GGATG | 1 cut(s) | 97 |
| Cac8I | GCNNGC | 1 cut(s) | 162 |
| Cfr13I | GGNCC | 1 cut(s) | 233 |
| CviAII | CATG | 2 cut(s) | 77, 161 |
| CviJI | RGCY | 7 cut(s) | 49, 71, 81, 88, 220, 234, 337 |
| CviKI_1 | RGCY | 7 cut(s) | 49, 71, 81, 88, 220, 234, 337 |
| DdeI | CTNAG | 2 cut(s) | 67, 102 |
| DpnI | GATC | 1 cut(s) | 285 |
| DpnII | GATC | 1 cut(s) | 283 |
| DraI | TTTAAA | 1 cut(s) | 349 |
| Ecl136II | GAGCTC | 1 cut(s) | 220 |
| Eco147I | AGGCCT | 1 cut(s) | 337 |
| Eco24I | GRGCYC | 1 cut(s) | 222 |
| Eco53kI | GAGCTC | 1 cut(s) | 220 |
| Eco72I | CACGTG | 1 cut(s) | 192 |
| EcoICRI | GAGCTC | 1 cut(s) | 220 |
| EcoO109I | RGGNCCY | 1 cut(s) | 233 |
| EcoRII | CCWGG | 2 cut(s) | 174, 337 |
| EcoT22I | ATGCAT | 1 cut(s) | 162 |
| EcoT38I | GRGCYC | 1 cut(s) | 222 |
| FaeI | CATG | 2 cut(s) | 80, 164 |
| FaiI | YATR | 3 cut(s) | 44, 78, 162 |
| FaqI | GGGAC | 1 cut(s) | 39 |
| FatI | CATG | 2 cut(s) | 76, 160 |
| FokI | GGATG | 1 cut(s) | 84 |
| FriOI | GRGCYC | 1 cut(s) | 222 |
| FspBI | CTAG | 3 cut(s) | 29, 165, 297 |
| GsuI | CTGGAG | 1 cut(s) | 103 |
| HaeIII | GGCC | 2 cut(s) | 234, 337 |
| HapII | CCGG | 1 cut(s) | 37 |
| Hin1II | CATG | 2 cut(s) | 80, 164 |
| HinfI | GANTC | 2 cut(s) | 106, 182 |
| HpaII | CCGG | 1 cut(s) | 37 |
| HphI | GGTGA | 1 cut(s) | 161 |
| Hpy166II | GTNNAC | 1 cut(s) | 172 |
| Hpy188I | TCNGA | 1 cut(s) | 314 |
| Hpy188III | TCNNGA | 4 cut(s) | 10, 37, 101, 277 |
| Hpy8I | GTNNAC | 1 cut(s) | 172 |
| HpyAV | CCTTC | 3 cut(s) | 7, 121, 327 |
| HpyCH4III | ACNGT | 1 cut(s) | 149 |
| HpyCH4IV | ACGT | 1 cut(s) | 191 |
| HpyCH4V | TGCA | 1 cut(s) | 160 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 68, 94 |
| HpyF3I | CTNAG | 2 cut(s) | 67, 102 |
| HpySE526I | ACGT | 1 cut(s) | 191 |
| Hsp92II | CATG | 2 cut(s) | 80, 164 |
| Kpn2I | TCCGGA | 1 cut(s) | 36 |
| Kzo9I | GATC | 1 cut(s) | 283 |
| LmnI | GCTCC | 1 cut(s) | 46 |
| LpnPI | CCDG | 9 cut(s) | 50, 67, 114, 161, 188, 233, 262, 324, 351 |
| LweI | GCATC | 1 cut(s) | 106 |
| MaeI | CTAG | 3 cut(s) | 29, 165, 297 |
| MaeII | ACGT | 1 cut(s) | 191 |
| MalI | GATC | 1 cut(s) | 285 |
| MboI | GATC | 1 cut(s) | 283 |
| MboII | GAAGA | 1 cut(s) | 354 |
| MhlI | GDGCHC | 1 cut(s) | 222 |
| MlyI | GAGTC | 2 cut(s) | 100, 176 |
| MnlI | CCTC | 6 cut(s) | 10, 13, 78, 87, 189, 312 |
| Mph1103I | ATGCAT | 1 cut(s) | 162 |
| MroI | TCCGGA | 1 cut(s) | 36 |
| MseI | TTAA | 4 cut(s) | 54, 155, 203, 348 |
| MslI | CAYNNNNRTG | 1 cut(s) | 165 |
| MspI | CCGG | 1 cut(s) | 37 |
| MspR9I | CCNGG | 2 cut(s) | 176, 339 |
| MvaI | CCWGG | 2 cut(s) | 176, 339 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 68, 94 |
| NdeII | GATC | 1 cut(s) | 283 |
| NlaIII | CATG | 2 cut(s) | 80, 164 |
| NsiI | ATGCAT | 1 cut(s) | 162 |
| NspI | RCATGY | 1 cut(s) | 164 |
| PaeI | GCATGC | 1 cut(s) | 164 |
| PceI | AGGCCT | 1 cut(s) | 337 |
| PleI | GAGTC | 2 cut(s) | 100, 176 |
| PmaCI | CACGTG | 1 cut(s) | 192 |
| PmlI | CACGTG | 1 cut(s) | 192 |
| PpsI | GAGTC | 2 cut(s) | 100, 176 |
| Ppu21I | YACGTR | 1 cut(s) | 192 |
| Psp124BI | GAGCTC | 1 cut(s) | 222 |
| Psp6I | CCWGG | 2 cut(s) | 174, 337 |
| PspCI | CACGTG | 1 cut(s) | 192 |
| PspGI | CCWGG | 2 cut(s) | 174, 337 |
| PspPI | GGNCC | 1 cut(s) | 233 |
| RseI | CAYNNNNRTG | 1 cut(s) | 165 |
| SacI | GAGCTC | 1 cut(s) | 222 |
| SaqAI | TTAA | 4 cut(s) | 54, 155, 203, 348 |
| Sau3AI | GATC | 1 cut(s) | 283 |
| Sau96I | GGNCC | 1 cut(s) | 233 |
| SchI | GAGTC | 2 cut(s) | 100, 176 |
| ScrFI | CCNGG | 2 cut(s) | 176, 339 |
| SduI | GDGCHC | 1 cut(s) | 222 |
| SetI | ASST | 8 cut(s) | 34, 51, 177, 194, 222, 252, 298, 304 |
| SfaNI | GCATC | 1 cut(s) | 106 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 165 |
| SphI | GCATGC | 1 cut(s) | 164 |
| SseBI | AGGCCT | 1 cut(s) | 337 |
| SspMI | CTAG | 3 cut(s) | 29, 165, 297 |
| SstI | GAGCTC | 1 cut(s) | 222 |
| StuI | AGGCCT | 1 cut(s) | 337 |
| StyD4I | CCNGG | 2 cut(s) | 174, 337 |
| TaaI | ACNGT | 1 cut(s) | 149 |
| TaiI | ACGT | 1 cut(s) | 194 |
| Tru1I | TTAA | 4 cut(s) | 54, 155, 203, 348 |
| Tru9I | TTAA | 4 cut(s) | 54, 155, 203, 348 |
| TspDTI | ATGAA | 1 cut(s) | 221 |
| TspGWI | ACGGA | 1 cut(s) | 276 |
| XceI | RCATGY | 1 cut(s) | 164 |
| XspI | CTAG | 3 cut(s) | 29, 165, 297 |
| Zsp2I | ATGCAT | 1 cut(s) | 162 |