Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 271 |
| Acc36I | ACCTGC | 1 cut(s) | 271 |
| AciI | CCGC | 2 cut(s) | 5, 56 |
| AcsI | RAATTY | 1 cut(s) | 242 |
| AfaI | GTAC | 2 cut(s) | 42, 70 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 100, 153, 154 |
| AgsI | TTSAA | 1 cut(s) | 140 |
| AhlI | ACTAGT | 1 cut(s) | 221 |
| AoxI | GGCC | 1 cut(s) | 181 |
| ApoI | RAATTY | 1 cut(s) | 242 |
| AspLEI | GCGC | 1 cut(s) | 64 |
| AsuHPI | GGTGA | 1 cut(s) | 94 |
| BbsI | GAAGAC | 1 cut(s) | 263 |
| BcuI | ACTAGT | 1 cut(s) | 221 |
| BfaI | CTAG | 1 cut(s) | 222 |
| BfoI | RGCGCY | 1 cut(s) | 65 |
| BfuAI | ACCTGC | 1 cut(s) | 271 |
| BisI | GCNGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 7 |
| BpiI | GAAGAC | 1 cut(s) | 263 |
| BsaAI | YACGTR | 1 cut(s) | 299 |
| BsaJI | CCNNGG | 1 cut(s) | 94 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 100, 153, 154 |
| Bse1I | ACTGG | 1 cut(s) | 15 |
| BseDI | CCNNGG | 1 cut(s) | 94 |
| BseGI | GGATG | 3 cut(s) | 109, 163, 283 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 100, 153, 154 |
| BseMII | CTCAG | 1 cut(s) | 165 |
| BseNI | ACTGG | 1 cut(s) | 15 |
| BseRI | GAGGAG | 1 cut(s) | 176 |
| BseYI | CCCAGC | 1 cut(s) | 99 |
| BshFI | GGCC | 1 cut(s) | 183 |
| BsiSI | CCGG | 1 cut(s) | 184 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 100, 153, 154 |
| BsmI | GAATGC | 1 cut(s) | 235 |
| BsnI | GGCC | 1 cut(s) | 183 |
| BspACI | CCGC | 2 cut(s) | 5, 56 |
| BspANI | GGCC | 1 cut(s) | 183 |
| BspCNI | CTCAG | 1 cut(s) | 166 |
| BspMI | ACCTGC | 1 cut(s) | 271 |
| BsrI | ACTGG | 1 cut(s) | 15 |
| BssECI | CCNNGG | 1 cut(s) | 94 |
| BssT1I | CCWWGG | 1 cut(s) | 94 |
| Bst4CI | ACNGT | 1 cut(s) | 200 |
| BstBAI | YACGTR | 1 cut(s) | 299 |
| BstDEI | CTNAG | 1 cut(s) | 174 |
| BstF5I | GGATG | 3 cut(s) | 109, 163, 283 |
| BstH2I | RGCGCY | 1 cut(s) | 65 |
| BstHHI | GCGC | 1 cut(s) | 64 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstNSI | RCATGY | 1 cut(s) | 50 |
| BstSNI | TACGTA | 1 cut(s) | 299 |
| BstV2I | GAAGAC | 1 cut(s) | 263 |
| BsuRI | GGCC | 1 cut(s) | 183 |
| BtsCI | GGATG | 3 cut(s) | 109, 163, 283 |
| BtsIMutI | CAGTG | 1 cut(s) | 8 |
| BveI | ACCTGC | 1 cut(s) | 271 |
| CfoI | GCGC | 1 cut(s) | 64 |
| Csp6I | GTAC | 2 cut(s) | 41, 69 |
| CviAII | CATG | 1 cut(s) | 47 |
| CviJI | RGCY | 4 cut(s) | 14, 76, 99, 183 |
| CviKI_1 | RGCY | 4 cut(s) | 14, 76, 99, 183 |
| CviQI | GTAC | 2 cut(s) | 41, 69 |
| DdeI | CTNAG | 1 cut(s) | 174 |
| EciI | GGCGGA | 1 cut(s) | 71 |
| Eco105I | TACGTA | 1 cut(s) | 299 |
| Eco130I | CCWWGG | 1 cut(s) | 94 |
| EcoT14I | CCWWGG | 1 cut(s) | 94 |
| ErhI | CCWWGG | 1 cut(s) | 94 |
| FaeI | CATG | 1 cut(s) | 50 |
| FaiI | YATR | 8 cut(s) | 21, 23, 30, 48, 144, 153, 288, 296 |
| FatI | CATG | 1 cut(s) | 46 |
| FauNDI | CATATG | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 1 cut(s) | 6 |
| FokI | GGATG | 3 cut(s) | 116, 170, 290 |
| Fsp4HI | GCNGC | 1 cut(s) | 6 |
| FspBI | CTAG | 1 cut(s) | 222 |
| GlaI | GCGC | 1 cut(s) | 63 |
| GluI | GCNGC | 1 cut(s) | 6 |
| GsaI | CCCAGC | 1 cut(s) | 103 |
| HaeII | RGCGCY | 1 cut(s) | 65 |
| HaeIII | GGCC | 1 cut(s) | 183 |
| HapII | CCGG | 1 cut(s) | 184 |
| HhaI | GCGC | 1 cut(s) | 64 |
| Hin1II | CATG | 1 cut(s) | 50 |
| Hin6I | GCGC | 1 cut(s) | 62 |
| HinP1I | GCGC | 1 cut(s) | 62 |
| HinfI | GANTC | 1 cut(s) | 119 |
| HpaII | CCGG | 1 cut(s) | 184 |
| HphI | GGTGA | 1 cut(s) | 94 |
| Hpy188I | TCNGA | 2 cut(s) | 124, 175 |
| Hpy188III | TCNNGA | 2 cut(s) | 34, 275 |
| HpyCH4III | ACNGT | 1 cut(s) | 200 |
| HpyCH4IV | ACGT | 1 cut(s) | 298 |
| HpyCH4V | TGCA | 3 cut(s) | 46, 151, 233 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 1 cut(s) | 174 |
| HpySE526I | ACGT | 1 cut(s) | 298 |
| Hsp92II | CATG | 1 cut(s) | 50 |
| HspAI | GCGC | 1 cut(s) | 62 |
| LpnPI | CCDG | 6 cut(s) | 47, 57, 85, 161, 197, 276 |
| MaeI | CTAG | 1 cut(s) | 222 |
| MaeII | ACGT | 1 cut(s) | 298 |
| MaeIII | GTNAC | 1 cut(s) | 82 |
| MboII | GAAGA | 1 cut(s) | 268 |
| MluCI | AATT | 2 cut(s) | 87, 242 |
| MlyI | GAGTC | 1 cut(s) | 128 |
| MmeI | TCCRAC | 1 cut(s) | 206 |
| MnlI | CCTC | 7 cut(s) | 46, 52, 154, 157, 169, 187, 283 |
| MseI | TTAA | 1 cut(s) | 307 |
| MslI | CAYNNNNRTG | 1 cut(s) | 156 |
| MspI | CCGG | 1 cut(s) | 184 |
| Mva1269I | GAATGC | 1 cut(s) | 235 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NdeI | CATATG | 1 cut(s) | 21 |
| NlaIII | CATG | 1 cut(s) | 50 |
| NmuCI | GTSAC | 1 cut(s) | 82 |
| NspI | RCATGY | 1 cut(s) | 50 |
| PaqCI | CACCTGC | 1 cut(s) | 271 |
| PctI | GAATGC | 1 cut(s) | 235 |
| PkrI | GCNGC | 1 cut(s) | 7 |
| PleI | GAGTC | 1 cut(s) | 127 |
| PpsI | GAGTC | 1 cut(s) | 127 |
| Ppu21I | YACGTR | 1 cut(s) | 299 |
| PspFI | CCCAGC | 1 cut(s) | 99 |
| RsaI | GTAC | 2 cut(s) | 42, 70 |
| RsaNI | GTAC | 2 cut(s) | 41, 69 |
| RseI | CAYNNNNRTG | 1 cut(s) | 156 |
| SaqAI | TTAA | 1 cut(s) | 307 |
| SatI | GCNGC | 1 cut(s) | 6 |
| SchI | GAGTC | 1 cut(s) | 128 |
| SetI | ASST | 4 cut(s) | 180, 209, 265, 301 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 156 |
| SnaBI | TACGTA | 1 cut(s) | 299 |
| SpeI | ACTAGT | 1 cut(s) | 221 |
| Sse9I | AATT | 2 cut(s) | 87, 242 |
| SsiI | CCGC | 2 cut(s) | 5, 56 |
| SspMI | CTAG | 1 cut(s) | 222 |
| StyI | CCWWGG | 1 cut(s) | 94 |
| TaaI | ACNGT | 1 cut(s) | 200 |
| TaiI | ACGT | 1 cut(s) | 301 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 2 cut(s) | 87, 242 |
| TatI | WGTACW | 1 cut(s) | 40 |
| TauI | GCSGC | 1 cut(s) | 8 |
| Tru1I | TTAA | 1 cut(s) | 307 |
| Tru9I | TTAA | 1 cut(s) | 307 |
| TscAI | CASTG | 1 cut(s) | 15 |
| TseFI | GTSAC | 1 cut(s) | 82 |
| Tsp45I | GTSAC | 1 cut(s) | 82 |
| TspDTI | ATGAA | 2 cut(s) | 120, 255 |
| TspRI | CASTG | 1 cut(s) | 15 |
| XapI | RAATTY | 1 cut(s) | 242 |
| XceI | RCATGY | 1 cut(s) | 50 |
| XspI | CTAG | 1 cut(s) | 222 |