Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 87 - 207 | 1.4e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 269, 656 |
| AccII | CGCG | 1 cut(s) | 318 |
| AciI | CCGC | 2 cut(s) | 83, 239 |
| AcoI | YGGCCR | 1 cut(s) | 199 |
| AcsI | RAATTY | 1 cut(s) | 100 |
| AcuI | CTGAAG | 1 cut(s) | 272 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 242, 243, 666, 667 |
| AgeI | ACCGGT | 1 cut(s) | 130 |
| AgsI | TTSAA | 1 cut(s) | 220 |
| AjnI | CCWGG | 1 cut(s) | 664 |
| AluBI | AGCT | 3 cut(s) | 282, 610, 614 |
| AluI | AGCT | 3 cut(s) | 282, 610, 614 |
| Alw26I | GTCTC | 3 cut(s) | 205, 470, 555 |
| AoxI | GGCC | 2 cut(s) | 199, 255 |
| ApoI | RAATTY | 1 cut(s) | 100 |
| AsiGI | ACCGGT | 1 cut(s) | 130 |
| AspLEI | GCGC | 1 cut(s) | 604 |
| AsuNHI | GCTAGC | 1 cut(s) | 610 |
| BaeGI | GKGCMC | 1 cut(s) | 661 |
| BanI | GGYRCC | 2 cut(s) | 269, 656 |
| BccI | CCATC | 3 cut(s) | 4, 260, 412 |
| BceAI | ACGGC | 1 cut(s) | 186 |
| BciT130I | CCWGG | 1 cut(s) | 666 |
| BciVI | GTATCC | 1 cut(s) | 338 |
| BcoDI | GTCTC | 3 cut(s) | 205, 470, 555 |
| BfaI | CTAG | 2 cut(s) | 423, 611 |
| BfuI | GTATCC | 1 cut(s) | 338 |
| Bme1390I | CCNGG | 1 cut(s) | 666 |
| BmiI | GGNNCC | 3 cut(s) | 231, 271, 658 |
| BmrFI | CCNGG | 1 cut(s) | 666 |
| BmsI | GCATC | 1 cut(s) | 698 |
| BmtI | GCTAGC | 1 cut(s) | 614 |
| BsaJI | CCNNGG | 3 cut(s) | 202, 224, 665 |
| BsaWI | WCCGGW | 1 cut(s) | 130 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 26, 56 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 242, 243, 666, 667 |
| Bse118I | RCCGGY | 1 cut(s) | 130 |
| BseBI | CCWGG | 1 cut(s) | 666 |
| BseDI | CCNNGG | 3 cut(s) | 202, 224, 665 |
| BseGI | GGATG | 1 cut(s) | 689 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 242, 243, 666, 667 |
| BseMII | CTCAG | 2 cut(s) | 176, 500 |
| BseSI | GKGCMC | 1 cut(s) | 661 |
| Bsh1236I | CGCG | 1 cut(s) | 318 |
| Bsh1285I | CGRYCG | 1 cut(s) | 131 |
| BshFI | GGCC | 2 cut(s) | 201, 257 |
| BshNI | GGYRCC | 2 cut(s) | 269, 656 |
| BshTI | ACCGGT | 1 cut(s) | 130 |
| BsiEI | CGRYCG | 1 cut(s) | 131 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 242, 243, 666, 667 |
| BsmAI | GTCTC | 3 cut(s) | 205, 470, 555 |
| BsnI | GGCC | 2 cut(s) | 201, 257 |
| Bsp1286I | GDGCHC | 1 cut(s) | 661 |
| Bsp143I | GATC | 4 cut(s) | 188, 319, 519, 541 |
| Bsp68I | TCGCGA | 1 cut(s) | 318 |
| BspACI | CCGC | 2 cut(s) | 83, 239 |
| BspANI | GGCC | 2 cut(s) | 201, 257 |
| BspCNI | CTCAG | 2 cut(s) | 175, 499 |
| BspFNI | CGCG | 1 cut(s) | 318 |
| BspHI | TCATGA | 1 cut(s) | 322 |
| BspLI | GGNNCC | 3 cut(s) | 231, 271, 658 |
| BspOI | GCTAGC | 1 cut(s) | 614 |
| BspQI | GCTCTTC | 2 cut(s) | 289, 640 |
| BspT107I | GGYRCC | 2 cut(s) | 269, 656 |
| BsrFI | RCCGGY | 1 cut(s) | 130 |
| BssAI | RCCGGY | 1 cut(s) | 130 |
| BssECI | CCNNGG | 3 cut(s) | 202, 224, 665 |
| BssMI | GATC | 4 cut(s) | 188, 319, 519, 541 |
| Bst2UI | CCWGG | 1 cut(s) | 666 |
| Bst4CI | ACNGT | 3 cut(s) | 216, 225, 464 |
| Bst6I | CTCTTC | 2 cut(s) | 289, 640 |
| BstC8I | GCNNGC | 2 cut(s) | 612, 687 |
| BstDEI | CTNAG | 5 cut(s) | 45, 162, 382, 486, 626 |
| BstDSI | CCRYGG | 2 cut(s) | 202, 224 |
| BstF5I | GGATG | 1 cut(s) | 689 |
| BstFNI | CGCG | 1 cut(s) | 318 |
| BstHHI | GCGC | 1 cut(s) | 604 |
| BstKTI | GATC | 4 cut(s) | 191, 322, 522, 544 |
| BstMAI | GTCTC | 3 cut(s) | 205, 470, 555 |
| BstMBI | GATC | 4 cut(s) | 188, 319, 519, 541 |
| BstMCI | CGRYCG | 1 cut(s) | 131 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 247, 620 |
| BstNI | CCWGG | 1 cut(s) | 666 |
| BstSCI | CCNGG | 1 cut(s) | 664 |
| BstSLI | GKGCMC | 1 cut(s) | 661 |
| BstUI | CGCG | 1 cut(s) | 318 |
| BsuI | GTATCC | 1 cut(s) | 338 |
| BsuRI | GGCC | 2 cut(s) | 201, 257 |
| BtgI | CCRYGG | 2 cut(s) | 202, 224 |
| BtsCI | GGATG | 1 cut(s) | 689 |
| BtuMI | TCGCGA | 1 cut(s) | 318 |
| Cac8I | GCNNGC | 2 cut(s) | 612, 687 |
| CciI | TCATGA | 1 cut(s) | 322 |
| CfoI | GCGC | 1 cut(s) | 604 |
| Cfr10I | RCCGGY | 1 cut(s) | 130 |
| CspAI | ACCGGT | 1 cut(s) | 130 |
| CviAII | CATG | 5 cut(s) | 197, 323, 517, 539, 575 |
| DdeI | CTNAG | 5 cut(s) | 45, 162, 382, 486, 626 |
| DpnI | GATC | 4 cut(s) | 190, 321, 521, 543 |
| DpnII | GATC | 4 cut(s) | 188, 319, 519, 541 |
| EaeI | YGGCCR | 1 cut(s) | 199 |
| Eam1104I | CTCTTC | 2 cut(s) | 289, 640 |
| EarI | CTCTTC | 2 cut(s) | 289, 640 |
| Eco57I | CTGAAG | 1 cut(s) | 272 |
| EcoRII | CCWGG | 1 cut(s) | 664 |
| FaeI | CATG | 5 cut(s) | 200, 326, 520, 542, 578 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 245, 277 |
| FatI | CATG | 5 cut(s) | 196, 322, 516, 538, 574 |
| FauI | CCCGC | 1 cut(s) | 246 |
| FokI | GGATG | 1 cut(s) | 676 |
| FspBI | CTAG | 2 cut(s) | 423, 611 |
| GlaI | GCGC | 1 cut(s) | 603 |
| HaeIII | GGCC | 2 cut(s) | 201, 257 |
| HapII | CCGG | 1 cut(s) | 131 |
| HhaI | GCGC | 1 cut(s) | 604 |
| Hin1II | CATG | 5 cut(s) | 200, 326, 520, 542, 578 |
| Hin6I | GCGC | 1 cut(s) | 602 |
| HinP1I | GCGC | 1 cut(s) | 602 |
| HinfI | GANTC | 5 cut(s) | 160, 326, 455, 503, 587 |
| HpaII | CCGG | 1 cut(s) | 131 |
| Hpy188I | TCNGA | 3 cut(s) | 159, 460, 493 |
| Hpy188III | TCNNGA | 3 cut(s) | 192, 317, 323 |
| HpyAV | CCTTC | 3 cut(s) | 85, 247, 651 |
| HpyCH4III | ACNGT | 3 cut(s) | 216, 225, 464 |
| HpyCH4V | TGCA | 1 cut(s) | 689 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 247, 620 |
| HpyF3I | CTNAG | 5 cut(s) | 45, 162, 382, 486, 626 |
| Hsp92II | CATG | 5 cut(s) | 200, 326, 520, 542, 578 |
| HspAI | GCGC | 1 cut(s) | 602 |
| Kzo9I | GATC | 4 cut(s) | 188, 319, 519, 541 |
| LguI | GCTCTTC | 2 cut(s) | 289, 640 |
| LweI | GCATC | 1 cut(s) | 698 |
| MaeI | CTAG | 2 cut(s) | 423, 611 |
| MaeIII | GTNAC | 3 cut(s) | 367, 429, 672 |
| MalI | GATC | 4 cut(s) | 190, 321, 521, 543 |
| MboI | GATC | 4 cut(s) | 188, 319, 519, 541 |
| MboII | GAAGA | 5 cut(s) | 56, 276, 552, 555, 627 |
| MhlI | GDGCHC | 1 cut(s) | 661 |
| MluCI | AATT | 3 cut(s) | 100, 300, 556 |
| MlyI | GAGTC | 3 cut(s) | 154, 464, 596 |
| MmeI | TCCRAC | 1 cut(s) | 615 |
| MnlI | CCTC | 8 cut(s) | 99, 109, 243, 382, 493, 520, 672, 705 |
| MseI | TTAA | 3 cut(s) | 477, 534, 555 |
| MslI | CAYNNNNRTG | 1 cut(s) | 201 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 1 cut(s) | 666 |
| MvaI | CCWGG | 1 cut(s) | 666 |
| MvnI | CGCG | 1 cut(s) | 318 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 247, 620 |
| NdeII | GATC | 4 cut(s) | 188, 319, 519, 541 |
| NheI | GCTAGC | 1 cut(s) | 610 |
| NlaIII | CATG | 5 cut(s) | 200, 326, 520, 542, 578 |
| NlaIV | GGNNCC | 3 cut(s) | 231, 271, 658 |
| NruI | TCGCGA | 1 cut(s) | 318 |
| PagI | TCATGA | 1 cut(s) | 322 |
| PciSI | GCTCTTC | 2 cut(s) | 289, 640 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 519 |
| PfeI | GAWTC | 2 cut(s) | 326, 503 |
| PinAI | ACCGGT | 1 cut(s) | 130 |
| PleI | GAGTC | 3 cut(s) | 154, 463, 595 |
| PpsI | GAGTC | 3 cut(s) | 154, 463, 595 |
| Psp6I | CCWGG | 1 cut(s) | 664 |
| PspGI | CCWGG | 1 cut(s) | 664 |
| PspN4I | GGNNCC | 3 cut(s) | 231, 271, 658 |
| RruI | TCGCGA | 1 cut(s) | 318 |
| RseI | CAYNNNNRTG | 1 cut(s) | 201 |
| SapI | GCTCTTC | 2 cut(s) | 289, 640 |
| SaqAI | TTAA | 3 cut(s) | 477, 534, 555 |
| Sau3AI | GATC | 4 cut(s) | 188, 319, 519, 541 |
| SchI | GAGTC | 3 cut(s) | 154, 464, 596 |
| ScrFI | CCNGG | 1 cut(s) | 666 |
| SduI | GDGCHC | 1 cut(s) | 661 |
| SetI | ASST | 5 cut(s) | 110, 168, 284, 612, 616 |
| SfaNI | GCATC | 1 cut(s) | 698 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 201 |
| Sse9I | AATT | 3 cut(s) | 100, 300, 556 |
| SsiI | CCGC | 2 cut(s) | 83, 239 |
| SspMI | CTAG | 2 cut(s) | 423, 611 |
| StyD4I | CCNGG | 1 cut(s) | 664 |
| TaaI | ACNGT | 3 cut(s) | 216, 225, 464 |
| TaqI | TCGA | 1 cut(s) | 187 |
| TasI | AATT | 3 cut(s) | 100, 300, 556 |
| TfiI | GAWTC | 2 cut(s) | 326, 503 |
| Tru1I | TTAA | 3 cut(s) | 477, 534, 555 |
| Tru9I | TTAA | 3 cut(s) | 477, 534, 555 |
| TspDTI | ATGAA | 1 cut(s) | 339 |
| TspGWI | ACGGA | 1 cut(s) | 687 |
| XapI | RAATTY | 1 cut(s) | 100 |
| XspI | CTAG | 2 cut(s) | 423, 611 |