Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 524, 1276 |
| AccII | CGCG | 1 cut(s) | 14 |
| AciI | CCGC | 4 cut(s) | 12, 14, 1038, 1220 |
| AclWI | GGATC | 4 cut(s) | 170, 223, 236, 1316 |
| AcoI | YGGCCR | 1 cut(s) | 198 |
| AcsI | RAATTY | 4 cut(s) | 572, 730, 783, 1168 |
| AcyI | GRCGYC | 1 cut(s) | 324 |
| AfaI | GTAC | 2 cut(s) | 710, 926 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 524, 628, 815, 1073, 1276, 1331 |
| AflIII | ACRYGT | 1 cut(s) | 740 |
| AjnI | CCWGG | 3 cut(s) | 281, 650, 967 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 774, 806 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 131, 163 |
| AluBI | AGCT | 4 cut(s) | 163, 306, 639, 1200 |
| AluI | AGCT | 4 cut(s) | 163, 306, 639, 1200 |
| Alw26I | GTCTC | 3 cut(s) | 52, 114, 1329 |
| AlwI | GGATC | 4 cut(s) | 170, 223, 236, 1316 |
| Ama87I | CYCGRG | 1 cut(s) | 6 |
| AoxI | GGCC | 6 cut(s) | 198, 208, 426, 630, 806, 862 |
| ApeKI | GCWGC | 1 cut(s) | 1382 |
| ApoI | RAATTY | 4 cut(s) | 572, 730, 783, 1168 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 92, 124, 292, 324 |
| AseI | ATTAAT | 1 cut(s) | 1433 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 164, 768 |
| AspLEI | GCGC | 1 cut(s) | 847 |
| AspS9I | GGNCC | 2 cut(s) | 631, 1030 |
| AsuC2I | CCSGG | 1 cut(s) | 404 |
| AsuHPI | GGTGA | 1 cut(s) | 298 |
| AsuII | TTCGAA | 1 cut(s) | 904 |
| AvaI | CYCGRG | 1 cut(s) | 6 |
| AvaII | GGWCC | 1 cut(s) | 1030 |
| BamHI | GGATCC | 1 cut(s) | 228 |
| BbvCI | CCTCAGC | 1 cut(s) | 1034 |
| BbvI | GCAGC | 1 cut(s) | 1369 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 433, 467 |
| BciT130I | CCWGG | 3 cut(s) | 283, 652, 969 |
| BcnI | CCSGG | 1 cut(s) | 404 |
| BcoDI | GTCTC | 3 cut(s) | 52, 114, 1329 |
| BfaI | CTAG | 2 cut(s) | 441, 878 |
| BfmI | CTRYAG | 2 cut(s) | 810, 1371 |
| BisI | GCNGC | 2 cut(s) | 12, 1383 |
| BlsI | GCNGC | 2 cut(s) | 13, 1384 |
| Bme1390I | CCNGG | 4 cut(s) | 283, 404, 652, 969 |
| Bme18I | GGWCC | 1 cut(s) | 1030 |
| BmeT110I | CYCGRG | 1 cut(s) | 6 |
| BmgT120I | GGNCC | 2 cut(s) | 631, 1030 |
| BmiI | GGNNCC | 2 cut(s) | 230, 895 |
| BmrFI | CCNGG | 4 cut(s) | 283, 404, 652, 969 |
| BmrI | ACTGGG | 2 cut(s) | 91, 997 |
| BmsI | GCATC | 3 cut(s) | 160, 715, 817 |
| BmuI | ACTGGG | 2 cut(s) | 91, 997 |
| Bpu10I | CCTNAGC | 2 cut(s) | 635, 1034 |
| Bpu14I | TTCGAA | 1 cut(s) | 904 |
| BpuEI | CTTGAG | 5 cut(s) | 119, 233, 563, 1046, 1150 |
| BpuMI | CCSGG | 1 cut(s) | 404 |
| Bsa29I | ATCGAT | 1 cut(s) | 54 |
| BsaBI | GATNNNNATC | 1 cut(s) | 174 |
| BsaHI | GRCGYC | 1 cut(s) | 324 |
| BsaJI | CCNNGG | 6 cut(s) | 12, 282, 650, 651, 967, 968 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 524, 628, 815, 1073, 1276, 1331 |
| Bse118I | RCCGGY | 2 cut(s) | 200, 1066 |
| Bse1I | ACTGG | 3 cut(s) | 86, 706, 992 |
| Bse3DI | GCAATG | 4 cut(s) | 96, 135, 414, 1103 |
| Bse8I | GATNNNNATC | 1 cut(s) | 174 |
| BseBI | CCWGG | 3 cut(s) | 283, 652, 969 |
| BseCI | ATCGAT | 1 cut(s) | 54 |
| BseDI | CCNNGG | 6 cut(s) | 12, 282, 650, 651, 967, 968 |
| BseGI | GGATG | 4 cut(s) | 702, 809, 832, 1305 |
| BseJI | GATNNNNATC | 1 cut(s) | 174 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 524, 628, 815, 1073, 1276, 1331 |
| BseMI | GCAATG | 4 cut(s) | 96, 135, 414, 1103 |
| BseMII | CTCAG | 1 cut(s) | 1048 |
| BseNI | ACTGG | 3 cut(s) | 86, 706, 992 |
| BseXI | GCAGC | 1 cut(s) | 1369 |
| BsgI | GTGCAG | 1 cut(s) | 581 |
| Bsh1236I | CGCG | 1 cut(s) | 14 |
| Bsh1285I | CGRYCG | 1 cut(s) | 54 |
| BshFI | GGCC | 6 cut(s) | 200, 210, 428, 632, 808, 864 |
| BshVI | ATCGAT | 1 cut(s) | 54 |
| BsiEI | CGRYCG | 1 cut(s) | 54 |
| BsiHKCI | CYCGRG | 1 cut(s) | 6 |
| BsiSI | CCGG | 3 cut(s) | 201, 404, 1067 |
| BslFI | GGGAC | 1 cut(s) | 986 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 524, 628, 815, 1073, 1276, 1331 |
| BsmAI | GTCTC | 3 cut(s) | 52, 114, 1329 |
| BsmFI | GGGAC | 1 cut(s) | 986 |
| BsnI | GGCC | 6 cut(s) | 200, 210, 428, 632, 808, 864 |
| BsoBI | CYCGRG | 1 cut(s) | 6 |
| Bsp119I | TTCGAA | 1 cut(s) | 904 |
| Bsp143I | GATC | 5 cut(s) | 51, 55, 175, 228, 1321 |
| BspACI | CCGC | 4 cut(s) | 12, 14, 1038, 1220 |
| BspANI | GGCC | 6 cut(s) | 200, 210, 428, 632, 808, 864 |
| BspCNI | CTCAG | 1 cut(s) | 1047 |
| BspDI | ATCGAT | 1 cut(s) | 54 |
| BspFNI | CGCG | 1 cut(s) | 14 |
| BspHI | TCATGA | 1 cut(s) | 1416 |
| BspLI | GGNNCC | 2 cut(s) | 230, 895 |
| BspPI | GGATC | 4 cut(s) | 170, 223, 236, 1316 |
| BspT104I | TTCGAA | 1 cut(s) | 904 |
| BsrDI | GCAATG | 4 cut(s) | 96, 135, 414, 1103 |
| BsrFI | RCCGGY | 2 cut(s) | 200, 1066 |
| BsrI | ACTGG | 3 cut(s) | 86, 706, 992 |
| BssAI | RCCGGY | 2 cut(s) | 200, 1066 |
| BssECI | CCNNGG | 6 cut(s) | 12, 282, 650, 651, 967, 968 |
| BssMI | GATC | 5 cut(s) | 51, 55, 175, 228, 1321 |
| BssNI | GRCGYC | 1 cut(s) | 324 |
| Bst2UI | CCWGG | 3 cut(s) | 283, 652, 969 |
| Bst4CI | ACNGT | 1 cut(s) | 1340 |
| Bst6I | CTCTTC | 1 cut(s) | 906 |
| BstACI | GRCGYC | 1 cut(s) | 324 |
| BstBI | TTCGAA | 1 cut(s) | 904 |
| BstC8I | GCNNGC | 1 cut(s) | 1162 |
| BstDEI | CTNAG | 4 cut(s) | 623, 635, 1017, 1034 |
| BstDSI | CCRYGG | 1 cut(s) | 12 |
| BstEII | GGTNACC | 1 cut(s) | 469 |
| BstF5I | GGATG | 4 cut(s) | 702, 809, 832, 1305 |
| BstFNI | CGCG | 1 cut(s) | 14 |
| BstHHI | GCGC | 1 cut(s) | 847 |
| BstKTI | GATC | 5 cut(s) | 54, 58, 178, 231, 1324 |
| BstMAI | GTCTC | 3 cut(s) | 52, 114, 1329 |
| BstMBI | GATC | 5 cut(s) | 51, 55, 175, 228, 1321 |
| BstMCI | CGRYCG | 1 cut(s) | 54 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstNI | CCWGG | 3 cut(s) | 283, 652, 969 |
| BstNSI | RCATGY | 2 cut(s) | 744, 1287 |
| BstPI | GGTNACC | 1 cut(s) | 469 |
| BstSCI | CCNGG | 4 cut(s) | 281, 402, 650, 967 |
| BstSFI | CTRYAG | 2 cut(s) | 810, 1371 |
| BstUI | CGCG | 1 cut(s) | 14 |
| BstV1I | GCAGC | 1 cut(s) | 1369 |
| BstX2I | RGATCY | 3 cut(s) | 175, 228, 1321 |
| BstYI | RGATCY | 3 cut(s) | 175, 228, 1321 |
| Bsu15I | ATCGAT | 1 cut(s) | 54 |
| BsuRI | GGCC | 6 cut(s) | 200, 210, 428, 632, 808, 864 |
| BsuTUI | ATCGAT | 1 cut(s) | 54 |
| BtgI | CCRYGG | 1 cut(s) | 12 |
| BtgZI | GCGATG | 1 cut(s) | 1131 |
| BtsCI | GGATG | 4 cut(s) | 702, 809, 832, 1305 |
| BtsIMutI | CAGTG | 2 cut(s) | 752, 985 |
| Cac8I | GCNNGC | 1 cut(s) | 1162 |
| CciI | TCATGA | 1 cut(s) | 1416 |
| CfoI | GCGC | 1 cut(s) | 847 |
| Cfr10I | RCCGGY | 2 cut(s) | 200, 1066 |
| Cfr13I | GGNCC | 2 cut(s) | 631, 1030 |
| Cfr42I | CCGCGG | 1 cut(s) | 15 |
| ClaI | ATCGAT | 1 cut(s) | 54 |
| CseI | GACGC | 3 cut(s) | 200, 313, 971 |
| Csp6I | GTAC | 2 cut(s) | 709, 925 |
| CviAII | CATG | 5 cut(s) | 741, 1203, 1223, 1284, 1417 |
| CviQI | GTAC | 2 cut(s) | 709, 925 |
| DdeI | CTNAG | 4 cut(s) | 623, 635, 1017, 1034 |
| DpnI | GATC | 5 cut(s) | 53, 57, 177, 230, 1323 |
| DpnII | GATC | 5 cut(s) | 51, 55, 175, 228, 1321 |
| EaeI | YGGCCR | 1 cut(s) | 198 |
| Eam1104I | CTCTTC | 1 cut(s) | 906 |
| EarI | CTCTTC | 1 cut(s) | 906 |
| Eco147I | AGGCCT | 2 cut(s) | 210, 428 |
| Eco32I | GATATC | 1 cut(s) | 451 |
| Eco47I | GGWCC | 1 cut(s) | 1030 |
| Eco88I | CYCGRG | 1 cut(s) | 6 |
| Eco91I | GGTNACC | 1 cut(s) | 469 |
| EcoO65I | GGTNACC | 1 cut(s) | 469 |
| EcoRII | CCWGG | 3 cut(s) | 281, 650, 967 |
| EcoRV | GATATC | 1 cut(s) | 451 |
| FaeI | CATG | 5 cut(s) | 744, 1206, 1226, 1287, 1420 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 147, 179, 912, 944 |
| FaqI | GGGAC | 1 cut(s) | 986 |
| FatI | CATG | 5 cut(s) | 740, 1202, 1222, 1283, 1416 |
| Fnu4HI | GCNGC | 2 cut(s) | 12, 1383 |
| FokI | GGATG | 4 cut(s) | 689, 816, 839, 1312 |
| Fsp4HI | GCNGC | 2 cut(s) | 12, 1383 |
| FspBI | CTAG | 2 cut(s) | 441, 878 |
| GlaI | GCGC | 1 cut(s) | 846 |
| GluI | GCNGC | 2 cut(s) | 12, 1383 |
| HaeIII | GGCC | 6 cut(s) | 200, 210, 428, 632, 808, 864 |
| HapII | CCGG | 3 cut(s) | 201, 404, 1067 |
| HgaI | GACGC | 3 cut(s) | 200, 313, 971 |
| HhaI | GCGC | 1 cut(s) | 847 |
| Hin1I | GRCGYC | 1 cut(s) | 324 |
| Hin1II | CATG | 5 cut(s) | 744, 1206, 1226, 1287, 1420 |
| Hin6I | GCGC | 1 cut(s) | 845 |
| HinP1I | GCGC | 1 cut(s) | 845 |
| HincII | GTYRAC | 1 cut(s) | 607 |
| HindII | GTYRAC | 1 cut(s) | 607 |
| HindIII | AAGCTT | 1 cut(s) | 161 |
| HinfI | GANTC | 3 cut(s) | 437, 500, 565 |
| HpaI | GTTAAC | 1 cut(s) | 607 |
| HpaII | CCGG | 3 cut(s) | 201, 404, 1067 |
| HphI | GGTGA | 1 cut(s) | 298 |
| Hpy166II | GTNNAC | 2 cut(s) | 607, 925 |
| Hpy188I | TCNGA | 8 cut(s) | 455, 511, 523, 536, 643, 803, 1174, 1350 |
| Hpy188III | TCNNGA | 7 cut(s) | 49, 151, 692, 773, 871, 1214, 1417 |
| Hpy8I | GTNNAC | 2 cut(s) | 607, 925 |
| Hpy99I | CGWCG | 1 cut(s) | 329 |
| HpyAV | CCTTC | 5 cut(s) | 189, 490, 628, 758, 1432 |
| HpyCH4III | ACNGT | 1 cut(s) | 1340 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 4 cut(s) | 623, 635, 1017, 1034 |
| Hsp92I | GRCGYC | 1 cut(s) | 324 |
| Hsp92II | CATG | 5 cut(s) | 744, 1206, 1226, 1287, 1420 |
| HspAI | GCGC | 1 cut(s) | 845 |
| KspAI | GTTAAC | 1 cut(s) | 607 |
| KspI | CCGCGG | 1 cut(s) | 15 |
| Kzo9I | GATC | 5 cut(s) | 51, 55, 175, 228, 1321 |
| Lsp1109I | GCAGC | 1 cut(s) | 1369 |
| LweI | GCATC | 3 cut(s) | 160, 715, 817 |
| MaeI | CTAG | 2 cut(s) | 441, 878 |
| MaeIII | GTNAC | 7 cut(s) | 298, 371, 469, 743, 818, 983, 1312 |
| MalI | GATC | 5 cut(s) | 53, 57, 177, 230, 1323 |
| MboI | GATC | 5 cut(s) | 51, 55, 175, 228, 1321 |
| MboII | GAAGA | 3 cut(s) | 893, 1331, 1417 |
| MfeI | CAATTG | 1 cut(s) | 1259 |
| MflI | RGATCY | 3 cut(s) | 175, 228, 1321 |
| MluCI | AATT | 9 cut(s) | 572, 730, 783, 789, 839, 1168, 1246, 1259, 1288 |
| MmeI | TCCRAC | 2 cut(s) | 328, 781 |
| MnlI | CCTC | 7 cut(s) | 208, 790, 883, 909, 1043, 1273, 1336 |
| MroXI | GAANNNNTTC | 2 cut(s) | 164, 768 |
| MseI | TTAA | 9 cut(s) | 245, 365, 390, 546, 606, 1109, 1188, 1293, 1433 |
| MspA1I | CMGCKG | 2 cut(s) | 14, 1038 |
| MspI | CCGG | 3 cut(s) | 201, 404, 1067 |
| MspR9I | CCNGG | 4 cut(s) | 283, 404, 652, 969 |
| MunI | CAATTG | 1 cut(s) | 1259 |
| MvaI | CCWGG | 3 cut(s) | 283, 652, 969 |
| MvnI | CGCG | 1 cut(s) | 14 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NciI | CCSGG | 1 cut(s) | 404 |
| NdeII | GATC | 5 cut(s) | 51, 55, 175, 228, 1321 |
| NlaIII | CATG | 5 cut(s) | 744, 1206, 1226, 1287, 1420 |
| NlaIV | GGNNCC | 2 cut(s) | 230, 895 |
| NmuCI | GTSAC | 2 cut(s) | 298, 983 |
| NspI | RCATGY | 2 cut(s) | 744, 1287 |
| NspV | TTCGAA | 1 cut(s) | 904 |
| PaeR7I | CTCGAG | 1 cut(s) | 6 |
| PagI | TCATGA | 1 cut(s) | 1416 |
| PasI | CCCWGGG | 2 cut(s) | 651, 968 |
| PceI | AGGCCT | 2 cut(s) | 210, 428 |
| PciI | ACATGT | 1 cut(s) | 740 |
| PdmI | GAANNNNTTC | 2 cut(s) | 164, 768 |
| PfeI | GAWTC | 3 cut(s) | 437, 500, 565 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 524, 1276 |
| PkrI | GCNGC | 2 cut(s) | 13, 1384 |
| Ple19I | CGATCG | 1 cut(s) | 54 |
| PscI | ACATGT | 1 cut(s) | 740 |
| PshBI | ATTAAT | 1 cut(s) | 1433 |
| Psp6I | CCWGG | 3 cut(s) | 281, 650, 967 |
| PspEI | GGTNACC | 1 cut(s) | 469 |
| PspGI | CCWGG | 3 cut(s) | 281, 650, 967 |
| PspN4I | GGNNCC | 2 cut(s) | 230, 895 |
| PspPI | GGNCC | 2 cut(s) | 631, 1030 |
| PspXI | VCTCGAGB | 1 cut(s) | 6 |
| PsuI | RGATCY | 3 cut(s) | 175, 228, 1321 |
| PvuI | CGATCG | 1 cut(s) | 54 |
| RsaI | GTAC | 2 cut(s) | 710, 926 |
| RsaNI | GTAC | 2 cut(s) | 709, 925 |
| SacII | CCGCGG | 1 cut(s) | 15 |
| SaqAI | TTAA | 9 cut(s) | 245, 365, 390, 546, 606, 1109, 1188, 1293, 1433 |
| SatI | GCNGC | 2 cut(s) | 12, 1383 |
| Sau3AI | GATC | 5 cut(s) | 51, 55, 175, 228, 1321 |
| Sau96I | GGNCC | 2 cut(s) | 631, 1030 |
| ScrFI | CCNGG | 4 cut(s) | 283, 404, 652, 969 |
| SfaNI | GCATC | 3 cut(s) | 160, 715, 817 |
| SfcI | CTRYAG | 2 cut(s) | 810, 1371 |
| Sfr274I | CTCGAG | 1 cut(s) | 6 |
| Sfr303I | CCGCGG | 1 cut(s) | 15 |
| SfuI | TTCGAA | 1 cut(s) | 904 |
| SgrBI | CCGCGG | 1 cut(s) | 15 |
| SinI | GGWCC | 1 cut(s) | 1030 |
| SlaI | CTCGAG | 1 cut(s) | 6 |
| SmlI | CTYRAG | 6 cut(s) | 6, 134, 212, 578, 1061, 1129 |
| SmoI | CTYRAG | 6 cut(s) | 6, 134, 212, 578, 1061, 1129 |
| Sse9I | AATT | 9 cut(s) | 572, 730, 783, 789, 839, 1168, 1246, 1259, 1288 |
| SseBI | AGGCCT | 2 cut(s) | 210, 428 |
| SsiI | CCGC | 4 cut(s) | 12, 14, 1038, 1220 |
| SspMI | CTAG | 2 cut(s) | 441, 878 |
| StuI | AGGCCT | 2 cut(s) | 210, 428 |
| StyD4I | CCNGG | 4 cut(s) | 281, 402, 650, 967 |
| TaaI | ACNGT | 1 cut(s) | 1340 |
| TaqI | TCGA | 9 cut(s) | 7, 35, 50, 54, 168, 503, 904, 978, 1146 |
| TasI | AATT | 9 cut(s) | 572, 730, 783, 789, 839, 1168, 1246, 1259, 1288 |
| TatI | WGTACW | 1 cut(s) | 708 |
| TauI | GCSGC | 1 cut(s) | 14 |
| TfiI | GAWTC | 3 cut(s) | 437, 500, 565 |
| Tru1I | TTAA | 9 cut(s) | 245, 365, 390, 546, 606, 1109, 1188, 1293, 1433 |
| Tru9I | TTAA | 9 cut(s) | 245, 365, 390, 546, 606, 1109, 1188, 1293, 1433 |
| TscAI | CASTG | 2 cut(s) | 759, 992 |
| TseFI | GTSAC | 2 cut(s) | 298, 983 |
| TseI | GCWGC | 1 cut(s) | 1382 |
| Tsp45I | GTSAC | 2 cut(s) | 298, 983 |
| TspDTI | ATGAA | 2 cut(s) | 513, 1239 |
| TspGWI | ACGGA | 1 cut(s) | 1023 |
| TspRI | CASTG | 2 cut(s) | 759, 992 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 524, 1276 |
| VpaK11BI | GGWCC | 1 cut(s) | 1030 |
| VspI | ATTAAT | 1 cut(s) | 1433 |
| XapI | RAATTY | 4 cut(s) | 572, 730, 783, 1168 |
| XceI | RCATGY | 2 cut(s) | 744, 1287 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 838 |
| XhoI | CTCGAG | 1 cut(s) | 6 |
| XmnI | GAANNNNTTC | 2 cut(s) | 164, 768 |
| XspI | CTAG | 2 cut(s) | 441, 878 |