Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 172 |
| Acc36I | ACCTGC | 1 cut(s) | 172 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 318 |
| AccI | GTMKAC | 1 cut(s) | 932 |
| AclWI | GGATC | 2 cut(s) | 618, 900 |
| AcsI | RAATTY | 1 cut(s) | 582 |
| AfaI | GTAC | 3 cut(s) | 282, 391, 706 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 318, 792 |
| AflII | CTTAAG | 1 cut(s) | 787 |
| AflIII | ACRYGT | 1 cut(s) | 628 |
| AgsI | TTSAA | 4 cut(s) | 164, 477, 671, 986 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 40 |
| AjnI | CCWGG | 1 cut(s) | 737 |
| AluBI | AGCT | 6 cut(s) | 17, 235, 368, 729, 911, 923 |
| AluI | AGCT | 6 cut(s) | 17, 235, 368, 729, 911, 923 |
| Alw21I | GWGCWC | 1 cut(s) | 330 |
| Alw26I | GTCTC | 1 cut(s) | 648 |
| AlwI | GGATC | 2 cut(s) | 618, 900 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 38 |
| ApeKI | GCWGC | 2 cut(s) | 362, 365 |
| ApoI | RAATTY | 1 cut(s) | 582 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 406, 438 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 484 |
| AsuHPI | GGTGA | 3 cut(s) | 37, 301, 895 |
| AxyI | CCTNAGG | 1 cut(s) | 252 |
| Bbv12I | GWGCWC | 1 cut(s) | 330 |
| BbvCI | CCTCAGC | 1 cut(s) | 907 |
| BbvI | GCAGC | 2 cut(s) | 349, 377 |
| BccI | CCATC | 1 cut(s) | 350 |
| BceAI | ACGGC | 1 cut(s) | 681 |
| BciT130I | CCWGG | 1 cut(s) | 739 |
| BciVI | GTATCC | 1 cut(s) | 219 |
| BcoDI | GTCTC | 1 cut(s) | 648 |
| BfaI | CTAG | 6 cut(s) | 222, 393, 555, 624, 882, 936 |
| BfmI | CTRYAG | 1 cut(s) | 363 |
| BfrI | CTTAAG | 1 cut(s) | 787 |
| BfuAI | ACCTGC | 1 cut(s) | 172 |
| BfuI | GTATCC | 1 cut(s) | 219 |
| BisI | GCNGC | 2 cut(s) | 363, 366 |
| BlsI | GCNGC | 2 cut(s) | 364, 367 |
| BmcAI | AGTACT | 1 cut(s) | 391 |
| Bme1390I | CCNGG | 1 cut(s) | 739 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 40 |
| BmrFI | CCNGG | 1 cut(s) | 739 |
| BmsI | GCATC | 3 cut(s) | 94, 540, 772 |
| Bpu10I | CCTNAGC | 2 cut(s) | 564, 907 |
| BpuEI | CTTGAG | 2 cut(s) | 406, 630 |
| Bsa29I | ATCGAT | 1 cut(s) | 613 |
| BsaJI | CCNNGG | 1 cut(s) | 969 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 318, 792 |
| Bse1I | ACTGG | 2 cut(s) | 172, 196 |
| Bse21I | CCTNAGG | 1 cut(s) | 252 |
| Bse3DI | GCAATG | 1 cut(s) | 670 |
| BseBI | CCWGG | 1 cut(s) | 739 |
| BseCI | ATCGAT | 1 cut(s) | 613 |
| BseDI | CCNNGG | 1 cut(s) | 969 |
| BseGI | GGATG | 3 cut(s) | 328, 724, 787 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 318, 792 |
| BseMI | GCAATG | 1 cut(s) | 670 |
| BseMII | CTCAG | 4 cut(s) | 30, 266, 921, 958 |
| BseNI | ACTGG | 2 cut(s) | 172, 196 |
| BseXI | GCAGC | 2 cut(s) | 349, 377 |
| BshVI | ATCGAT | 1 cut(s) | 613 |
| BsiHKAI | GWGCWC | 1 cut(s) | 330 |
| BslFI | GGGAC | 1 cut(s) | 202 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 318, 792 |
| BsmAI | GTCTC | 1 cut(s) | 648 |
| BsmFI | GGGAC | 1 cut(s) | 202 |
| BsmI | GAATGC | 3 cut(s) | 103, 547, 883 |
| Bsp1286I | GDGCHC | 1 cut(s) | 330 |
| Bsp1407I | TGTACA | 1 cut(s) | 280 |
| Bsp143I | GATC | 2 cut(s) | 610, 892 |
| BspCNI | CTCAG | 4 cut(s) | 31, 265, 920, 957 |
| BspDI | ATCGAT | 1 cut(s) | 613 |
| BspMAI | CTGCAG | 1 cut(s) | 367 |
| BspMI | ACCTGC | 1 cut(s) | 172 |
| BspPI | GGATC | 2 cut(s) | 618, 900 |
| BspTI | CTTAAG | 1 cut(s) | 787 |
| BsrDI | GCAATG | 1 cut(s) | 670 |
| BsrGI | TGTACA | 1 cut(s) | 280 |
| BsrI | ACTGG | 2 cut(s) | 172, 196 |
| BssECI | CCNNGG | 1 cut(s) | 969 |
| BssMI | GATC | 2 cut(s) | 610, 892 |
| BssT1I | CCWWGG | 1 cut(s) | 969 |
| Bst2UI | CCWGG | 1 cut(s) | 739 |
| Bst4CI | ACNGT | 4 cut(s) | 57, 289, 448, 704 |
| Bst6I | CTCTTC | 1 cut(s) | 498 |
| BstAFI | CTTAAG | 1 cut(s) | 787 |
| BstAUI | TGTACA | 1 cut(s) | 280 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 15 |
| BstDEI | CTNAG | 7 cut(s) | 39, 252, 546, 564, 822, 907, 944 |
| BstF5I | GGATG | 3 cut(s) | 328, 724, 787 |
| BstKTI | GATC | 2 cut(s) | 613, 895 |
| BstMAI | GTCTC | 1 cut(s) | 648 |
| BstMBI | GATC | 2 cut(s) | 610, 892 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 10, 14, 660 |
| BstNI | CCWGG | 1 cut(s) | 739 |
| BstNSI | RCATGY | 1 cut(s) | 632 |
| BstSCI | CCNGG | 1 cut(s) | 737 |
| BstSFI | CTRYAG | 1 cut(s) | 363 |
| BstV1I | GCAGC | 2 cut(s) | 349, 377 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 745 |
| Bsu15I | ATCGAT | 1 cut(s) | 613 |
| Bsu36I | CCTNAGG | 1 cut(s) | 252 |
| BsuI | GTATCC | 1 cut(s) | 219 |
| BsuTUI | ATCGAT | 1 cut(s) | 613 |
| BtsCI | GGATG | 3 cut(s) | 328, 724, 787 |
| BtsI | GCAGTG | 1 cut(s) | 570 |
| BtsIMutI | CAGTG | 1 cut(s) | 570 |
| BveI | ACCTGC | 1 cut(s) | 172 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 15 |
| CaiI | CAGNNNCTG | 1 cut(s) | 38 |
| ClaI | ATCGAT | 1 cut(s) | 613 |
| Csp6I | GTAC | 3 cut(s) | 281, 390, 705 |
| CviAII | CATG | 3 cut(s) | 417, 629, 928 |
| CviQI | GTAC | 3 cut(s) | 281, 390, 705 |
| DdeI | CTNAG | 7 cut(s) | 39, 252, 546, 564, 822, 907, 944 |
| DpnI | GATC | 2 cut(s) | 612, 894 |
| DpnII | GATC | 2 cut(s) | 610, 892 |
| DriI | GACNNNNNGTC | 1 cut(s) | 40 |
| Eam1104I | CTCTTC | 1 cut(s) | 498 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 40 |
| EarI | CTCTTC | 1 cut(s) | 498 |
| Eco130I | CCWWGG | 1 cut(s) | 969 |
| Eco81I | CCTNAGG | 1 cut(s) | 252 |
| EcoRII | CCWGG | 1 cut(s) | 737 |
| EcoT14I | CCWWGG | 1 cut(s) | 969 |
| ErhI | CCWWGG | 1 cut(s) | 969 |
| FaeI | CATG | 3 cut(s) | 420, 632, 931 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 469, 501 |
| FaqI | GGGAC | 1 cut(s) | 202 |
| FatI | CATG | 3 cut(s) | 416, 628, 927 |
| FauNDI | CATATG | 1 cut(s) | 277 |
| FblI | GTMKAC | 1 cut(s) | 932 |
| Fnu4HI | GCNGC | 2 cut(s) | 363, 366 |
| FokI | GGATG | 3 cut(s) | 335, 731, 794 |
| Fsp4HI | GCNGC | 2 cut(s) | 363, 366 |
| FspBI | CTAG | 6 cut(s) | 222, 393, 555, 624, 882, 936 |
| GluI | GCNGC | 2 cut(s) | 363, 366 |
| Hin1II | CATG | 3 cut(s) | 420, 632, 931 |
| HincII | GTYRAC | 1 cut(s) | 272 |
| HindII | GTYRAC | 1 cut(s) | 272 |
| HindIII | AAGCTT | 1 cut(s) | 15 |
| HinfI | GANTC | 5 cut(s) | 41, 268, 620, 641, 942 |
| HphI | GGTGA | 3 cut(s) | 37, 301, 895 |
| Hpy166II | GTNNAC | 3 cut(s) | 272, 444, 933 |
| Hpy188I | TCNGA | 3 cut(s) | 34, 519, 811 |
| Hpy188III | TCNNGA | 5 cut(s) | 80, 353, 477, 538, 624 |
| Hpy8I | GTNNAC | 3 cut(s) | 272, 444, 933 |
| HpyAV | CCTTC | 3 cut(s) | 129, 249, 510 |
| HpyCH4III | ACNGT | 4 cut(s) | 57, 289, 448, 704 |
| HpyCH4IV | ACGT | 1 cut(s) | 70 |
| HpyCH4V | TGCA | 4 cut(s) | 365, 512, 663, 976 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 10, 14, 660 |
| HpyF3I | CTNAG | 7 cut(s) | 39, 252, 546, 564, 822, 907, 944 |
| HpySE526I | ACGT | 1 cut(s) | 70 |
| Hsp92II | CATG | 3 cut(s) | 420, 632, 931 |
| Kzo9I | GATC | 2 cut(s) | 610, 892 |
| LmnI | GCTCC | 1 cut(s) | 344 |
| LpnPI | CCDG | 9 cut(s) | 51, 93, 153, 167, 177, 239, 523, 724, 751 |
| Lsp1109I | GCAGC | 2 cut(s) | 349, 377 |
| LweI | GCATC | 3 cut(s) | 94, 540, 772 |
| MaeI | CTAG | 6 cut(s) | 222, 393, 555, 624, 882, 936 |
| MaeII | ACGT | 1 cut(s) | 70 |
| MaeIII | GTNAC | 3 cut(s) | 568, 698, 795 |
| MalI | GATC | 2 cut(s) | 612, 894 |
| MboI | GATC | 2 cut(s) | 610, 892 |
| MboII | GAAGA | 2 cut(s) | 416, 485 |
| MhlI | GDGCHC | 1 cut(s) | 330 |
| MluCI | AATT | 6 cut(s) | 88, 316, 582, 635, 815, 949 |
| MlyI | GAGTC | 4 cut(s) | 50, 277, 650, 936 |
| MmeI | TCCRAC | 1 cut(s) | 759 |
| MnlI | CCTC | 5 cut(s) | 15, 261, 318, 352, 916 |
| MroXI | GAANNNNTTC | 1 cut(s) | 484 |
| MseI | TTAA | 1 cut(s) | 788 |
| MspCI | CTTAAG | 1 cut(s) | 787 |
| MspR9I | CCNGG | 1 cut(s) | 739 |
| Mva1269I | GAATGC | 3 cut(s) | 103, 547, 883 |
| MvaI | CCWGG | 1 cut(s) | 739 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 10, 14, 660 |
| NdeI | CATATG | 1 cut(s) | 277 |
| NdeII | GATC | 2 cut(s) | 610, 892 |
| NlaIII | CATG | 3 cut(s) | 420, 632, 931 |
| NmeAIII | GCCGAG | 1 cut(s) | 817 |
| NmuCI | GTSAC | 1 cut(s) | 568 |
| NspI | RCATGY | 1 cut(s) | 632 |
| PaqCI | CACCTGC | 1 cut(s) | 172 |
| PciI | ACATGT | 1 cut(s) | 628 |
| PctI | GAATGC | 3 cut(s) | 103, 547, 883 |
| PdmI | GAANNNNTTC | 1 cut(s) | 484 |
| PfeI | GAWTC | 1 cut(s) | 620 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 318 |
| PkrI | GCNGC | 2 cut(s) | 364, 367 |
| PleI | GAGTC | 4 cut(s) | 49, 276, 649, 936 |
| PpsI | GAGTC | 4 cut(s) | 49, 276, 649, 936 |
| PscI | ACATGT | 1 cut(s) | 628 |
| Psp6I | CCWGG | 1 cut(s) | 737 |
| PspGI | CCWGG | 1 cut(s) | 737 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 288, 320 |
| PstI | CTGCAG | 1 cut(s) | 367 |
| PstNI | CAGNNNCTG | 1 cut(s) | 38 |
| RsaI | GTAC | 3 cut(s) | 282, 391, 706 |
| RsaNI | GTAC | 3 cut(s) | 281, 390, 705 |
| SaqAI | TTAA | 1 cut(s) | 788 |
| SatI | GCNGC | 2 cut(s) | 363, 366 |
| Sau3AI | GATC | 2 cut(s) | 610, 892 |
| ScaI | AGTACT | 1 cut(s) | 391 |
| SchI | GAGTC | 4 cut(s) | 50, 277, 650, 936 |
| ScrFI | CCNGG | 1 cut(s) | 739 |
| SduI | GDGCHC | 1 cut(s) | 330 |
| SfaNI | GCATC | 3 cut(s) | 94, 540, 772 |
| SfcI | CTRYAG | 1 cut(s) | 363 |
| SmlI | CTYRAG | 3 cut(s) | 385, 645, 787 |
| SmoI | CTYRAG | 3 cut(s) | 385, 645, 787 |
| Sse9I | AATT | 6 cut(s) | 88, 316, 582, 635, 815, 949 |
| SspMI | CTAG | 6 cut(s) | 222, 393, 555, 624, 882, 936 |
| StyD4I | CCNGG | 1 cut(s) | 737 |
| StyI | CCWWGG | 1 cut(s) | 969 |
| TaaI | ACNGT | 4 cut(s) | 57, 289, 448, 704 |
| TaiI | ACGT | 1 cut(s) | 73 |
| TaqI | TCGA | 1 cut(s) | 613 |
| TasI | AATT | 6 cut(s) | 88, 316, 582, 635, 815, 949 |
| TatI | WGTACW | 3 cut(s) | 280, 389, 704 |
| TfiI | GAWTC | 1 cut(s) | 620 |
| Tru1I | TTAA | 1 cut(s) | 788 |
| Tru9I | TTAA | 1 cut(s) | 788 |
| TscAI | CASTG | 1 cut(s) | 577 |
| TseFI | GTSAC | 1 cut(s) | 568 |
| TseI | GCWGC | 2 cut(s) | 362, 365 |
| Tsp45I | GTSAC | 1 cut(s) | 568 |
| TspDTI | ATGAA | 3 cut(s) | 309, 578, 677 |
| TspRI | CASTG | 1 cut(s) | 577 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 318 |
| Vha464I | CTTAAG | 1 cut(s) | 787 |
| XapI | RAATTY | 1 cut(s) | 582 |
| XbaI | TCTAGA | 1 cut(s) | 623 |
| XceI | RCATGY | 1 cut(s) | 632 |
| XmiI | GTMKAC | 1 cut(s) | 932 |
| XmnI | GAANNNNTTC | 1 cut(s) | 484 |
| XspI | CTAG | 6 cut(s) | 222, 393, 555, 624, 882, 936 |
| ZrmI | AGTACT | 1 cut(s) | 391 |