zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 129 - 250 | 4.8e-20 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 331 |
| AciI | CCGC | 4 cut(s) | 260, 423, 572, 736 |
| AclWI | GGATC | 3 cut(s) | 70, 240, 636 |
| AcoI | YGGCCR | 1 cut(s) | 448 |
| AcsI | RAATTY | 1 cut(s) | 458 |
| AcyI | GRCGYC | 1 cut(s) | 328 |
| AfaI | GTAC | 2 cut(s) | 427, 821 |
| AflII | CTTAAG | 1 cut(s) | 377 |
| AgeI | ACCGGT | 1 cut(s) | 316 |
| AgsI | TTSAA | 4 cut(s) | 32, 559, 762, 776 |
| AjiI | CACGTC | 1 cut(s) | 351 |
| AjnI | CCWGG | 3 cut(s) | 135, 275, 681 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 32, 64 |
| AluBI | AGCT | 7 cut(s) | 146, 166, 223, 382, 488, 644, 743 |
| AluI | AGCT | 7 cut(s) | 146, 166, 223, 382, 488, 644, 743 |
| AlwI | GGATC | 3 cut(s) | 70, 240, 636 |
| Ama87I | CYCGRG | 2 cut(s) | 161, 294 |
| AoxI | GGCC | 5 cut(s) | 261, 273, 448, 535, 552 |
| ApeKI | GCWGC | 2 cut(s) | 311, 467 |
| ApoI | RAATTY | 1 cut(s) | 458 |
| AsiGI | ACCGGT | 1 cut(s) | 316 |
| AspS9I | GGNCC | 1 cut(s) | 133 |
| AsuHPI | GGTGA | 2 cut(s) | 586, 725 |
| AvaI | CYCGRG | 2 cut(s) | 161, 294 |
| AvaII | GGWCC | 1 cut(s) | 133 |
| BbsI | GAAGAC | 1 cut(s) | 353 |
| BbvCI | CCTCAGC | 1 cut(s) | 624 |
| BbvI | GCAGC | 2 cut(s) | 298, 454 |
| BccI | CCATC | 1 cut(s) | 386 |
| BceAI | ACGGC | 1 cut(s) | 435 |
| BciT130I | CCWGG | 3 cut(s) | 137, 277, 683 |
| BfaI | CTAG | 6 cut(s) | 80, 539, 641, 711, 740, 744 |
| BfmI | CTRYAG | 2 cut(s) | 69, 548 |
| BfrI | CTTAAG | 1 cut(s) | 377 |
| BisI | GCNGC | 3 cut(s) | 261, 312, 468 |
| BlsI | GCNGC | 3 cut(s) | 262, 313, 469 |
| Bme1390I | CCNGG | 3 cut(s) | 137, 277, 683 |
| Bme18I | GGWCC | 1 cut(s) | 133 |
| BmeT110I | CYCGRG | 2 cut(s) | 161, 294 |
| BmgBI | CACGTC | 1 cut(s) | 351 |
| BmgT120I | GGNCC | 1 cut(s) | 133 |
| BmiI | GGNNCC | 1 cut(s) | 134 |
| BmrFI | CCNGG | 3 cut(s) | 137, 277, 683 |
| BmrI | ACTGGG | 1 cut(s) | 139 |
| BmsI | GCATC | 3 cut(s) | 73, 298, 799 |
| BmuI | ACTGGG | 1 cut(s) | 139 |
| BpiI | GAAGAC | 1 cut(s) | 353 |
| BpmI | CTGGAG | 3 cut(s) | 158, 223, 777 |
| Bpu10I | CCTNAGC | 1 cut(s) | 624 |
| BsaBI | GATNNNNATC | 2 cut(s) | 695, 828 |
| BsaHI | GRCGYC | 1 cut(s) | 328 |
| BsaJI | CCNNGG | 4 cut(s) | 451, 618, 681, 682 |
| BsaWI | WCCGGW | 1 cut(s) | 316 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 32, 62, 775, 805 |
| Bse118I | RCCGGY | 1 cut(s) | 316 |
| Bse1I | ACTGG | 4 cut(s) | 55, 134, 522, 810 |
| Bse3DI | GCAATG | 3 cut(s) | 276, 462, 503 |
| Bse8I | GATNNNNATC | 2 cut(s) | 695, 828 |
| BseBI | CCWGG | 3 cut(s) | 137, 277, 683 |
| BseDI | CCNNGG | 4 cut(s) | 451, 618, 681, 682 |
| BseGI | GGATG | 3 cut(s) | 313, 397, 814 |
| BseJI | GATNNNNATC | 2 cut(s) | 695, 828 |
| BseMI | GCAATG | 3 cut(s) | 276, 462, 503 |
| BseMII | CTCAG | 1 cut(s) | 615 |
| BseNI | ACTGG | 4 cut(s) | 55, 134, 522, 810 |
| BseRI | GAGGAG | 3 cut(s) | 78, 299, 327 |
| BseXI | GCAGC | 2 cut(s) | 298, 454 |
| BsgI | GTGCAG | 1 cut(s) | 297 |
| BshFI | GGCC | 5 cut(s) | 263, 275, 450, 537, 554 |
| BshTI | ACCGGT | 1 cut(s) | 316 |
| BsiHKCI | CYCGRG | 2 cut(s) | 161, 294 |
| BsiSI | CCGG | 1 cut(s) | 317 |
| BslFI | GGGAC | 1 cut(s) | 45 |
| BsmFI | GGGAC | 1 cut(s) | 45 |
| BsmI | GAATGC | 1 cut(s) | 682 |
| BsnI | GGCC | 5 cut(s) | 263, 275, 450, 537, 554 |
| BsoBI | CYCGRG | 2 cut(s) | 161, 294 |
| Bsp143I | GATC | 3 cut(s) | 75, 232, 628 |
| Bsp19I | CCATGG | 1 cut(s) | 618 |
| BspACI | CCGC | 4 cut(s) | 260, 423, 572, 736 |
| BspANI | GGCC | 5 cut(s) | 263, 275, 450, 537, 554 |
| BspCNI | CTCAG | 1 cut(s) | 616 |
| BspLI | GGNNCC | 1 cut(s) | 134 |
| BspPI | GGATC | 3 cut(s) | 70, 240, 636 |
| BspTI | CTTAAG | 1 cut(s) | 377 |
| BsrDI | GCAATG | 3 cut(s) | 276, 462, 503 |
| BsrFI | RCCGGY | 1 cut(s) | 316 |
| BsrI | ACTGG | 4 cut(s) | 55, 134, 522, 810 |
| BssAI | RCCGGY | 1 cut(s) | 316 |
| BssECI | CCNNGG | 4 cut(s) | 451, 618, 681, 682 |
| BssMI | GATC | 3 cut(s) | 75, 232, 628 |
| BssNI | GRCGYC | 1 cut(s) | 328 |
| BssT1I | CCWWGG | 1 cut(s) | 618 |
| Bst2UI | CCWGG | 3 cut(s) | 137, 277, 683 |
| Bst4CI | ACNGT | 2 cut(s) | 8, 412 |
| BstACI | GRCGYC | 1 cut(s) | 328 |
| BstAFI | CTTAAG | 1 cut(s) | 377 |
| BstDEI | CTNAG | 1 cut(s) | 624 |
| BstDSI | CCRYGG | 2 cut(s) | 451, 618 |
| BstF5I | GGATG | 3 cut(s) | 313, 397, 814 |
| BstKTI | GATC | 3 cut(s) | 78, 235, 631 |
| BstMBI | GATC | 3 cut(s) | 75, 232, 628 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 163, 266, 605 |
| BstNI | CCWGG | 3 cut(s) | 137, 277, 683 |
| BstSCI | CCNGG | 3 cut(s) | 135, 275, 681 |
| BstSFI | CTRYAG | 2 cut(s) | 69, 548 |
| BstV1I | GCAGC | 2 cut(s) | 298, 454 |
| BstV2I | GAAGAC | 1 cut(s) | 353 |
| BstX2I | RGATCY | 2 cut(s) | 75, 628 |
| BstYI | RGATCY | 2 cut(s) | 75, 628 |
| BsuRI | GGCC | 5 cut(s) | 263, 275, 450, 537, 554 |
| BtgI | CCRYGG | 2 cut(s) | 451, 618 |
| BtrI | CACGTC | 1 cut(s) | 351 |
| BtsCI | GGATG | 3 cut(s) | 313, 397, 814 |
| BtsIMutI | CAGTG | 2 cut(s) | 4, 62 |
| Cfr10I | RCCGGY | 1 cut(s) | 316 |
| Cfr13I | GGNCC | 1 cut(s) | 133 |
| Csp6I | GTAC | 2 cut(s) | 426, 820 |
| CspAI | ACCGGT | 1 cut(s) | 316 |
| CviAII | CATG | 2 cut(s) | 619, 817 |
| CviQI | GTAC | 2 cut(s) | 426, 820 |
| DdeI | CTNAG | 1 cut(s) | 624 |
| DpnI | GATC | 3 cut(s) | 77, 234, 630 |
| DpnII | GATC | 3 cut(s) | 75, 232, 628 |
| EaeI | YGGCCR | 1 cut(s) | 448 |
| Eco130I | CCWWGG | 1 cut(s) | 618 |
| Eco147I | AGGCCT | 1 cut(s) | 554 |
| Eco32I | GATATC | 1 cut(s) | 661 |
| Eco47I | GGWCC | 1 cut(s) | 133 |
| Eco88I | CYCGRG | 2 cut(s) | 161, 294 |
| EcoO109I | RGGNCCY | 1 cut(s) | 133 |
| EcoRI | GAATTC | 1 cut(s) | 458 |
| EcoRII | CCWGG | 3 cut(s) | 135, 275, 681 |
| EcoRV | GATATC | 1 cut(s) | 661 |
| EcoT14I | CCWWGG | 1 cut(s) | 618 |
| ErhI | CCWWGG | 1 cut(s) | 618 |
| FaeI | CATG | 2 cut(s) | 622, 820 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 360, 392 |
| FaqI | GGGAC | 1 cut(s) | 45 |
| FatI | CATG | 2 cut(s) | 618, 816 |
| Fnu4HI | GCNGC | 3 cut(s) | 261, 312, 468 |
| FokI | GGATG | 3 cut(s) | 320, 404, 821 |
| Fsp4HI | GCNGC | 3 cut(s) | 261, 312, 468 |
| FspBI | CTAG | 6 cut(s) | 80, 539, 641, 711, 740, 744 |
| GluI | GCNGC | 3 cut(s) | 261, 312, 468 |
| GsuI | CTGGAG | 3 cut(s) | 158, 223, 777 |
| HaeIII | GGCC | 5 cut(s) | 263, 275, 450, 537, 554 |
| HapII | CCGG | 1 cut(s) | 317 |
| Hin1I | GRCGYC | 1 cut(s) | 328 |
| Hin1II | CATG | 2 cut(s) | 622, 820 |
| HinfI | GANTC | 6 cut(s) | 32, 208, 238, 297, 601, 758 |
| HpaII | CCGG | 1 cut(s) | 317 |
| HphI | GGTGA | 2 cut(s) | 586, 725 |
| Hpy166II | GTNNAC | 2 cut(s) | 301, 783 |
| Hpy188I | TCNGA | 4 cut(s) | 189, 213, 237, 658 |
| Hpy188III | TCNNGA | 5 cut(s) | 161, 202, 294, 773, 794 |
| Hpy8I | GTNNAC | 2 cut(s) | 301, 783 |
| Hpy99I | CGWCG | 1 cut(s) | 330 |
| HpyAV | CCTTC | 5 cut(s) | 73, 117, 118, 413, 779 |
| HpyCH4III | ACNGT | 2 cut(s) | 8, 412 |
| HpyCH4IV | ACGT | 2 cut(s) | 328, 350 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 269, 314, 508 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 163, 266, 605 |
| HpyF3I | CTNAG | 1 cut(s) | 624 |
| HpySE526I | ACGT | 2 cut(s) | 328, 350 |
| Hsp92I | GRCGYC | 1 cut(s) | 328 |
| Hsp92II | CATG | 2 cut(s) | 622, 820 |
| Kzo9I | GATC | 3 cut(s) | 75, 232, 628 |
| LmnI | GCTCC | 6 cut(s) | 23, 40, 91, 322, 649, 796 |
| Lsp1109I | GCAGC | 2 cut(s) | 298, 454 |
| LweI | GCATC | 3 cut(s) | 73, 298, 799 |
| MaeI | CTAG | 6 cut(s) | 80, 539, 641, 711, 740, 744 |
| MaeII | ACGT | 2 cut(s) | 328, 350 |
| MaeIII | GTNAC | 4 cut(s) | 329, 493, 543, 562 |
| MalI | GATC | 3 cut(s) | 77, 234, 630 |
| MboI | GATC | 3 cut(s) | 75, 232, 628 |
| MboII | GAAGA | 2 cut(s) | 358, 380 |
| MflI | RGATCY | 2 cut(s) | 75, 628 |
| MluCI | AATT | 2 cut(s) | 458, 613 |
| MlyI | GAGTC | 2 cut(s) | 232, 306 |
| MseI | TTAA | 2 cut(s) | 378, 440 |
| MslI | CAYNNNNRTG | 1 cut(s) | 306 |
| MspCI | CTTAAG | 1 cut(s) | 377 |
| MspI | CCGG | 1 cut(s) | 317 |
| MspR9I | CCNGG | 3 cut(s) | 137, 277, 683 |
| Mva1269I | GAATGC | 1 cut(s) | 682 |
| MvaI | CCWGG | 3 cut(s) | 137, 277, 683 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 163, 266, 605 |
| NcoI | CCATGG | 1 cut(s) | 618 |
| NdeII | GATC | 3 cut(s) | 75, 232, 628 |
| NlaIII | CATG | 2 cut(s) | 622, 820 |
| NlaIV | GGNNCC | 1 cut(s) | 134 |
| NmuCI | GTSAC | 1 cut(s) | 329 |
| PasI | CCCWGGG | 1 cut(s) | 682 |
| PceI | AGGCCT | 1 cut(s) | 554 |
| PctI | GAATGC | 1 cut(s) | 682 |
| PfeI | GAWTC | 4 cut(s) | 32, 208, 601, 758 |
| PflFI | GACNNNGTC | 1 cut(s) | 131 |
| PfoI | TCCNGGA | 1 cut(s) | 135 |
| PinAI | ACCGGT | 1 cut(s) | 316 |
| PkrI | GCNGC | 3 cut(s) | 262, 313, 469 |
| PleI | GAGTC | 2 cut(s) | 232, 305 |
| PpsI | GAGTC | 2 cut(s) | 232, 305 |
| PpuMI | RGGWCCY | 1 cut(s) | 133 |
| Psp5II | RGGWCCY | 1 cut(s) | 133 |
| Psp6I | CCWGG | 3 cut(s) | 135, 275, 681 |
| PspGI | CCWGG | 3 cut(s) | 135, 275, 681 |
| PspN4I | GGNNCC | 1 cut(s) | 134 |
| PspPI | GGNCC | 1 cut(s) | 133 |
| PspPPI | RGGWCCY | 1 cut(s) | 133 |
| PsuI | RGATCY | 2 cut(s) | 75, 628 |
| PsyI | GACNNNGTC | 1 cut(s) | 131 |
| RsaI | GTAC | 2 cut(s) | 427, 821 |
| RsaNI | GTAC | 2 cut(s) | 426, 820 |
| RseI | CAYNNNNRTG | 1 cut(s) | 306 |
| SaqAI | TTAA | 2 cut(s) | 378, 440 |
| SatI | GCNGC | 3 cut(s) | 261, 312, 468 |
| Sau3AI | GATC | 3 cut(s) | 75, 232, 628 |
| Sau96I | GGNCC | 1 cut(s) | 133 |
| SchI | GAGTC | 2 cut(s) | 232, 306 |
| ScrFI | CCNGG | 3 cut(s) | 137, 277, 683 |
| SfaNI | GCATC | 3 cut(s) | 73, 298, 799 |
| SfcI | CTRYAG | 2 cut(s) | 69, 548 |
| SgrAI | CRCCGGYG | 1 cut(s) | 316 |
| SinI | GGWCC | 1 cut(s) | 133 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 306 |
| SmlI | CTYRAG | 1 cut(s) | 377 |
| SmoI | CTYRAG | 1 cut(s) | 377 |
| Sse9I | AATT | 2 cut(s) | 458, 613 |
| SseBI | AGGCCT | 1 cut(s) | 554 |
| SsiI | CCGC | 4 cut(s) | 260, 423, 572, 736 |
| SspMI | CTAG | 6 cut(s) | 80, 539, 641, 711, 740, 744 |
| StuI | AGGCCT | 1 cut(s) | 554 |
| StyD4I | CCNGG | 3 cut(s) | 135, 275, 681 |
| StyI | CCWWGG | 1 cut(s) | 618 |
| TaaI | ACNGT | 2 cut(s) | 8, 412 |
| TaiI | ACGT | 2 cut(s) | 331, 353 |
| TasI | AATT | 2 cut(s) | 458, 613 |
| TauI | GCSGC | 1 cut(s) | 263 |
| TfiI | GAWTC | 4 cut(s) | 32, 208, 601, 758 |
| Tru1I | TTAA | 2 cut(s) | 378, 440 |
| Tru9I | TTAA | 2 cut(s) | 378, 440 |
| TscAI | CASTG | 1 cut(s) | 62 |
| TseFI | GTSAC | 1 cut(s) | 329 |
| TseI | GCWGC | 2 cut(s) | 311, 467 |
| Tsp45I | GTSAC | 1 cut(s) | 329 |
| TspDTI | ATGAA | 2 cut(s) | 99, 451 |
| TspRI | CASTG | 1 cut(s) | 62 |
| Tth111I | GACNNNGTC | 1 cut(s) | 131 |
| Vha464I | CTTAAG | 1 cut(s) | 377 |
| VpaK11BI | GGWCC | 1 cut(s) | 133 |
| XapI | RAATTY | 1 cut(s) | 458 |
| XspI | CTAG | 6 cut(s) | 80, 539, 641, 711, 740, 744 |
| ZraI | GACGTC | 1 cut(s) | 329 |