Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 46 - 149 | 5.8e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 32, 390 |
| AfaI | GTAC | 1 cut(s) | 363 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 32, 390 |
| AflIII | ACRYGT | 1 cut(s) | 364 |
| AgsI | TTSAA | 4 cut(s) | 14, 49, 154, 302 |
| AjnI | CCWGG | 1 cut(s) | 138 |
| AluBI | AGCT | 3 cut(s) | 53, 149, 425 |
| AluI | AGCT | 3 cut(s) | 53, 149, 425 |
| Alw26I | GTCTC | 1 cut(s) | 323 |
| ApeKI | GCWGC | 2 cut(s) | 353, 422 |
| BbvCI | CCTCAGC | 1 cut(s) | 426 |
| BbvI | GCAGC | 2 cut(s) | 340, 434 |
| BccI | CCATC | 3 cut(s) | 34, 137, 191 |
| BciT130I | CCWGG | 1 cut(s) | 140 |
| BciVI | GTATCC | 1 cut(s) | 449 |
| BcoDI | GTCTC | 1 cut(s) | 323 |
| BfaI | CTAG | 1 cut(s) | 71 |
| BfuI | GTATCC | 1 cut(s) | 449 |
| BisI | GCNGC | 2 cut(s) | 354, 423 |
| BlsI | GCNGC | 2 cut(s) | 355, 424 |
| Bme1390I | CCNGG | 1 cut(s) | 140 |
| BmrFI | CCNGG | 1 cut(s) | 140 |
| Bpu10I | CCTNAGC | 1 cut(s) | 426 |
| BsaAI | YACGTR | 1 cut(s) | 365 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 32, 390 |
| BseBI | CCWGG | 1 cut(s) | 140 |
| BseGI | GGATG | 1 cut(s) | 148 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 32, 390 |
| BseMII | CTCAG | 2 cut(s) | 234, 417 |
| BseXI | GCAGC | 2 cut(s) | 340, 434 |
| BsgI | GTGCAG | 1 cut(s) | 267 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 32, 390 |
| BsmAI | GTCTC | 1 cut(s) | 323 |
| Bsp143I | GATC | 1 cut(s) | 91 |
| BspCNI | CTCAG | 2 cut(s) | 235, 418 |
| BssMI | GATC | 1 cut(s) | 91 |
| Bst2UI | CCWGG | 1 cut(s) | 140 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 350 |
| BstBAI | YACGTR | 1 cut(s) | 365 |
| BstC8I | GCNNGC | 1 cut(s) | 351 |
| BstDEI | CTNAG | 2 cut(s) | 243, 426 |
| BstF5I | GGATG | 1 cut(s) | 148 |
| BstKTI | GATC | 1 cut(s) | 94 |
| BstMAI | GTCTC | 1 cut(s) | 323 |
| BstMBI | GATC | 1 cut(s) | 91 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 248, 350 |
| BstNI | CCWGG | 1 cut(s) | 140 |
| BstSCI | CCNGG | 1 cut(s) | 138 |
| BstV1I | GCAGC | 2 cut(s) | 340, 434 |
| BsuI | GTATCC | 1 cut(s) | 449 |
| BtsCI | GGATG | 1 cut(s) | 148 |
| BtsI | GCAGTG | 1 cut(s) | 344 |
| BtsIMutI | CAGTG | 1 cut(s) | 344 |
| Cac8I | GCNNGC | 1 cut(s) | 351 |
| Csp6I | GTAC | 1 cut(s) | 362 |
| CviAII | CATG | 1 cut(s) | 257 |
| CviJI | RGCY | 6 cut(s) | 41, 53, 149, 218, 266, 425 |
| CviKI_1 | RGCY | 6 cut(s) | 41, 53, 149, 218, 266, 425 |
| CviQI | GTAC | 1 cut(s) | 362 |
| DdeI | CTNAG | 2 cut(s) | 243, 426 |
| DpnI | GATC | 1 cut(s) | 93 |
| DpnII | GATC | 1 cut(s) | 91 |
| EcoRII | CCWGG | 1 cut(s) | 138 |
| FaeI | CATG | 1 cut(s) | 260 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 42, 74 |
| FatI | CATG | 1 cut(s) | 256 |
| FauNDI | CATATG | 1 cut(s) | 238 |
| Fnu4HI | GCNGC | 2 cut(s) | 354, 423 |
| FokI | GGATG | 1 cut(s) | 155 |
| Fsp4HI | GCNGC | 2 cut(s) | 354, 423 |
| FspBI | CTAG | 1 cut(s) | 71 |
| GluI | GCNGC | 2 cut(s) | 354, 423 |
| Hin1II | CATG | 1 cut(s) | 260 |
| HincII | GTYRAC | 1 cut(s) | 136 |
| HindII | GTYRAC | 1 cut(s) | 136 |
| HindIII | AAGCTT | 1 cut(s) | 51 |
| HinfI | GANTC | 3 cut(s) | 245, 295, 415 |
| Hpy166II | GTNNAC | 1 cut(s) | 136 |
| Hpy188III | TCNNGA | 2 cut(s) | 101, 299 |
| Hpy8I | GTNNAC | 1 cut(s) | 136 |
| HpyAV | CCTTC | 1 cut(s) | 284 |
| HpyCH4IV | ACGT | 1 cut(s) | 364 |
| HpyCH4V | TGCA | 3 cut(s) | 284, 411, 422 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 248, 350 |
| HpyF3I | CTNAG | 2 cut(s) | 243, 426 |
| HpySE526I | ACGT | 1 cut(s) | 364 |
| Hsp92II | CATG | 1 cut(s) | 260 |
| Kzo9I | GATC | 1 cut(s) | 91 |
| LmnI | GCTCC | 1 cut(s) | 146 |
| LpnPI | CCDG | 3 cut(s) | 125, 143, 152 |
| Lsp1109I | GCAGC | 2 cut(s) | 340, 434 |
| MaeI | CTAG | 1 cut(s) | 71 |
| MaeII | ACGT | 1 cut(s) | 364 |
| MaeIII | GTNAC | 3 cut(s) | 6, 224, 374 |
| MalI | GATC | 1 cut(s) | 93 |
| MboI | GATC | 1 cut(s) | 91 |
| MluCI | AATT | 2 cut(s) | 122, 316 |
| MlyI | GAGTC | 2 cut(s) | 254, 409 |
| MmeI | TCCRAC | 1 cut(s) | 290 |
| MnlI | CCTC | 5 cut(s) | 164, 256, 299, 316, 421 |
| MseI | TTAA | 2 cut(s) | 129, 165 |
| MslI | CAYNNNNRTG | 1 cut(s) | 289 |
| MspA1I | CMGCKG | 1 cut(s) | 425 |
| MspR9I | CCNGG | 1 cut(s) | 140 |
| MvaI | CCWGG | 1 cut(s) | 140 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 248, 350 |
| NdeI | CATATG | 1 cut(s) | 238 |
| NdeII | GATC | 1 cut(s) | 91 |
| NlaIII | CATG | 1 cut(s) | 260 |
| NmuCI | GTSAC | 2 cut(s) | 224, 374 |
| PfeI | GAWTC | 1 cut(s) | 295 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 32, 390 |
| PkrI | GCNGC | 2 cut(s) | 355, 424 |
| PleI | GAGTC | 2 cut(s) | 253, 409 |
| PpsI | GAGTC | 2 cut(s) | 253, 409 |
| Ppu21I | YACGTR | 1 cut(s) | 365 |
| Psp6I | CCWGG | 1 cut(s) | 138 |
| PspGI | CCWGG | 1 cut(s) | 138 |
| PvuII | CAGCTG | 1 cut(s) | 425 |
| RsaI | GTAC | 1 cut(s) | 363 |
| RsaNI | GTAC | 1 cut(s) | 362 |
| RseI | CAYNNNNRTG | 1 cut(s) | 289 |
| SaqAI | TTAA | 2 cut(s) | 129, 165 |
| SatI | GCNGC | 2 cut(s) | 354, 423 |
| Sau3AI | GATC | 1 cut(s) | 91 |
| SchI | GAGTC | 2 cut(s) | 254, 409 |
| ScrFI | CCNGG | 1 cut(s) | 140 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 289 |
| Sse9I | AATT | 2 cut(s) | 122, 316 |
| SspMI | CTAG | 1 cut(s) | 71 |
| StyD4I | CCNGG | 1 cut(s) | 138 |
| TaiI | ACGT | 1 cut(s) | 367 |
| TaqI | TCGA | 2 cut(s) | 94, 190 |
| TasI | AATT | 2 cut(s) | 122, 316 |
| TfiI | GAWTC | 1 cut(s) | 295 |
| Tru1I | TTAA | 2 cut(s) | 129, 165 |
| Tru9I | TTAA | 2 cut(s) | 129, 165 |
| TscAI | CASTG | 1 cut(s) | 351 |
| TseFI | GTSAC | 2 cut(s) | 224, 374 |
| TseI | GCWGC | 2 cut(s) | 353, 422 |
| Tsp45I | GTSAC | 2 cut(s) | 224, 374 |
| TspDTI | ATGAA | 3 cut(s) | 199, 225, 245 |
| TspRI | CASTG | 1 cut(s) | 351 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 32, 390 |
| XspI | CTAG | 1 cut(s) | 71 |