Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 16 - 137 | 3.2e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 77, 103, 179, 194 |
| AcsI | RAATTY | 1 cut(s) | 110 |
| AcyI | GRCGYC | 1 cut(s) | 34 |
| AfaI | GTAC | 1 cut(s) | 118 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 29, 30 |
| AflIII | ACRYGT | 1 cut(s) | 364 |
| AluBI | AGCT | 1 cut(s) | 209 |
| AluI | AGCT | 1 cut(s) | 209 |
| ApeKI | GCWGC | 1 cut(s) | 271 |
| ApoI | RAATTY | 1 cut(s) | 110 |
| AspS9I | GGNCC | 1 cut(s) | 100 |
| AsuHPI | GGTGA | 1 cut(s) | 398 |
| AvaII | GGWCC | 1 cut(s) | 100 |
| BbvI | GCAGC | 1 cut(s) | 258 |
| BccI | CCATC | 2 cut(s) | 47, 74 |
| BciVI | GTATCC | 1 cut(s) | 209 |
| BfaI | CTAG | 2 cut(s) | 239, 414 |
| BfuI | GTATCC | 1 cut(s) | 209 |
| BisI | GCNGC | 1 cut(s) | 272 |
| BlsI | GCNGC | 1 cut(s) | 273 |
| Bme18I | GGWCC | 1 cut(s) | 100 |
| BmgT120I | GGNCC | 1 cut(s) | 100 |
| BmsI | GCATC | 2 cut(s) | 137, 217 |
| Bsa29I | ATCGAT | 1 cut(s) | 292 |
| BsaHI | GRCGYC | 1 cut(s) | 34 |
| BsaJI | CCNNGG | 1 cut(s) | 132 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 29, 30 |
| Bse3DI | GCAATG | 1 cut(s) | 123 |
| BseCI | ATCGAT | 1 cut(s) | 292 |
| BseDI | CCNNGG | 1 cut(s) | 132 |
| BseGI | GGATG | 3 cut(s) | 85, 128, 232 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 29, 30 |
| BseMI | GCAATG | 1 cut(s) | 123 |
| BseMII | CTCAG | 1 cut(s) | 60 |
| BseXI | GCAGC | 1 cut(s) | 258 |
| BshVI | ATCGAT | 1 cut(s) | 292 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 29, 30 |
| Bsp143I | GATC | 3 cut(s) | 42, 289, 293 |
| Bsp19I | CCATGG | 1 cut(s) | 132 |
| BspACI | CCGC | 4 cut(s) | 77, 103, 179, 194 |
| BspCNI | CTCAG | 1 cut(s) | 61 |
| BspDI | ATCGAT | 1 cut(s) | 292 |
| BsrDI | GCAATG | 1 cut(s) | 123 |
| BssECI | CCNNGG | 1 cut(s) | 132 |
| BssMI | GATC | 3 cut(s) | 42, 289, 293 |
| BssNI | GRCGYC | 1 cut(s) | 34 |
| BssT1I | CCWWGG | 1 cut(s) | 132 |
| BstACI | GRCGYC | 1 cut(s) | 34 |
| BstDEI | CTNAG | 1 cut(s) | 69 |
| BstDSI | CCRYGG | 1 cut(s) | 132 |
| BstF5I | GGATG | 3 cut(s) | 85, 128, 232 |
| BstKTI | GATC | 3 cut(s) | 45, 292, 296 |
| BstMBI | GATC | 3 cut(s) | 42, 289, 293 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 134, 191, 410 |
| BstNSI | RCATGY | 2 cut(s) | 123, 368 |
| BstV1I | GCAGC | 1 cut(s) | 258 |
| Bsu15I | ATCGAT | 1 cut(s) | 292 |
| BsuI | GTATCC | 1 cut(s) | 209 |
| BsuTUI | ATCGAT | 1 cut(s) | 292 |
| BtgI | CCRYGG | 1 cut(s) | 132 |
| BtsCI | GGATG | 3 cut(s) | 85, 128, 232 |
| Cfr13I | GGNCC | 1 cut(s) | 100 |
| ClaI | ATCGAT | 1 cut(s) | 292 |
| CseI | GACGC | 1 cut(s) | 23 |
| Csp6I | GTAC | 1 cut(s) | 117 |
| CviAII | CATG | 4 cut(s) | 120, 133, 152, 365 |
| CviJI | RGCY | 4 cut(s) | 137, 185, 209, 404 |
| CviKI_1 | RGCY | 4 cut(s) | 137, 185, 209, 404 |
| CviQI | GTAC | 1 cut(s) | 117 |
| DdeI | CTNAG | 1 cut(s) | 69 |
| DpnI | GATC | 3 cut(s) | 44, 291, 295 |
| DpnII | GATC | 3 cut(s) | 42, 289, 293 |
| DraI | TTTAAA | 1 cut(s) | 420 |
| EciI | GGCGGA | 1 cut(s) | 92 |
| Eco130I | CCWWGG | 1 cut(s) | 132 |
| Eco47I | GGWCC | 1 cut(s) | 100 |
| EcoT14I | CCWWGG | 1 cut(s) | 132 |
| EcoT22I | ATGCAT | 1 cut(s) | 125 |
| ErhI | CCWWGG | 1 cut(s) | 132 |
| FaeI | CATG | 4 cut(s) | 123, 136, 155, 368 |
| FaiI | YATR | 9 cut(s) | 121, 134, 153, 171, 173, 284, 302, 331, 366 |
| FatI | CATG | 4 cut(s) | 119, 132, 151, 364 |
| FauI | CCCGC | 1 cut(s) | 187 |
| FauNDI | CATATG | 1 cut(s) | 171 |
| Fnu4HI | GCNGC | 1 cut(s) | 272 |
| FokI | GGATG | 3 cut(s) | 92, 115, 239 |
| Fsp4HI | GCNGC | 1 cut(s) | 272 |
| FspBI | CTAG | 2 cut(s) | 239, 414 |
| GluI | GCNGC | 1 cut(s) | 272 |
| HgaI | GACGC | 1 cut(s) | 23 |
| Hin1I | GRCGYC | 1 cut(s) | 34 |
| Hin1II | CATG | 4 cut(s) | 123, 136, 155, 368 |
| HinfI | GANTC | 1 cut(s) | 71 |
| HphI | GGTGA | 1 cut(s) | 398 |
| Hpy188I | TCNGA | 3 cut(s) | 70, 298, 357 |
| Hpy188III | TCNNGA | 3 cut(s) | 215, 314, 428 |
| HpyAV | CCTTC | 1 cut(s) | 212 |
| HpyCH4V | TGCA | 3 cut(s) | 123, 128, 274 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 134, 191, 410 |
| HpyF3I | CTNAG | 1 cut(s) | 69 |
| Hsp92I | GRCGYC | 1 cut(s) | 34 |
| Hsp92II | CATG | 4 cut(s) | 123, 136, 155, 368 |
| Kzo9I | GATC | 3 cut(s) | 42, 289, 293 |
| Lsp1109I | GCAGC | 1 cut(s) | 258 |
| LweI | GCATC | 2 cut(s) | 137, 217 |
| MaeI | CTAG | 2 cut(s) | 239, 414 |
| MalI | GATC | 3 cut(s) | 44, 291, 295 |
| MboI | GATC | 3 cut(s) | 42, 289, 293 |
| MboII | GAAGA | 1 cut(s) | 299 |
| MluCI | AATT | 2 cut(s) | 110, 421 |
| MlyI | GAGTC | 1 cut(s) | 80 |
| MnlI | CCTC | 3 cut(s) | 77, 159, 175 |
| Mph1103I | ATGCAT | 1 cut(s) | 125 |
| MseI | TTAA | 1 cut(s) | 419 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 134, 191, 410 |
| NcoI | CCATGG | 1 cut(s) | 132 |
| NdeI | CATATG | 1 cut(s) | 171 |
| NdeII | GATC | 3 cut(s) | 42, 289, 293 |
| NlaIII | CATG | 4 cut(s) | 123, 136, 155, 368 |
| NsiI | ATGCAT | 1 cut(s) | 125 |
| NspI | RCATGY | 2 cut(s) | 123, 368 |
| PciI | ACATGT | 1 cut(s) | 364 |
| PkrI | GCNGC | 1 cut(s) | 273 |
| PleI | GAGTC | 1 cut(s) | 79 |
| PpsI | GAGTC | 1 cut(s) | 79 |
| PscI | ACATGT | 1 cut(s) | 364 |
| PspPI | GGNCC | 1 cut(s) | 100 |
| RsaI | GTAC | 1 cut(s) | 118 |
| RsaNI | GTAC | 1 cut(s) | 117 |
| SaqAI | TTAA | 1 cut(s) | 419 |
| SatI | GCNGC | 1 cut(s) | 272 |
| Sau3AI | GATC | 3 cut(s) | 42, 289, 293 |
| Sau96I | GGNCC | 1 cut(s) | 100 |
| SchI | GAGTC | 1 cut(s) | 80 |
| SetI | ASST | 6 cut(s) | 68, 88, 211, 223, 240, 411 |
| SfaNI | GCATC | 2 cut(s) | 137, 217 |
| SinI | GGWCC | 1 cut(s) | 100 |
| Sse9I | AATT | 2 cut(s) | 110, 421 |
| SsiI | CCGC | 4 cut(s) | 77, 103, 179, 194 |
| SspI | AATATT | 1 cut(s) | 436 |
| SspMI | CTAG | 2 cut(s) | 239, 414 |
| StyI | CCWWGG | 1 cut(s) | 132 |
| TaqI | TCGA | 3 cut(s) | 234, 292, 315 |
| TasI | AATT | 2 cut(s) | 110, 421 |
| Tru1I | TTAA | 1 cut(s) | 419 |
| Tru9I | TTAA | 1 cut(s) | 419 |
| TseI | GCWGC | 1 cut(s) | 271 |
| TspGWI | ACGGA | 1 cut(s) | 362 |
| VpaK11BI | GGWCC | 1 cut(s) | 100 |
| XapI | RAATTY | 1 cut(s) | 110 |
| XceI | RCATGY | 2 cut(s) | 123, 368 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 169 |
| XspI | CTAG | 2 cut(s) | 239, 414 |
| Zsp2I | ATGCAT | 1 cut(s) | 125 |