Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 313 |
| AciI | CCGC | 1 cut(s) | 667 |
| AcsI | RAATTY | 2 cut(s) | 74, 465 |
| AcuI | CTGAAG | 1 cut(s) | 153 |
| AfaI | GTAC | 2 cut(s) | 478, 639 |
| AflII | CTTAAG | 1 cut(s) | 460 |
| AflIII | ACRYGT | 1 cut(s) | 715 |
| AgeI | ACCGGT | 1 cut(s) | 337 |
| AjnI | CCWGG | 3 cut(s) | 316, 601, 662 |
| AluBI | AGCT | 1 cut(s) | 350 |
| AluI | AGCT | 1 cut(s) | 350 |
| Alw26I | GTCTC | 3 cut(s) | 420, 440, 758 |
| ApeKI | GCWGC | 3 cut(s) | 63, 230, 233 |
| ApoI | RAATTY | 2 cut(s) | 74, 465 |
| AsiGI | ACCGGT | 1 cut(s) | 337 |
| AspS9I | GGNCC | 2 cut(s) | 304, 525 |
| AsuHPI | GGTGA | 3 cut(s) | 370, 530, 617 |
| AsuNHI | GCTAGC | 1 cut(s) | 91 |
| AvaII | GGWCC | 2 cut(s) | 304, 525 |
| BanI | GGYRCC | 1 cut(s) | 313 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 571, 603 |
| BbsI | GAAGAC | 1 cut(s) | 586 |
| BbvI | GCAGC | 3 cut(s) | 75, 217, 220 |
| BccI | CCATC | 5 cut(s) | 143, 505, 515, 697, 746 |
| BceAI | ACGGC | 1 cut(s) | 663 |
| BciT130I | CCWGG | 3 cut(s) | 318, 603, 664 |
| BcoDI | GTCTC | 3 cut(s) | 420, 440, 758 |
| BfaI | CTAG | 3 cut(s) | 92, 480, 576 |
| BfmI | CTRYAG | 1 cut(s) | 438 |
| BfrI | CTTAAG | 1 cut(s) | 460 |
| BisI | GCNGC | 3 cut(s) | 64, 231, 234 |
| BlsI | GCNGC | 3 cut(s) | 65, 232, 235 |
| BmcAI | AGTACT | 1 cut(s) | 478 |
| Bme1390I | CCNGG | 3 cut(s) | 318, 603, 664 |
| Bme18I | GGWCC | 2 cut(s) | 304, 525 |
| BmgT120I | GGNCC | 2 cut(s) | 304, 525 |
| BmiI | GGNNCC | 3 cut(s) | 306, 315, 526 |
| BmrFI | CCNGG | 3 cut(s) | 318, 603, 664 |
| BmsI | GCATC | 2 cut(s) | 78, 709 |
| BmtI | GCTAGC | 1 cut(s) | 95 |
| BpiI | GAAGAC | 1 cut(s) | 586 |
| BpmI | CTGGAG | 1 cut(s) | 44 |
| BsaBI | GATNNNNATC | 1 cut(s) | 33 |
| BsaJI | CCNNGG | 2 cut(s) | 308, 317 |
| BsaWI | WCCGGW | 1 cut(s) | 337 |
| Bse118I | RCCGGY | 1 cut(s) | 337 |
| Bse1I | ACTGG | 2 cut(s) | 269, 410 |
| Bse8I | GATNNNNATC | 1 cut(s) | 33 |
| BseBI | CCWGG | 3 cut(s) | 318, 603, 664 |
| BseDI | CCNNGG | 2 cut(s) | 308, 317 |
| BseGI | GGATG | 3 cut(s) | 490, 516, 874 |
| BseJI | GATNNNNATC | 1 cut(s) | 33 |
| BseMII | CTCAG | 1 cut(s) | 441 |
| BseNI | ACTGG | 2 cut(s) | 269, 410 |
| BseRI | GAGGAG | 1 cut(s) | 235 |
| BseXI | GCAGC | 3 cut(s) | 75, 217, 220 |
| BshNI | GGYRCC | 1 cut(s) | 313 |
| BshTI | ACCGGT | 1 cut(s) | 337 |
| BsiSI | CCGG | 1 cut(s) | 338 |
| BslFI | GGGAC | 2 cut(s) | 538, 715 |
| BsmAI | GTCTC | 3 cut(s) | 420, 440, 758 |
| BsmFI | GGGAC | 2 cut(s) | 538, 715 |
| BspACI | CCGC | 1 cut(s) | 667 |
| BspCNI | CTCAG | 1 cut(s) | 442 |
| BspLI | GGNNCC | 3 cut(s) | 306, 315, 526 |
| BspOI | GCTAGC | 1 cut(s) | 95 |
| BspT107I | GGYRCC | 1 cut(s) | 313 |
| BspTI | CTTAAG | 1 cut(s) | 460 |
| BsrFI | RCCGGY | 1 cut(s) | 337 |
| BsrI | ACTGG | 2 cut(s) | 269, 410 |
| BssAI | RCCGGY | 1 cut(s) | 337 |
| BssECI | CCNNGG | 2 cut(s) | 308, 317 |
| Bst2UI | CCWGG | 3 cut(s) | 318, 603, 664 |
| Bst4CI | ACNGT | 1 cut(s) | 863 |
| Bst6I | CTCTTC | 2 cut(s) | 438, 777 |
| BstAFI | CTTAAG | 1 cut(s) | 460 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 811 |
| BstC8I | GCNNGC | 2 cut(s) | 93, 102 |
| BstDEI | CTNAG | 3 cut(s) | 450, 651, 801 |
| BstDSI | CCRYGG | 1 cut(s) | 308 |
| BstF5I | GGATG | 3 cut(s) | 490, 516, 874 |
| BstMAI | GTCTC | 3 cut(s) | 420, 440, 758 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 92, 97, 101, 664, 811 |
| BstNI | CCWGG | 3 cut(s) | 318, 603, 664 |
| BstNSI | RCATGY | 1 cut(s) | 719 |
| BstSCI | CCNGG | 3 cut(s) | 316, 601, 662 |
| BstSFI | CTRYAG | 1 cut(s) | 438 |
| BstV1I | GCAGC | 3 cut(s) | 75, 217, 220 |
| BstV2I | GAAGAC | 1 cut(s) | 586 |
| BtgI | CCRYGG | 1 cut(s) | 308 |
| BtgZI | GCGATG | 1 cut(s) | 101 |
| BtsCI | GGATG | 3 cut(s) | 490, 516, 874 |
| Cac8I | GCNNGC | 2 cut(s) | 93, 102 |
| Cfr10I | RCCGGY | 1 cut(s) | 337 |
| Cfr13I | GGNCC | 2 cut(s) | 304, 525 |
| Csp6I | GTAC | 2 cut(s) | 477, 638 |
| CspAI | ACCGGT | 1 cut(s) | 337 |
| CviAII | CATG | 4 cut(s) | 197, 216, 297, 716 |
| CviQI | GTAC | 2 cut(s) | 477, 638 |
| DdeI | CTNAG | 3 cut(s) | 450, 651, 801 |
| Eam1104I | CTCTTC | 2 cut(s) | 438, 777 |
| EarI | CTCTTC | 2 cut(s) | 438, 777 |
| Eco47I | GGWCC | 2 cut(s) | 304, 525 |
| Eco57I | CTGAAG | 1 cut(s) | 153 |
| EcoO109I | RGGNCCY | 1 cut(s) | 525 |
| EcoRI | GAATTC | 1 cut(s) | 465 |
| EcoRII | CCWGG | 3 cut(s) | 316, 601, 662 |
| FaeI | CATG | 4 cut(s) | 200, 219, 300, 719 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 454, 486 |
| FaqI | GGGAC | 2 cut(s) | 538, 715 |
| FatI | CATG | 4 cut(s) | 196, 215, 296, 715 |
| FauI | CCCGC | 1 cut(s) | 660 |
| Fnu4HI | GCNGC | 3 cut(s) | 64, 231, 234 |
| FokI | GGATG | 2 cut(s) | 497, 523 |
| Fsp4HI | GCNGC | 3 cut(s) | 64, 231, 234 |
| FspBI | CTAG | 3 cut(s) | 92, 480, 576 |
| GluI | GCNGC | 3 cut(s) | 64, 231, 234 |
| GsuI | CTGGAG | 1 cut(s) | 44 |
| HapII | CCGG | 1 cut(s) | 338 |
| Hin1II | CATG | 4 cut(s) | 200, 219, 300, 719 |
| HinfI | GANTC | 3 cut(s) | 322, 728, 832 |
| HpaII | CCGG | 1 cut(s) | 338 |
| HphI | GGTGA | 3 cut(s) | 370, 530, 617 |
| Hpy166II | GTNNAC | 1 cut(s) | 798 |
| Hpy188I | TCNGA | 1 cut(s) | 121 |
| Hpy188III | TCNNGA | 5 cut(s) | 23, 38, 141, 538, 576 |
| Hpy8I | GTNNAC | 1 cut(s) | 798 |
| HpyAV | CCTTC | 6 cut(s) | 38, 177, 216, 509, 538, 622 |
| HpyCH4III | ACNGT | 1 cut(s) | 863 |
| HpyCH4V | TGCA | 8 cut(s) | 236, 286, 296, 545, 565, 658, 814, 853 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 92, 97, 101, 664, 811 |
| HpyF3I | CTNAG | 3 cut(s) | 450, 651, 801 |
| Hsp92II | CATG | 4 cut(s) | 200, 219, 300, 719 |
| LmnI | GCTCC | 2 cut(s) | 355, 697 |
| Lsp1109I | GCAGC | 3 cut(s) | 75, 217, 220 |
| LweI | GCATC | 2 cut(s) | 78, 709 |
| MaeI | CTAG | 3 cut(s) | 92, 480, 576 |
| MaeIII | GTNAC | 3 cut(s) | 380, 605, 674 |
| MboII | GAAGA | 9 cut(s) | 53, 455, 561, 564, 591, 628, 631, 677, 764 |
| MluCI | AATT | 8 cut(s) | 74, 79, 144, 246, 328, 420, 465, 787 |
| MlyI | GAGTC | 2 cut(s) | 737, 841 |
| MnlI | CCTC | 7 cut(s) | 19, 135, 213, 406, 445, 484, 501 |
| MseI | TTAA | 7 cut(s) | 78, 245, 386, 419, 461, 473, 779 |
| MspCI | CTTAAG | 1 cut(s) | 460 |
| MspI | CCGG | 1 cut(s) | 338 |
| MspR9I | CCNGG | 3 cut(s) | 318, 603, 664 |
| MvaI | CCWGG | 3 cut(s) | 318, 603, 664 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 92, 97, 101, 664, 811 |
| NheI | GCTAGC | 1 cut(s) | 91 |
| NlaIII | CATG | 4 cut(s) | 200, 219, 300, 719 |
| NlaIV | GGNNCC | 3 cut(s) | 306, 315, 526 |
| NmuCI | GTSAC | 2 cut(s) | 380, 605 |
| NspI | RCATGY | 1 cut(s) | 719 |
| PciI | ACATGT | 1 cut(s) | 715 |
| PfeI | GAWTC | 1 cut(s) | 322 |
| PinAI | ACCGGT | 1 cut(s) | 337 |
| PkrI | GCNGC | 3 cut(s) | 65, 232, 235 |
| PleI | GAGTC | 2 cut(s) | 736, 840 |
| PpsI | GAGTC | 2 cut(s) | 736, 840 |
| PpuMI | RGGWCCY | 1 cut(s) | 525 |
| PscI | ACATGT | 1 cut(s) | 715 |
| Psp5II | RGGWCCY | 1 cut(s) | 525 |
| Psp6I | CCWGG | 3 cut(s) | 316, 601, 662 |
| PspGI | CCWGG | 3 cut(s) | 316, 601, 662 |
| PspN4I | GGNNCC | 3 cut(s) | 306, 315, 526 |
| PspPI | GGNCC | 2 cut(s) | 304, 525 |
| PspPPI | RGGWCCY | 1 cut(s) | 525 |
| RsaI | GTAC | 2 cut(s) | 478, 639 |
| RsaNI | GTAC | 2 cut(s) | 477, 638 |
| SaqAI | TTAA | 7 cut(s) | 78, 245, 386, 419, 461, 473, 779 |
| SatI | GCNGC | 3 cut(s) | 64, 231, 234 |
| Sau96I | GGNCC | 2 cut(s) | 304, 525 |
| ScaI | AGTACT | 1 cut(s) | 478 |
| SchI | GAGTC | 2 cut(s) | 737, 841 |
| ScrFI | CCNGG | 3 cut(s) | 318, 603, 664 |
| SetI | ASST | 8 cut(s) | 49, 352, 378, 520, 530, 586, 643, 665 |
| SfaNI | GCATC | 2 cut(s) | 78, 709 |
| SfcI | CTRYAG | 1 cut(s) | 438 |
| SinI | GGWCC | 2 cut(s) | 304, 525 |
| SmlI | CTYRAG | 1 cut(s) | 460 |
| SmoI | CTYRAG | 1 cut(s) | 460 |
| Sse9I | AATT | 8 cut(s) | 74, 79, 144, 246, 328, 420, 465, 787 |
| SsiI | CCGC | 1 cut(s) | 667 |
| SspI | AATATT | 1 cut(s) | 161 |
| SspMI | CTAG | 3 cut(s) | 92, 480, 576 |
| StyD4I | CCNGG | 3 cut(s) | 316, 601, 662 |
| TaaI | ACNGT | 1 cut(s) | 863 |
| TaqI | TCGA | 2 cut(s) | 142, 550 |
| TasI | AATT | 8 cut(s) | 74, 79, 144, 246, 328, 420, 465, 787 |
| TatI | WGTACW | 1 cut(s) | 476 |
| TfiI | GAWTC | 1 cut(s) | 322 |
| Tru1I | TTAA | 7 cut(s) | 78, 245, 386, 419, 461, 473, 779 |
| Tru9I | TTAA | 7 cut(s) | 78, 245, 386, 419, 461, 473, 779 |
| TseFI | GTSAC | 2 cut(s) | 380, 605 |
| TseI | GCWGC | 3 cut(s) | 63, 230, 233 |
| Tsp45I | GTSAC | 2 cut(s) | 380, 605 |
| TspDTI | ATGAA | 2 cut(s) | 204, 764 |
| Vha464I | CTTAAG | 1 cut(s) | 460 |
| VpaK11BI | GGWCC | 2 cut(s) | 304, 525 |
| XapI | RAATTY | 2 cut(s) | 74, 465 |
| XbaI | TCTAGA | 1 cut(s) | 575 |
| XceI | RCATGY | 1 cut(s) | 719 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 19 |
| XspI | CTAG | 3 cut(s) | 92, 480, 576 |
| ZrmI | AGTACT | 1 cut(s) | 478 |