Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 2 - 168 | 9.3e-23 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 238 - 275 | 2.2e-07 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 259 - 451 | 4.1e-19 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 280 - 448 | 5e-09 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1076 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 911 |
| AccI | GTMKAC | 1 cut(s) | 435 |
| AciI | CCGC | 1 cut(s) | 95 |
| AclWI | GGATC | 5 cut(s) | 879, 896, 909, 1116, 1129 |
| AcsI | RAATTY | 4 cut(s) | 827, 1232, 1240, 1284 |
| AcuI | CTGAAG | 1 cut(s) | 1641 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 806, 911 |
| AflII | CTTAAG | 1 cut(s) | 859 |
| AgsI | TTSAA | 8 cut(s) | 232, 487, 496, 526, 815, 1704, 1722, 1823 |
| AhlI | ACTAGT | 1 cut(s) | 1895 |
| AjnI | CCWGG | 3 cut(s) | 1422, 1691, 1882 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1507, 1539, 1583, 1615, 1702, 1734 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1494, 1526 |
| AluBI | AGCT | 6 cut(s) | 10, 344, 572, 785, 1294, 1860 |
| AluI | AGCT | 6 cut(s) | 10, 344, 572, 785, 1294, 1860 |
| Alw26I | GTCTC | 3 cut(s) | 188, 1084, 1886 |
| AlwI | GGATC | 5 cut(s) | 879, 896, 909, 1116, 1129 |
| Ama87I | CYCGRG | 1 cut(s) | 345 |
| AoxI | GGCC | 3 cut(s) | 180, 559, 1688 |
| ApeKI | GCWGC | 6 cut(s) | 372, 461, 464, 978, 1801, 1912 |
| ApoI | RAATTY | 4 cut(s) | 827, 1232, 1240, 1284 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 491 |
| AspLEI | GCGC | 1 cut(s) | 1837 |
| AspS9I | GGNCC | 3 cut(s) | 181, 1689, 1695 |
| AsuC2I | CCSGG | 3 cut(s) | 800, 1280, 1500 |
| AsuHPI | GGTGA | 3 cut(s) | 247, 814, 1676 |
| AsuII | TTCGAA | 2 cut(s) | 123, 1111 |
| AvaI | CYCGRG | 1 cut(s) | 345 |
| AvaII | GGWCC | 1 cut(s) | 1695 |
| BamHI | GGATCC | 2 cut(s) | 901, 1121 |
| BanII | GRGCYC | 1 cut(s) | 590 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1201, 1233 |
| BbvI | GCAGC | 6 cut(s) | 384, 448, 451, 990, 1813, 1899 |
| BccI | CCATC | 4 cut(s) | 360, 844, 913, 1429 |
| BciT130I | CCWGG | 3 cut(s) | 1424, 1693, 1884 |
| BcnI | CCSGG | 3 cut(s) | 800, 1280, 1500 |
| BcoDI | GTCTC | 3 cut(s) | 188, 1084, 1886 |
| BcuI | ACTAGT | 1 cut(s) | 1895 |
| BfaI | CTAG | 3 cut(s) | 779, 1307, 1896 |
| BfrI | CTTAAG | 1 cut(s) | 859 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1425 |
| BglII | AGATCT | 1 cut(s) | 208 |
| BisI | GCNGC | 6 cut(s) | 373, 462, 465, 979, 1802, 1913 |
| BlsI | GCNGC | 6 cut(s) | 374, 463, 466, 980, 1803, 1914 |
| Bme1390I | CCNGG | 6 cut(s) | 800, 1280, 1424, 1500, 1693, 1884 |
| Bme18I | GGWCC | 1 cut(s) | 1695 |
| BmeT110I | CYCGRG | 1 cut(s) | 345 |
| BmgT120I | GGNCC | 3 cut(s) | 181, 1689, 1695 |
| BmiI | GGNNCC | 3 cut(s) | 903, 1123, 1512 |
| BmrFI | CCNGG | 6 cut(s) | 800, 1280, 1424, 1500, 1693, 1884 |
| BmsI | GCATC | 3 cut(s) | 448, 682, 1013 |
| BpmI | CTGGAG | 1 cut(s) | 1361 |
| Bpu10I | CCTNAGC | 1 cut(s) | 90 |
| Bpu14I | TTCGAA | 2 cut(s) | 123, 1111 |
| BpuEI | CTTGAG | 2 cut(s) | 1274, 1450 |
| BpuMI | CCSGG | 3 cut(s) | 800, 1280, 1500 |
| BsaBI | GATNNNNATC | 1 cut(s) | 157 |
| BsaJI | CCNNGG | 3 cut(s) | 556, 1423, 1691 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 246, 276 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 806, 911 |
| Bse1I | ACTGG | 5 cut(s) | 67, 702, 1125, 1344, 1523 |
| Bse3DI | GCAATG | 1 cut(s) | 1894 |
| Bse8I | GATNNNNATC | 1 cut(s) | 157 |
| BseBI | CCWGG | 3 cut(s) | 1424, 1693, 1884 |
| BseDI | CCNNGG | 3 cut(s) | 556, 1423, 1691 |
| BseGI | GGATG | 4 cut(s) | 371, 453, 1028, 1440 |
| BseJI | GATNNNNATC | 1 cut(s) | 157 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 806, 911 |
| BseMI | GCAATG | 1 cut(s) | 1894 |
| BseMII | CTCAG | 2 cut(s) | 1030, 1313 |
| BseNI | ACTGG | 5 cut(s) | 67, 702, 1125, 1344, 1523 |
| BseXI | GCAGC | 6 cut(s) | 384, 448, 451, 990, 1813, 1899 |
| BseYI | CCCAGC | 1 cut(s) | 1164 |
| BsgI | GTGCAG | 1 cut(s) | 1763 |
| BshFI | GGCC | 3 cut(s) | 182, 561, 1690 |
| BsiHKCI | CYCGRG | 1 cut(s) | 345 |
| BsiSI | CCGG | 3 cut(s) | 800, 1279, 1500 |
| BslFI | GGGAC | 2 cut(s) | 73, 1462 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 806, 911 |
| BsmAI | GTCTC | 3 cut(s) | 188, 1084, 1886 |
| BsmFI | GGGAC | 2 cut(s) | 73, 1462 |
| BsmI | GAATGC | 3 cut(s) | 491, 493, 1818 |
| BsnI | GGCC | 3 cut(s) | 182, 561, 1690 |
| BsoBI | CYCGRG | 1 cut(s) | 345 |
| Bsp119I | TTCGAA | 2 cut(s) | 123, 1111 |
| Bsp1286I | GDGCHC | 1 cut(s) | 590 |
| BspACI | CCGC | 1 cut(s) | 95 |
| BspANI | GGCC | 3 cut(s) | 182, 561, 1690 |
| BspCNI | CTCAG | 2 cut(s) | 1029, 1314 |
| BspLI | GGNNCC | 3 cut(s) | 903, 1123, 1512 |
| BspPI | GGATC | 5 cut(s) | 879, 896, 909, 1116, 1129 |
| BspT104I | TTCGAA | 2 cut(s) | 123, 1111 |
| BspTI | CTTAAG | 1 cut(s) | 859 |
| BsrDI | GCAATG | 1 cut(s) | 1894 |
| BsrI | ACTGG | 5 cut(s) | 67, 702, 1125, 1344, 1523 |
| BssECI | CCNNGG | 3 cut(s) | 556, 1423, 1691 |
| BssNAI | GTATAC | 1 cut(s) | 436 |
| BssT1I | CCWWGG | 1 cut(s) | 556 |
| Bst1107I | GTATAC | 1 cut(s) | 436 |
| Bst2UI | CCWGG | 3 cut(s) | 1424, 1693, 1884 |
| Bst4CI | ACNGT | 4 cut(s) | 638, 757, 1557, 1852 |
| Bst6I | CTCTTC | 1 cut(s) | 204 |
| BstAFI | CTTAAG | 1 cut(s) | 859 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 539 |
| BstBI | TTCGAA | 2 cut(s) | 123, 1111 |
| BstC8I | GCNNGC | 1 cut(s) | 279 |
| BstDEI | CTNAG | 8 cut(s) | 90, 215, 340, 677, 962, 1016, 1322, 1873 |
| BstF5I | GGATG | 4 cut(s) | 371, 453, 1028, 1440 |
| BstHHI | GCGC | 1 cut(s) | 1837 |
| BstMAI | GTCTC | 3 cut(s) | 188, 1084, 1886 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 539, 1425, 1610, 1680, 1909 |
| BstNI | CCWGG | 3 cut(s) | 1424, 1693, 1884 |
| BstSCI | CCNGG | 6 cut(s) | 798, 1278, 1422, 1498, 1691, 1882 |
| BstV1I | GCAGC | 6 cut(s) | 384, 448, 451, 990, 1813, 1899 |
| BstX2I | RGATCY | 4 cut(s) | 208, 871, 901, 1121 |
| BstYI | RGATCY | 4 cut(s) | 208, 871, 901, 1121 |
| BstZ17I | GTATAC | 1 cut(s) | 436 |
| BsuRI | GGCC | 3 cut(s) | 182, 561, 1690 |
| BtsCI | GGATG | 4 cut(s) | 371, 453, 1028, 1440 |
| BtsI | GCAGTG | 2 cut(s) | 623, 889 |
| BtsIMutI | CAGTG | 6 cut(s) | 623, 695, 889, 1024, 1337, 1857 |
| Cac8I | GCNNGC | 1 cut(s) | 279 |
| CfoI | GCGC | 1 cut(s) | 1837 |
| Cfr13I | GGNCC | 3 cut(s) | 181, 1689, 1695 |
| CviAII | CATG | 6 cut(s) | 43, 764, 975, 1221, 1733, 1908 |
| DdeI | CTNAG | 8 cut(s) | 90, 215, 340, 677, 962, 1016, 1322, 1873 |
| DraI | TTTAAA | 1 cut(s) | 15 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1076 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1076 |
| Eam1104I | CTCTTC | 1 cut(s) | 204 |
| EarI | CTCTTC | 1 cut(s) | 204 |
| Eco130I | CCWWGG | 1 cut(s) | 556 |
| Eco147I | AGGCCT | 1 cut(s) | 561 |
| Eco24I | GRGCYC | 1 cut(s) | 590 |
| Eco32I | GATATC | 1 cut(s) | 771 |
| Eco47I | GGWCC | 1 cut(s) | 1695 |
| Eco57I | CTGAAG | 1 cut(s) | 1641 |
| Eco88I | CYCGRG | 1 cut(s) | 345 |
| EcoRII | CCWGG | 3 cut(s) | 1422, 1691, 1882 |
| EcoRV | GATATC | 1 cut(s) | 771 |
| EcoT14I | CCWWGG | 1 cut(s) | 556 |
| EcoT22I | ATGCAT | 2 cut(s) | 493, 1226 |
| EcoT38I | GRGCYC | 1 cut(s) | 590 |
| ErhI | CCWWGG | 1 cut(s) | 556 |
| FaeI | CATG | 6 cut(s) | 46, 767, 978, 1224, 1736, 1911 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 183, 215, 660, 692 |
| FaqI | GGGAC | 2 cut(s) | 73, 1462 |
| FatI | CATG | 6 cut(s) | 42, 763, 974, 1220, 1732, 1907 |
| FblI | GTMKAC | 1 cut(s) | 435 |
| Fnu4HI | GCNGC | 6 cut(s) | 373, 462, 465, 979, 1802, 1913 |
| FokI | GGATG | 4 cut(s) | 378, 460, 1035, 1447 |
| FriOI | GRGCYC | 1 cut(s) | 590 |
| Fsp4HI | GCNGC | 6 cut(s) | 373, 462, 465, 979, 1802, 1913 |
| FspBI | CTAG | 3 cut(s) | 779, 1307, 1896 |
| GlaI | GCGC | 1 cut(s) | 1836 |
| GluI | GCNGC | 6 cut(s) | 373, 462, 465, 979, 1802, 1913 |
| GsaI | CCCAGC | 1 cut(s) | 1168 |
| GsuI | CTGGAG | 1 cut(s) | 1361 |
| HaeIII | GGCC | 3 cut(s) | 182, 561, 1690 |
| HapII | CCGG | 3 cut(s) | 800, 1279, 1500 |
| HhaI | GCGC | 1 cut(s) | 1837 |
| Hin1II | CATG | 6 cut(s) | 46, 767, 978, 1224, 1736, 1911 |
| Hin6I | GCGC | 1 cut(s) | 1835 |
| HinP1I | GCGC | 1 cut(s) | 1835 |
| HindIII | AAGCTT | 2 cut(s) | 8, 783 |
| HinfI | GANTC | 5 cut(s) | 196, 301, 350, 967, 1566 |
| HpaII | CCGG | 3 cut(s) | 800, 1279, 1500 |
| HphI | GGTGA | 3 cut(s) | 247, 814, 1676 |
| Hpy166II | GTNNAC | 3 cut(s) | 436, 760, 1870 |
| Hpy188I | TCNGA | 4 cut(s) | 152, 1581, 1621, 1729 |
| Hpy8I | GTNNAC | 3 cut(s) | 436, 760, 1870 |
| HpyAV | CCTTC | 8 cut(s) | 167, 226, 267, 572, 1227, 1392, 1619, 1765 |
| HpyCH4III | ACNGT | 4 cut(s) | 638, 757, 1557, 1852 |
| HpyCH4IV | ACGT | 1 cut(s) | 1450 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 539, 1425, 1610, 1680, 1909 |
| HpyF3I | CTNAG | 8 cut(s) | 90, 215, 340, 677, 962, 1016, 1322, 1873 |
| HpySE526I | ACGT | 1 cut(s) | 1450 |
| Hsp92II | CATG | 6 cut(s) | 46, 767, 978, 1224, 1736, 1911 |
| HspAI | GCGC | 1 cut(s) | 1835 |
| Lsp1109I | GCAGC | 6 cut(s) | 384, 448, 451, 990, 1813, 1899 |
| LweI | GCATC | 3 cut(s) | 448, 682, 1013 |
| MaeI | CTAG | 3 cut(s) | 779, 1307, 1896 |
| MaeII | ACGT | 1 cut(s) | 1450 |
| MaeIII | GTNAC | 2 cut(s) | 1272, 1876 |
| MboII | GAAGA | 6 cut(s) | 191, 203, 673, 713, 1205, 1634 |
| MfeI | CAATTG | 3 cut(s) | 84, 185, 909 |
| MflI | RGATCY | 4 cut(s) | 208, 871, 901, 1121 |
| MhlI | GDGCHC | 1 cut(s) | 590 |
| MlyI | GAGTC | 3 cut(s) | 190, 359, 961 |
| MmeI | TCCRAC | 2 cut(s) | 1239, 1350 |
| Mph1103I | ATGCAT | 2 cut(s) | 493, 1226 |
| MroXI | GAANNNNTTC | 1 cut(s) | 491 |
| MspCI | CTTAAG | 1 cut(s) | 859 |
| MspI | CCGG | 3 cut(s) | 800, 1279, 1500 |
| MspR9I | CCNGG | 6 cut(s) | 800, 1280, 1424, 1500, 1693, 1884 |
| MunI | CAATTG | 3 cut(s) | 84, 185, 909 |
| Mva1269I | GAATGC | 3 cut(s) | 491, 493, 1818 |
| MvaI | CCWGG | 3 cut(s) | 1424, 1693, 1884 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 539, 1425, 1610, 1680, 1909 |
| NciI | CCSGG | 3 cut(s) | 800, 1280, 1500 |
| NlaIII | CATG | 6 cut(s) | 46, 767, 978, 1224, 1736, 1911 |
| NlaIV | GGNNCC | 3 cut(s) | 903, 1123, 1512 |
| NmuCI | GTSAC | 2 cut(s) | 1272, 1876 |
| NsiI | ATGCAT | 2 cut(s) | 493, 1226 |
| NspV | TTCGAA | 2 cut(s) | 123, 1111 |
| PaeR7I | CTCGAG | 1 cut(s) | 345 |
| PceI | AGGCCT | 1 cut(s) | 561 |
| PctI | GAATGC | 3 cut(s) | 491, 493, 1818 |
| PdmI | GAANNNNTTC | 1 cut(s) | 491 |
| PfeI | GAWTC | 2 cut(s) | 301, 1566 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 911 |
| PfoI | TCCNGGA | 2 cut(s) | 1278, 1498 |
| PkrI | GCNGC | 6 cut(s) | 374, 463, 466, 980, 1803, 1914 |
| PleI | GAGTC | 3 cut(s) | 190, 358, 961 |
| PpsI | GAGTC | 3 cut(s) | 190, 358, 961 |
| Psp6I | CCWGG | 3 cut(s) | 1422, 1691, 1882 |
| PspFI | CCCAGC | 1 cut(s) | 1164 |
| PspGI | CCWGG | 3 cut(s) | 1422, 1691, 1882 |
| PspN4I | GGNNCC | 3 cut(s) | 903, 1123, 1512 |
| PspPI | GGNCC | 3 cut(s) | 181, 1689, 1695 |
| PsuI | RGATCY | 4 cut(s) | 208, 871, 901, 1121 |
| SatI | GCNGC | 6 cut(s) | 373, 462, 465, 979, 1802, 1913 |
| Sau96I | GGNCC | 3 cut(s) | 181, 1689, 1695 |
| SchI | GAGTC | 3 cut(s) | 190, 359, 961 |
| ScrFI | CCNGG | 6 cut(s) | 800, 1280, 1424, 1500, 1693, 1884 |
| SduI | GDGCHC | 1 cut(s) | 590 |
| SfaNI | GCATC | 3 cut(s) | 448, 682, 1013 |
| Sfr274I | CTCGAG | 1 cut(s) | 345 |
| SfuI | TTCGAA | 2 cut(s) | 123, 1111 |
| SinI | GGWCC | 1 cut(s) | 1695 |
| SlaI | CTCGAG | 1 cut(s) | 345 |
| SmlI | CTYRAG | 4 cut(s) | 345, 859, 1253, 1429 |
| SmoI | CTYRAG | 4 cut(s) | 345, 859, 1253, 1429 |
| SpeI | ACTAGT | 1 cut(s) | 1895 |
| SseBI | AGGCCT | 1 cut(s) | 561 |
| SsiI | CCGC | 1 cut(s) | 95 |
| SspI | AATATT | 2 cut(s) | 34, 546 |
| SspMI | CTAG | 3 cut(s) | 779, 1307, 1896 |
| StuI | AGGCCT | 1 cut(s) | 561 |
| StyD4I | CCNGG | 6 cut(s) | 798, 1278, 1422, 1498, 1691, 1882 |
| StyI | CCWWGG | 1 cut(s) | 556 |
| TaaI | ACNGT | 4 cut(s) | 638, 757, 1557, 1852 |
| TaiI | ACGT | 1 cut(s) | 1453 |
| TaqI | TCGA | 5 cut(s) | 21, 123, 346, 1111, 1533 |
| TfiI | GAWTC | 2 cut(s) | 301, 1566 |
| TscAI | CASTG | 6 cut(s) | 623, 702, 889, 1024, 1344, 1857 |
| TseFI | GTSAC | 2 cut(s) | 1272, 1876 |
| TseI | GCWGC | 6 cut(s) | 372, 461, 464, 978, 1801, 1912 |
| Tsp45I | GTSAC | 2 cut(s) | 1272, 1876 |
| TspDTI | ATGAA | 6 cut(s) | 1209, 1460, 1648, 1784, 1796, 1896 |
| TspRI | CASTG | 6 cut(s) | 623, 702, 889, 1024, 1344, 1857 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 911 |
| Vha464I | CTTAAG | 1 cut(s) | 859 |
| VpaK11BI | GGWCC | 1 cut(s) | 1695 |
| XapI | RAATTY | 4 cut(s) | 827, 1232, 1240, 1284 |
| XhoI | CTCGAG | 1 cut(s) | 345 |
| XmiI | GTMKAC | 1 cut(s) | 435 |
| XmnI | GAANNNNTTC | 1 cut(s) | 491 |
| XspI | CTAG | 3 cut(s) | 779, 1307, 1896 |
| Zsp2I | ATGCAT | 2 cut(s) | 493, 1226 |