zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 8 - 261 | 1.4e-07 | Endonuclease/Exonuclease/phosphatase family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 874 |
| Acc36I | ACCTGC | 1 cut(s) | 874 |
| AclWI | GGATC | 3 cut(s) | 38, 702, 717 |
| AcsI | RAATTY | 1 cut(s) | 653 |
| AcuI | CTGAAG | 2 cut(s) | 213, 240 |
| AfaI | GTAC | 1 cut(s) | 133 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 588, 691, 706 |
| AgsI | TTSAA | 6 cut(s) | 31, 170, 281, 487, 653, 661 |
| AhlI | ACTAGT | 1 cut(s) | 107 |
| AjnI | CCWGG | 2 cut(s) | 181, 319 |
| AluBI | AGCT | 3 cut(s) | 146, 459, 647 |
| AluI | AGCT | 3 cut(s) | 146, 459, 647 |
| Alw21I | GWGCWC | 3 cut(s) | 343, 406, 649 |
| Alw44I | GTGCAC | 1 cut(s) | 402 |
| AlwI | GGATC | 3 cut(s) | 38, 702, 717 |
| AoxI | GGCC | 1 cut(s) | 572 |
| ApaLI | GTGCAC | 1 cut(s) | 402 |
| ApeKI | GCWGC | 1 cut(s) | 433 |
| ApoI | RAATTY | 1 cut(s) | 653 |
| AspS9I | GGNCC | 1 cut(s) | 215 |
| AsuHPI | GGTGA | 3 cut(s) | 300, 566, 784 |
| AvaII | GGWCC | 1 cut(s) | 215 |
| BaeGI | GKGCMC | 1 cut(s) | 406 |
| BanII | GRGCYC | 2 cut(s) | 649, 679 |
| BauI | CACGAG | 2 cut(s) | 399, 840 |
| BbsI | GAAGAC | 1 cut(s) | 228 |
| Bbv12I | GWGCWC | 3 cut(s) | 343, 406, 649 |
| BbvI | GCAGC | 1 cut(s) | 445 |
| BccI | CCATC | 3 cut(s) | 254, 782, 808 |
| BciT130I | CCWGG | 2 cut(s) | 183, 321 |
| BciVI | GTATCC | 1 cut(s) | 559 |
| BcuI | ACTAGT | 1 cut(s) | 107 |
| BfaI | CTAG | 3 cut(s) | 108, 344, 456 |
| BfuAI | ACCTGC | 1 cut(s) | 874 |
| BfuI | GTATCC | 1 cut(s) | 559 |
| BglII | AGATCT | 1 cut(s) | 743 |
| BisI | GCNGC | 1 cut(s) | 434 |
| BlsI | GCNGC | 1 cut(s) | 435 |
| Bme1390I | CCNGG | 2 cut(s) | 183, 321 |
| Bme18I | GGWCC | 1 cut(s) | 215 |
| BmgT120I | GGNCC | 1 cut(s) | 215 |
| BmrFI | CCNGG | 2 cut(s) | 183, 321 |
| BmsI | GCATC | 1 cut(s) | 452 |
| BpiI | GAAGAC | 1 cut(s) | 228 |
| BpuEI | CTTGAG | 1 cut(s) | 855 |
| BsaJI | CCNNGG | 1 cut(s) | 319 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 400, 430 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 588, 691, 706 |
| Bse1I | ACTGG | 2 cut(s) | 464, 514 |
| Bse3DI | GCAATG | 2 cut(s) | 238, 438 |
| BseBI | CCWGG | 2 cut(s) | 183, 321 |
| BseDI | CCNNGG | 1 cut(s) | 319 |
| BseGI | GGATG | 3 cut(s) | 391, 443, 800 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 588, 691, 706 |
| BseMI | GCAATG | 2 cut(s) | 238, 438 |
| BseNI | ACTGG | 2 cut(s) | 464, 514 |
| BseSI | GKGCMC | 1 cut(s) | 406 |
| BseXI | GCAGC | 1 cut(s) | 445 |
| BseYI | CCCAGC | 1 cut(s) | 690 |
| BshFI | GGCC | 1 cut(s) | 574 |
| BsiHKAI | GWGCWC | 3 cut(s) | 343, 406, 649 |
| BslFI | GGGAC | 1 cut(s) | 302 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 588, 691, 706 |
| BsmFI | GGGAC | 1 cut(s) | 302 |
| BsnI | GGCC | 1 cut(s) | 574 |
| Bsp1286I | GDGCHC | 4 cut(s) | 343, 406, 649, 679 |
| Bsp143I | GATC | 5 cut(s) | 43, 530, 694, 709, 743 |
| BspANI | GGCC | 1 cut(s) | 574 |
| BspHI | TCATGA | 1 cut(s) | 37 |
| BspMI | ACCTGC | 1 cut(s) | 874 |
| BspPI | GGATC | 3 cut(s) | 38, 702, 717 |
| BsrDI | GCAATG | 2 cut(s) | 238, 438 |
| BsrI | ACTGG | 2 cut(s) | 464, 514 |
| BssECI | CCNNGG | 1 cut(s) | 319 |
| BssMI | GATC | 5 cut(s) | 43, 530, 694, 709, 743 |
| BssSI | CACGAG | 2 cut(s) | 399, 840 |
| Bst2BI | CACGAG | 2 cut(s) | 399, 840 |
| Bst2UI | CCWGG | 2 cut(s) | 183, 321 |
| Bst4CI | ACNGT | 1 cut(s) | 19 |
| Bst6I | CTCTTC | 1 cut(s) | 76 |
| BstC8I | GCNNGC | 2 cut(s) | 179, 461 |
| BstF5I | GGATG | 3 cut(s) | 391, 443, 800 |
| BstKTI | GATC | 5 cut(s) | 46, 533, 697, 712, 746 |
| BstMBI | GATC | 5 cut(s) | 43, 530, 694, 709, 743 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 430, 696, 875 |
| BstNI | CCWGG | 2 cut(s) | 183, 321 |
| BstNSI | RCATGY | 1 cut(s) | 331 |
| BstSCI | CCNGG | 2 cut(s) | 181, 319 |
| BstSLI | GKGCMC | 1 cut(s) | 406 |
| BstV1I | GCAGC | 1 cut(s) | 445 |
| BstV2I | GAAGAC | 1 cut(s) | 228 |
| BstX2I | RGATCY | 3 cut(s) | 43, 709, 743 |
| BstYI | RGATCY | 3 cut(s) | 43, 709, 743 |
| BsuI | GTATCC | 1 cut(s) | 559 |
| BsuRI | GGCC | 1 cut(s) | 574 |
| BtsCI | GGATG | 3 cut(s) | 391, 443, 800 |
| BveI | ACCTGC | 1 cut(s) | 874 |
| Cac8I | GCNNGC | 2 cut(s) | 179, 461 |
| CciI | TCATGA | 1 cut(s) | 37 |
| Cfr13I | GGNCC | 1 cut(s) | 215 |
| CseI | GACGC | 1 cut(s) | 88 |
| Csp6I | GTAC | 1 cut(s) | 132 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 441, 476 |
| CviJI | RGCY | 5 cut(s) | 146, 459, 574, 647, 677 |
| CviKI_1 | RGCY | 5 cut(s) | 146, 459, 574, 647, 677 |
| CviQI | GTAC | 1 cut(s) | 132 |
| DpnI | GATC | 5 cut(s) | 45, 532, 696, 711, 745 |
| DpnII | GATC | 5 cut(s) | 43, 530, 694, 709, 743 |
| DraI | TTTAAA | 1 cut(s) | 628 |
| Eam1104I | CTCTTC | 1 cut(s) | 76 |
| EarI | CTCTTC | 1 cut(s) | 76 |
| Ecl136II | GAGCTC | 1 cut(s) | 647 |
| Eco24I | GRGCYC | 2 cut(s) | 649, 679 |
| Eco32I | GATATC | 1 cut(s) | 204 |
| Eco47I | GGWCC | 1 cut(s) | 215 |
| Eco53kI | GAGCTC | 1 cut(s) | 647 |
| Eco57I | CTGAAG | 2 cut(s) | 213, 240 |
| EcoICRI | GAGCTC | 1 cut(s) | 647 |
| EcoO109I | RGGNCCY | 1 cut(s) | 215 |
| EcoRI | GAATTC | 1 cut(s) | 653 |
| EcoRII | CCWGG | 2 cut(s) | 181, 319 |
| EcoRV | GATATC | 1 cut(s) | 204 |
| EcoT38I | GRGCYC | 2 cut(s) | 649, 679 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 633, 665 |
| FaqI | GGGAC | 1 cut(s) | 302 |
| Fnu4HI | GCNGC | 1 cut(s) | 434 |
| FokI | GGATG | 3 cut(s) | 398, 430, 787 |
| FriOI | GRGCYC | 2 cut(s) | 649, 679 |
| Fsp4HI | GCNGC | 1 cut(s) | 434 |
| FspBI | CTAG | 3 cut(s) | 108, 344, 456 |
| GluI | GCNGC | 1 cut(s) | 434 |
| GsaI | CCCAGC | 1 cut(s) | 694 |
| HaeIII | GGCC | 1 cut(s) | 574 |
| HgaI | GACGC | 1 cut(s) | 88 |
| HincII | GTYRAC | 1 cut(s) | 859 |
| HindII | GTYRAC | 1 cut(s) | 859 |
| HinfI | GANTC | 5 cut(s) | 124, 305, 500, 607, 727 |
| HphI | GGTGA | 3 cut(s) | 300, 566, 784 |
| Hpy166II | GTNNAC | 2 cut(s) | 404, 859 |
| Hpy188I | TCNGA | 7 cut(s) | 48, 120, 232, 304, 606, 674, 737 |
| Hpy188III | TCNNGA | 5 cut(s) | 38, 207, 534, 650, 872 |
| Hpy8I | GTNNAC | 2 cut(s) | 404, 859 |
| Hpy99I | CGWCG | 1 cut(s) | 104 |
| HpyAV | CCTTC | 3 cut(s) | 259, 275, 321 |
| HpyCH4III | ACNGT | 1 cut(s) | 19 |
| HpyCH4IV | ACGT | 1 cut(s) | 26 |
| HpyCH4V | TGCA | 3 cut(s) | 243, 404, 443 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 430, 696, 875 |
| HpySE526I | ACGT | 1 cut(s) | 26 |
| Kzo9I | GATC | 5 cut(s) | 43, 530, 694, 709, 743 |
| LmnI | GCTCC | 2 cut(s) | 143, 644 |
| Lsp1109I | GCAGC | 1 cut(s) | 445 |
| LweI | GCATC | 1 cut(s) | 452 |
| MaeI | CTAG | 3 cut(s) | 108, 344, 456 |
| MaeII | ACGT | 1 cut(s) | 26 |
| MaeIII | GTNAC | 3 cut(s) | 103, 306, 632 |
| MalI | GATC | 5 cut(s) | 45, 532, 696, 711, 745 |
| MboI | GATC | 5 cut(s) | 43, 530, 694, 709, 743 |
| MboII | GAAGA | 8 cut(s) | 26, 53, 93, 158, 233, 241, 512, 649 |
| MfeI | CAATTG | 1 cut(s) | 155 |
| MflI | RGATCY | 3 cut(s) | 43, 709, 743 |
| MhlI | GDGCHC | 4 cut(s) | 343, 406, 649, 679 |
| MluCI | AATT | 4 cut(s) | 155, 194, 653, 880 |
| MlyI | GAGTC | 1 cut(s) | 314 |
| MmeI | TCCRAC | 1 cut(s) | 71 |
| MseI | TTAA | 1 cut(s) | 627 |
| MspR9I | CCNGG | 2 cut(s) | 183, 321 |
| MunI | CAATTG | 1 cut(s) | 155 |
| MvaI | CCWGG | 2 cut(s) | 183, 321 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 430, 696, 875 |
| NdeII | GATC | 5 cut(s) | 43, 530, 694, 709, 743 |
| NmeAIII | GCCGAG | 1 cut(s) | 850 |
| NmuCI | GTSAC | 1 cut(s) | 306 |
| NspI | RCATGY | 1 cut(s) | 331 |
| PagI | TCATGA | 1 cut(s) | 37 |
| PaqCI | CACCTGC | 1 cut(s) | 874 |
| PfeI | GAWTC | 4 cut(s) | 124, 500, 607, 727 |
| PkrI | GCNGC | 1 cut(s) | 435 |
| PleI | GAGTC | 1 cut(s) | 313 |
| PpsI | GAGTC | 1 cut(s) | 313 |
| PpuMI | RGGWCCY | 1 cut(s) | 215 |
| Psp124BI | GAGCTC | 1 cut(s) | 649 |
| Psp5II | RGGWCCY | 1 cut(s) | 215 |
| Psp6I | CCWGG | 2 cut(s) | 181, 319 |
| PspFI | CCCAGC | 1 cut(s) | 690 |
| PspGI | CCWGG | 2 cut(s) | 181, 319 |
| PspPI | GGNCC | 1 cut(s) | 215 |
| PspPPI | RGGWCCY | 1 cut(s) | 215 |
| PsuI | RGATCY | 3 cut(s) | 43, 709, 743 |
| RsaI | GTAC | 1 cut(s) | 133 |
| RsaNI | GTAC | 1 cut(s) | 132 |
| SacI | GAGCTC | 1 cut(s) | 649 |
| SaqAI | TTAA | 1 cut(s) | 627 |
| SatI | GCNGC | 1 cut(s) | 434 |
| Sau3AI | GATC | 5 cut(s) | 43, 530, 694, 709, 743 |
| Sau96I | GGNCC | 1 cut(s) | 215 |
| SchI | GAGTC | 1 cut(s) | 314 |
| ScrFI | CCNGG | 2 cut(s) | 183, 321 |
| SduI | GDGCHC | 4 cut(s) | 343, 406, 649, 679 |
| SfaNI | GCATC | 1 cut(s) | 452 |
| SinI | GGWCC | 1 cut(s) | 215 |
| SmlI | CTYRAG | 1 cut(s) | 870 |
| SmoI | CTYRAG | 1 cut(s) | 870 |
| SpeI | ACTAGT | 1 cut(s) | 107 |
| Sse9I | AATT | 4 cut(s) | 155, 194, 653, 880 |
| SspMI | CTAG | 3 cut(s) | 108, 344, 456 |
| SstI | GAGCTC | 1 cut(s) | 649 |
| StyD4I | CCNGG | 2 cut(s) | 181, 319 |
| TaaI | ACNGT | 1 cut(s) | 19 |
| TaiI | ACGT | 1 cut(s) | 29 |
| TasI | AATT | 4 cut(s) | 155, 194, 653, 880 |
| TatI | WGTACW | 1 cut(s) | 131 |
| TfiI | GAWTC | 4 cut(s) | 124, 500, 607, 727 |
| Tru1I | TTAA | 1 cut(s) | 627 |
| Tru9I | TTAA | 1 cut(s) | 627 |
| TseFI | GTSAC | 1 cut(s) | 306 |
| TseI | GCWGC | 1 cut(s) | 433 |
| Tsp45I | GTSAC | 1 cut(s) | 306 |
| TspDTI | ATGAA | 3 cut(s) | 26, 54, 608 |
| TspGWI | ACGGA | 1 cut(s) | 421 |
| VneI | GTGCAC | 1 cut(s) | 402 |
| VpaK11BI | GGWCC | 1 cut(s) | 215 |
| XapI | RAATTY | 1 cut(s) | 653 |
| XceI | RCATGY | 1 cut(s) | 331 |
| XspI | CTAG | 3 cut(s) | 108, 344, 456 |