ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 15 - 136 | 2e-27 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 448 |
| AccI | GTMKAC | 1 cut(s) | 31 |
| AfaI | GTAC | 3 cut(s) | 262, 490, 496 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 26, 295 |
| AflII | CTTAAG | 1 cut(s) | 331 |
| AgsI | TTSAA | 3 cut(s) | 62, 239, 284 |
| AhlI | ACTAGT | 1 cut(s) | 491 |
| AjiI | CACGTC | 1 cut(s) | 137 |
| AjnI | CCWGG | 1 cut(s) | 462 |
| AluBI | AGCT | 2 cut(s) | 128, 389 |
| AluI | AGCT | 2 cut(s) | 128, 389 |
| Alw26I | GTCTC | 1 cut(s) | 7 |
| AoxI | GGCC | 1 cut(s) | 193 |
| ApeKI | GCWGC | 1 cut(s) | 125 |
| AspLEI | GCGC | 1 cut(s) | 403 |
| AsuHPI | GGTGA | 1 cut(s) | 203 |
| BanI | GGYRCC | 1 cut(s) | 448 |
| BbsI | GAAGAC | 1 cut(s) | 291 |
| BbvI | GCAGC | 1 cut(s) | 137 |
| BccI | CCATC | 1 cut(s) | 44 |
| BciT130I | CCWGG | 1 cut(s) | 464 |
| BciVI | GTATCC | 1 cut(s) | 61 |
| BcoDI | GTCTC | 1 cut(s) | 7 |
| BcuI | ACTAGT | 1 cut(s) | 491 |
| BfaI | CTAG | 4 cut(s) | 176, 411, 440, 492 |
| BfrI | CTTAAG | 1 cut(s) | 331 |
| BfuI | GTATCC | 1 cut(s) | 61 |
| BisI | GCNGC | 1 cut(s) | 126 |
| BlsI | GCNGC | 1 cut(s) | 127 |
| BmcAI | AGTACT | 1 cut(s) | 496 |
| Bme1390I | CCNGG | 1 cut(s) | 464 |
| BmgBI | CACGTC | 1 cut(s) | 137 |
| BmiI | GGNNCC | 1 cut(s) | 450 |
| BmrFI | CCNGG | 1 cut(s) | 464 |
| BpiI | GAAGAC | 1 cut(s) | 291 |
| BsaAI | YACGTR | 1 cut(s) | 424 |
| BsaJI | CCNNGG | 2 cut(s) | 214, 255 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 26, 295 |
| Bse3DI | GCAATG | 1 cut(s) | 189 |
| BseBI | CCWGG | 1 cut(s) | 464 |
| BseDI | CCNNGG | 2 cut(s) | 214, 255 |
| BseGI | GGATG | 2 cut(s) | 16, 472 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 26, 295 |
| BseMI | GCAATG | 1 cut(s) | 189 |
| BseRI | GAGGAG | 1 cut(s) | 458 |
| BseXI | GCAGC | 1 cut(s) | 137 |
| BsgI | GTGCAG | 1 cut(s) | 249 |
| BshFI | GGCC | 1 cut(s) | 195 |
| BshNI | GGYRCC | 1 cut(s) | 448 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 26, 295 |
| BsmAI | GTCTC | 1 cut(s) | 7 |
| BsnI | GGCC | 1 cut(s) | 195 |
| BspANI | GGCC | 1 cut(s) | 195 |
| BspLI | GGNNCC | 1 cut(s) | 450 |
| BspT107I | GGYRCC | 1 cut(s) | 448 |
| BspTI | CTTAAG | 1 cut(s) | 331 |
| BsrDI | GCAATG | 1 cut(s) | 189 |
| BssECI | CCNNGG | 2 cut(s) | 214, 255 |
| BssT1I | CCWWGG | 1 cut(s) | 214 |
| Bst2UI | CCWGG | 1 cut(s) | 464 |
| Bst4CI | ACNGT | 1 cut(s) | 256 |
| BstAFI | CTTAAG | 1 cut(s) | 331 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 131 |
| BstBAI | YACGTR | 1 cut(s) | 424 |
| BstC8I | GCNNGC | 1 cut(s) | 193 |
| BstDSI | CCRYGG | 1 cut(s) | 255 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 293 |
| BstF5I | GGATG | 2 cut(s) | 16, 472 |
| BstHHI | GCGC | 1 cut(s) | 403 |
| BstMAI | GTCTC | 1 cut(s) | 7 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 131, 188, 407 |
| BstNI | CCWGG | 1 cut(s) | 464 |
| BstSCI | CCNGG | 1 cut(s) | 462 |
| BstSNI | TACGTA | 1 cut(s) | 424 |
| BstV1I | GCAGC | 1 cut(s) | 137 |
| BstV2I | GAAGAC | 1 cut(s) | 291 |
| BsuI | GTATCC | 1 cut(s) | 61 |
| BsuRI | GGCC | 1 cut(s) | 195 |
| BtgI | CCRYGG | 1 cut(s) | 255 |
| BtrI | CACGTC | 1 cut(s) | 137 |
| BtsCI | GGATG | 2 cut(s) | 16, 472 |
| Cac8I | GCNNGC | 1 cut(s) | 193 |
| CfoI | GCGC | 1 cut(s) | 403 |
| Csp6I | GTAC | 3 cut(s) | 261, 489, 495 |
| CviAII | CATG | 1 cut(s) | 220 |
| CviJI | RGCY | 5 cut(s) | 128, 195, 338, 389, 439 |
| CviKI_1 | RGCY | 5 cut(s) | 128, 195, 338, 389, 439 |
| CviQI | GTAC | 3 cut(s) | 261, 489, 495 |
| Eco105I | TACGTA | 1 cut(s) | 424 |
| Eco130I | CCWWGG | 1 cut(s) | 214 |
| Eco147I | AGGCCT | 1 cut(s) | 195 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 293 |
| EcoRII | CCWGG | 1 cut(s) | 462 |
| EcoT14I | CCWWGG | 1 cut(s) | 214 |
| ErhI | CCWWGG | 1 cut(s) | 214 |
| FaeI | CATG | 1 cut(s) | 223 |
| FaiI | YATR | 6 cut(s) | 168, 170, 221, 311, 393, 477 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 314, 346 |
| FatI | CATG | 1 cut(s) | 219 |
| FauNDI | CATATG | 1 cut(s) | 168 |
| FblI | GTMKAC | 1 cut(s) | 31 |
| Fnu4HI | GCNGC | 1 cut(s) | 126 |
| FokI | GGATG | 2 cut(s) | 3, 479 |
| Fsp4HI | GCNGC | 1 cut(s) | 126 |
| FspBI | CTAG | 4 cut(s) | 176, 411, 440, 492 |
| GlaI | GCGC | 1 cut(s) | 402 |
| GluI | GCNGC | 1 cut(s) | 126 |
| HaeIII | GGCC | 1 cut(s) | 195 |
| HhaI | GCGC | 1 cut(s) | 403 |
| Hin1II | CATG | 1 cut(s) | 223 |
| Hin6I | GCGC | 1 cut(s) | 401 |
| HinP1I | GCGC | 1 cut(s) | 401 |
| HincII | GTYRAC | 1 cut(s) | 232 |
| HindII | GTYRAC | 1 cut(s) | 232 |
| HinfI | GANTC | 3 cut(s) | 4, 208, 482 |
| HphI | GGTGA | 1 cut(s) | 203 |
| Hpy166II | GTNNAC | 3 cut(s) | 32, 232, 356 |
| Hpy188I | TCNGA | 1 cut(s) | 295 |
| Hpy188III | TCNNGA | 1 cut(s) | 371 |
| Hpy8I | GTNNAC | 3 cut(s) | 32, 232, 356 |
| HpyAV | CCTTC | 2 cut(s) | 206, 354 |
| HpyCH4III | ACNGT | 1 cut(s) | 256 |
| HpyCH4IV | ACGT | 2 cut(s) | 136, 423 |
| HpyCH4V | TGCA | 3 cut(s) | 134, 251, 266 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 131, 188, 407 |
| HpySE526I | ACGT | 2 cut(s) | 136, 423 |
| Hsp92II | CATG | 1 cut(s) | 223 |
| HspAI | GCGC | 1 cut(s) | 401 |
| LpnPI | CCDG | 7 cut(s) | 57, 177, 302, 402, 449, 465, 476 |
| Lsp1109I | GCAGC | 1 cut(s) | 137 |
| MaeI | CTAG | 4 cut(s) | 176, 411, 440, 492 |
| MaeII | ACGT | 2 cut(s) | 136, 423 |
| MaeIII | GTNAC | 2 cut(s) | 162, 419 |
| MboII | GAAGA | 1 cut(s) | 296 |
| MnlI | CCTC | 6 cut(s) | 74, 289, 307, 436, 439, 472 |
| MseI | TTAA | 2 cut(s) | 42, 332 |
| MspCI | CTTAAG | 1 cut(s) | 331 |
| MspR9I | CCNGG | 1 cut(s) | 464 |
| MvaI | CCWGG | 1 cut(s) | 464 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 131, 188, 407 |
| NdeI | CATATG | 1 cut(s) | 168 |
| NlaIII | CATG | 1 cut(s) | 223 |
| NlaIV | GGNNCC | 1 cut(s) | 450 |
| PceI | AGGCCT | 1 cut(s) | 195 |
| PfeI | GAWTC | 2 cut(s) | 208, 482 |
| PfoI | TCCNGGA | 1 cut(s) | 462 |
| PkrI | GCNGC | 1 cut(s) | 127 |
| Ppu21I | YACGTR | 1 cut(s) | 424 |
| Psp6I | CCWGG | 1 cut(s) | 462 |
| PspGI | CCWGG | 1 cut(s) | 462 |
| PspN4I | GGNNCC | 1 cut(s) | 450 |
| RsaI | GTAC | 3 cut(s) | 262, 490, 496 |
| RsaNI | GTAC | 3 cut(s) | 261, 489, 495 |
| SaqAI | TTAA | 2 cut(s) | 42, 332 |
| SatI | GCNGC | 1 cut(s) | 126 |
| ScaI | AGTACT | 1 cut(s) | 496 |
| ScrFI | CCNGG | 1 cut(s) | 464 |
| SmlI | CTYRAG | 1 cut(s) | 331 |
| SmoI | CTYRAG | 1 cut(s) | 331 |
| SnaBI | TACGTA | 1 cut(s) | 424 |
| SpeI | ACTAGT | 1 cut(s) | 491 |
| SseBI | AGGCCT | 1 cut(s) | 195 |
| SspI | AATATT | 1 cut(s) | 307 |
| SspMI | CTAG | 4 cut(s) | 176, 411, 440, 492 |
| StuI | AGGCCT | 1 cut(s) | 195 |
| StyD4I | CCNGG | 1 cut(s) | 462 |
| StyI | CCWWGG | 1 cut(s) | 214 |
| TaaI | ACNGT | 1 cut(s) | 256 |
| TaiI | ACGT | 2 cut(s) | 139, 426 |
| TatI | WGTACW | 2 cut(s) | 488, 494 |
| TfiI | GAWTC | 2 cut(s) | 208, 482 |
| Tru1I | TTAA | 2 cut(s) | 42, 332 |
| Tru9I | TTAA | 2 cut(s) | 42, 332 |
| TseI | GCWGC | 1 cut(s) | 125 |
| TspDTI | ATGAA | 1 cut(s) | 239 |
| Vha464I | CTTAAG | 1 cut(s) | 331 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 293 |
| XmiI | GTMKAC | 1 cut(s) | 31 |
| XspI | CTAG | 4 cut(s) | 176, 411, 440, 492 |
| ZrmI | AGTACT | 1 cut(s) | 496 |