Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 418, 604 |
| AccI | GTMKAC | 2 cut(s) | 46, 562 |
| AciI | CCGC | 1 cut(s) | 369 |
| AclWI | GGATC | 2 cut(s) | 119, 132 |
| AcoI | YGGCCR | 1 cut(s) | 546 |
| AcsI | RAATTY | 2 cut(s) | 388, 555 |
| AfaI | GTAC | 2 cut(s) | 141, 184 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 178, 179 |
| AgsI | TTSAA | 3 cut(s) | 89, 668, 673 |
| AhlI | ACTAGT | 1 cut(s) | 49 |
| AjnI | CCWGG | 4 cut(s) | 216, 383, 442, 688 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 418, 450, 527, 559 |
| AluBI | AGCT | 4 cut(s) | 73, 105, 325, 719 |
| AluI | AGCT | 4 cut(s) | 73, 105, 325, 719 |
| Alw26I | GTCTC | 7 cut(s) | 115, 356, 365, 444, 590, 612, 769 |
| AlwI | GGATC | 2 cut(s) | 119, 132 |
| AoxI | GGCC | 3 cut(s) | 76, 546, 774 |
| ApeKI | GCWGC | 2 cut(s) | 102, 539 |
| ApoI | RAATTY | 2 cut(s) | 388, 555 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 310 |
| AspS9I | GGNCC | 2 cut(s) | 685, 774 |
| AsuHPI | GGTGA | 1 cut(s) | 140 |
| AvaII | GGWCC | 1 cut(s) | 685 |
| BalI | TGGCCA | 1 cut(s) | 548 |
| BamHI | GGATCC | 1 cut(s) | 124 |
| BbsI | GAAGAC | 1 cut(s) | 228 |
| BbvI | GCAGC | 2 cut(s) | 114, 551 |
| BccI | CCATC | 6 cut(s) | 92, 169, 425, 641, 718, 722 |
| BciT130I | CCWGG | 4 cut(s) | 218, 385, 444, 690 |
| BciVI | GTATCC | 1 cut(s) | 302 |
| BcoDI | GTCTC | 7 cut(s) | 115, 356, 365, 444, 590, 612, 769 |
| BcuI | ACTAGT | 1 cut(s) | 49 |
| BfaI | CTAG | 4 cut(s) | 50, 74, 248, 423 |
| BfmI | CTRYAG | 1 cut(s) | 355 |
| BfuI | GTATCC | 1 cut(s) | 302 |
| BisI | GCNGC | 2 cut(s) | 103, 540 |
| BlsI | GCNGC | 2 cut(s) | 104, 541 |
| BmcAI | AGTACT | 1 cut(s) | 141 |
| Bme1390I | CCNGG | 4 cut(s) | 218, 385, 444, 690 |
| Bme18I | GGWCC | 1 cut(s) | 685 |
| BmgT120I | GGNCC | 2 cut(s) | 685, 774 |
| BmiI | GGNNCC | 2 cut(s) | 126, 687 |
| BmrFI | CCNGG | 4 cut(s) | 218, 385, 444, 690 |
| BmrI | ACTGGG | 1 cut(s) | 561 |
| BmuI | ACTGGG | 1 cut(s) | 561 |
| BpiI | GAAGAC | 1 cut(s) | 228 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 398, 430 |
| BpmI | CTGGAG | 1 cut(s) | 475 |
| BsaBI | GATNNNNATC | 1 cut(s) | 657 |
| BsaI | GGTCTC | 3 cut(s) | 356, 444, 769 |
| BsaJI | CCNNGG | 4 cut(s) | 128, 443, 688, 689 |
| BsaWI | WCCGGW | 1 cut(s) | 661 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 499, 529 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 178, 179 |
| Bse1I | ACTGG | 3 cut(s) | 137, 288, 567 |
| Bse8I | GATNNNNATC | 1 cut(s) | 657 |
| BseBI | CCWGG | 4 cut(s) | 218, 385, 444, 690 |
| BseDI | CCNNGG | 4 cut(s) | 128, 443, 688, 689 |
| BseGI | GGATG | 2 cut(s) | 658, 733 |
| BseJI | GATNNNNATC | 1 cut(s) | 657 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 178, 179 |
| BseMII | CTCAG | 1 cut(s) | 71 |
| BseNI | ACTGG | 3 cut(s) | 137, 288, 567 |
| BseRI | GAGGAG | 1 cut(s) | 281 |
| BseXI | GCAGC | 2 cut(s) | 114, 551 |
| BshFI | GGCC | 3 cut(s) | 78, 548, 776 |
| BsiSI | CCGG | 1 cut(s) | 662 |
| BslFI | GGGAC | 2 cut(s) | 615, 671 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 178, 179 |
| BsmAI | GTCTC | 7 cut(s) | 115, 356, 365, 444, 590, 612, 769 |
| BsmBI | CGTCTC | 1 cut(s) | 612 |
| BsmFI | GGGAC | 2 cut(s) | 615, 671 |
| BsmI | GAATGC | 2 cut(s) | 10, 477 |
| BsnI | GGCC | 3 cut(s) | 78, 548, 776 |
| Bso31I | GGTCTC | 3 cut(s) | 356, 444, 769 |
| Bsp143I | GATC | 2 cut(s) | 124, 751 |
| BspACI | CCGC | 1 cut(s) | 369 |
| BspANI | GGCC | 3 cut(s) | 78, 548, 776 |
| BspCNI | CTCAG | 1 cut(s) | 72 |
| BspHI | TCATGA | 1 cut(s) | 19 |
| BspLI | GGNNCC | 2 cut(s) | 126, 687 |
| BspPI | GGATC | 2 cut(s) | 119, 132 |
| BspTNI | GGTCTC | 3 cut(s) | 356, 444, 769 |
| BsrI | ACTGG | 3 cut(s) | 137, 288, 567 |
| BssECI | CCNNGG | 4 cut(s) | 128, 443, 688, 689 |
| BssMI | GATC | 2 cut(s) | 124, 751 |
| BssNAI | GTATAC | 1 cut(s) | 47 |
| BssT1I | CCWWGG | 1 cut(s) | 128 |
| Bst1107I | GTATAC | 1 cut(s) | 47 |
| Bst2UI | CCWGG | 4 cut(s) | 218, 385, 444, 690 |
| Bst4CI | ACNGT | 1 cut(s) | 258 |
| Bst6I | CTCTTC | 2 cut(s) | 301, 668 |
| BstC8I | GCNNGC | 1 cut(s) | 475 |
| BstDEI | CTNAG | 1 cut(s) | 80 |
| BstF5I | GGATG | 2 cut(s) | 658, 733 |
| BstKTI | GATC | 2 cut(s) | 127, 754 |
| BstMAI | GTCTC | 7 cut(s) | 115, 356, 365, 444, 590, 612, 769 |
| BstMBI | GATC | 2 cut(s) | 124, 751 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 331, 406, 545 |
| BstNI | CCWGG | 4 cut(s) | 218, 385, 444, 690 |
| BstSCI | CCNGG | 4 cut(s) | 216, 383, 442, 688 |
| BstSFI | CTRYAG | 1 cut(s) | 355 |
| BstV1I | GCAGC | 2 cut(s) | 114, 551 |
| BstV2I | GAAGAC | 1 cut(s) | 228 |
| BstX2I | RGATCY | 1 cut(s) | 124 |
| BstYI | RGATCY | 1 cut(s) | 124 |
| BstZ17I | GTATAC | 1 cut(s) | 47 |
| BsuI | GTATCC | 1 cut(s) | 302 |
| BsuRI | GGCC | 3 cut(s) | 78, 548, 776 |
| BtsCI | GGATG | 2 cut(s) | 658, 733 |
| Cac8I | GCNNGC | 1 cut(s) | 475 |
| CciI | TCATGA | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 2 cut(s) | 685, 774 |
| Csp6I | GTAC | 2 cut(s) | 140, 183 |
| CviAII | CATG | 4 cut(s) | 20, 36, 262, 695 |
| CviJI | RGCY | 8 cut(s) | 73, 78, 105, 325, 511, 548, 719, 776 |
| CviKI_1 | RGCY | 8 cut(s) | 73, 78, 105, 325, 511, 548, 719, 776 |
| CviQI | GTAC | 2 cut(s) | 140, 183 |
| DdeI | CTNAG | 1 cut(s) | 80 |
| DpnI | GATC | 2 cut(s) | 126, 753 |
| DpnII | GATC | 2 cut(s) | 124, 751 |
| DraI | TTTAAA | 1 cut(s) | 573 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 418, 604 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 418, 604 |
| EaeI | YGGCCR | 1 cut(s) | 546 |
| Eam1104I | CTCTTC | 2 cut(s) | 301, 668 |
| EarI | CTCTTC | 2 cut(s) | 301, 668 |
| Eco130I | CCWWGG | 1 cut(s) | 128 |
| Eco147I | AGGCCT | 1 cut(s) | 78 |
| Eco31I | GGTCTC | 3 cut(s) | 356, 444, 769 |
| Eco32I | GATATC | 1 cut(s) | 374 |
| Eco47I | GGWCC | 1 cut(s) | 685 |
| EcoO109I | RGGNCCY | 1 cut(s) | 685 |
| EcoRII | CCWGG | 4 cut(s) | 216, 383, 442, 688 |
| EcoRV | GATATC | 1 cut(s) | 374 |
| EcoT14I | CCWWGG | 1 cut(s) | 128 |
| EcoT22I | ATGCAT | 1 cut(s) | 37 |
| ErhI | CCWWGG | 1 cut(s) | 128 |
| Esp3I | CGTCTC | 1 cut(s) | 612 |
| FaeI | CATG | 4 cut(s) | 23, 39, 265, 698 |
| FaqI | GGGAC | 2 cut(s) | 615, 671 |
| FatI | CATG | 4 cut(s) | 19, 35, 261, 694 |
| FauNDI | CATATG | 1 cut(s) | 31 |
| FblI | GTMKAC | 2 cut(s) | 46, 562 |
| Fnu4HI | GCNGC | 2 cut(s) | 103, 540 |
| FokI | GGATG | 2 cut(s) | 665, 740 |
| Fsp4HI | GCNGC | 2 cut(s) | 103, 540 |
| FspBI | CTAG | 4 cut(s) | 50, 74, 248, 423 |
| GluI | GCNGC | 2 cut(s) | 103, 540 |
| GsuI | CTGGAG | 1 cut(s) | 475 |
| HaeIII | GGCC | 3 cut(s) | 78, 548, 776 |
| HapII | CCGG | 1 cut(s) | 662 |
| Hin1II | CATG | 4 cut(s) | 23, 39, 265, 698 |
| HinfI | GANTC | 3 cut(s) | 301, 311, 737 |
| HpaII | CCGG | 1 cut(s) | 662 |
| HphI | GGTGA | 1 cut(s) | 140 |
| Hpy166II | GTNNAC | 2 cut(s) | 47, 563 |
| Hpy188I | TCNGA | 1 cut(s) | 319 |
| Hpy188III | TCNNGA | 5 cut(s) | 20, 172, 423, 454, 734 |
| Hpy8I | GTNNAC | 2 cut(s) | 47, 563 |
| HpyAV | CCTTC | 1 cut(s) | 529 |
| HpyCH4III | ACNGT | 1 cut(s) | 258 |
| HpyCH4IV | ACGT | 3 cut(s) | 378, 419, 605 |
| HpyCH4V | TGCA | 1 cut(s) | 35 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 331, 406, 545 |
| HpyF3I | CTNAG | 1 cut(s) | 80 |
| HpySE526I | ACGT | 3 cut(s) | 378, 419, 605 |
| Hsp92II | CATG | 4 cut(s) | 23, 39, 265, 698 |
| Kzo9I | GATC | 2 cut(s) | 124, 751 |
| LmnI | GCTCC | 1 cut(s) | 406 |
| Lsp1109I | GCAGC | 2 cut(s) | 114, 551 |
| MaeI | CTAG | 4 cut(s) | 50, 74, 248, 423 |
| MaeII | ACGT | 3 cut(s) | 378, 419, 605 |
| MalI | GATC | 2 cut(s) | 126, 753 |
| MboI | GATC | 2 cut(s) | 124, 751 |
| MboII | GAAGA | 5 cut(s) | 233, 263, 318, 472, 685 |
| MfeI | CAATTG | 1 cut(s) | 668 |
| MflI | RGATCY | 1 cut(s) | 124 |
| MlsI | TGGCCA | 1 cut(s) | 548 |
| MluCI | AATT | 5 cut(s) | 90, 388, 489, 555, 668 |
| MluNI | TGGCCA | 1 cut(s) | 548 |
| MlyI | GAGTC | 2 cut(s) | 310, 731 |
| Mox20I | TGGCCA | 1 cut(s) | 548 |
| Mph1103I | ATGCAT | 1 cut(s) | 37 |
| MroXI | GAANNNNTTC | 1 cut(s) | 310 |
| MscI | TGGCCA | 1 cut(s) | 548 |
| MseI | TTAA | 1 cut(s) | 572 |
| MslI | CAYNNNNRTG | 2 cut(s) | 34, 638 |
| Msp20I | TGGCCA | 1 cut(s) | 548 |
| MspI | CCGG | 1 cut(s) | 662 |
| MspR9I | CCNGG | 4 cut(s) | 218, 385, 444, 690 |
| MunI | CAATTG | 1 cut(s) | 668 |
| Mva1269I | GAATGC | 2 cut(s) | 10, 477 |
| MvaI | CCWGG | 4 cut(s) | 218, 385, 444, 690 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 331, 406, 545 |
| NdeI | CATATG | 1 cut(s) | 31 |
| NdeII | GATC | 2 cut(s) | 124, 751 |
| NlaIII | CATG | 4 cut(s) | 23, 39, 265, 698 |
| NlaIV | GGNNCC | 2 cut(s) | 126, 687 |
| NsiI | ATGCAT | 1 cut(s) | 37 |
| PagI | TCATGA | 1 cut(s) | 19 |
| PasI | CCCWGGG | 1 cut(s) | 689 |
| PceI | AGGCCT | 1 cut(s) | 78 |
| PctI | GAATGC | 2 cut(s) | 10, 477 |
| PdmI | GAANNNNTTC | 1 cut(s) | 310 |
| PfeI | GAWTC | 1 cut(s) | 311 |
| PflFI | GACNNNGTC | 1 cut(s) | 348 |
| PkrI | GCNGC | 2 cut(s) | 104, 541 |
| PleI | GAGTC | 2 cut(s) | 309, 731 |
| PpsI | GAGTC | 2 cut(s) | 309, 731 |
| PpuMI | RGGWCCY | 1 cut(s) | 685 |
| Psp5II | RGGWCCY | 1 cut(s) | 685 |
| Psp6I | CCWGG | 4 cut(s) | 216, 383, 442, 688 |
| PspGI | CCWGG | 4 cut(s) | 216, 383, 442, 688 |
| PspN4I | GGNNCC | 2 cut(s) | 126, 687 |
| PspPI | GGNCC | 2 cut(s) | 685, 774 |
| PspPPI | RGGWCCY | 1 cut(s) | 685 |
| PsuI | RGATCY | 1 cut(s) | 124 |
| PsyI | GACNNNGTC | 1 cut(s) | 348 |
| RsaI | GTAC | 2 cut(s) | 141, 184 |
| RsaNI | GTAC | 2 cut(s) | 140, 183 |
| RseI | CAYNNNNRTG | 2 cut(s) | 34, 638 |
| SaqAI | TTAA | 1 cut(s) | 572 |
| SatI | GCNGC | 2 cut(s) | 103, 540 |
| Sau3AI | GATC | 2 cut(s) | 124, 751 |
| Sau96I | GGNCC | 2 cut(s) | 685, 774 |
| ScaI | AGTACT | 1 cut(s) | 141 |
| SchI | GAGTC | 2 cut(s) | 310, 731 |
| ScrFI | CCNGG | 4 cut(s) | 218, 385, 444, 690 |
| SfcI | CTRYAG | 1 cut(s) | 355 |
| SinI | GGWCC | 1 cut(s) | 685 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 34, 638 |
| SpeI | ACTAGT | 1 cut(s) | 49 |
| Sse9I | AATT | 5 cut(s) | 90, 388, 489, 555, 668 |
| SseBI | AGGCCT | 1 cut(s) | 78 |
| SsiI | CCGC | 1 cut(s) | 369 |
| SspMI | CTAG | 4 cut(s) | 50, 74, 248, 423 |
| StuI | AGGCCT | 1 cut(s) | 78 |
| StyD4I | CCNGG | 4 cut(s) | 216, 383, 442, 688 |
| StyI | CCWWGG | 1 cut(s) | 128 |
| TaaI | ACNGT | 1 cut(s) | 258 |
| TaiI | ACGT | 3 cut(s) | 381, 422, 608 |
| TaqI | TCGA | 2 cut(s) | 157, 304 |
| TasI | AATT | 5 cut(s) | 90, 388, 489, 555, 668 |
| TatI | WGTACW | 1 cut(s) | 139 |
| TfiI | GAWTC | 1 cut(s) | 311 |
| Tru1I | TTAA | 1 cut(s) | 572 |
| Tru9I | TTAA | 1 cut(s) | 572 |
| TseI | GCWGC | 2 cut(s) | 102, 539 |
| TspDTI | ATGAA | 4 cut(s) | 17, 199, 250, 303 |
| TspGWI | ACGGA | 1 cut(s) | 200 |
| Tth111I | GACNNNGTC | 1 cut(s) | 348 |
| VpaK11BI | GGWCC | 1 cut(s) | 685 |
| XapI | RAATTY | 2 cut(s) | 388, 555 |
| XbaI | TCTAGA | 1 cut(s) | 422 |
| XmiI | GTMKAC | 2 cut(s) | 46, 562 |
| XmnI | GAANNNNTTC | 1 cut(s) | 310 |
| XspI | CTAG | 4 cut(s) | 50, 74, 248, 423 |
| ZrmI | AGTACT | 1 cut(s) | 141 |
| Zsp2I | ATGCAT | 1 cut(s) | 37 |