Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 75 - 167 | 7.1e-09 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 224 |
| Acc36I | ACCTGC | 2 cut(s) | 164, 224 |
| AcsI | RAATTY | 1 cut(s) | 284 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 323 |
| AgsI | TTSAA | 4 cut(s) | 416, 430, 439, 469 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 333 |
| AluBI | AGCT | 6 cut(s) | 20, 70, 77, 217, 353, 359 |
| AluI | AGCT | 6 cut(s) | 20, 70, 77, 217, 353, 359 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 353 |
| ApeKI | GCWGC | 2 cut(s) | 70, 145 |
| ApoI | RAATTY | 1 cut(s) | 284 |
| AspS9I | GGNCC | 2 cut(s) | 120, 139 |
| AsuHPI | GGTGA | 3 cut(s) | 223, 248, 431 |
| AvaII | GGWCC | 2 cut(s) | 120, 139 |
| BbvI | GCAGC | 2 cut(s) | 57, 157 |
| BccI | CCATC | 2 cut(s) | 317, 501 |
| BfaI | CTAG | 3 cut(s) | 159, 204, 402 |
| BfmI | CTRYAG | 1 cut(s) | 354 |
| BfuAI | ACCTGC | 2 cut(s) | 164, 224 |
| BisI | GCNGC | 2 cut(s) | 71, 146 |
| BlsI | GCNGC | 2 cut(s) | 72, 147 |
| Bme18I | GGWCC | 2 cut(s) | 120, 139 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 333 |
| BmgT120I | GGNCC | 2 cut(s) | 120, 139 |
| BmiI | GGNNCC | 1 cut(s) | 195 |
| BmsI | GCATC | 3 cut(s) | 160, 285, 412 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 323 |
| BseGI | GGATG | 3 cut(s) | 300, 499, 512 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BseMII | CTCAG | 1 cut(s) | 72 |
| BseRI | GAGGAG | 2 cut(s) | 186, 189 |
| BseXI | GCAGC | 2 cut(s) | 57, 157 |
| BsgI | GTGCAG | 2 cut(s) | 252, 288 |
| BslFI | GGGAC | 1 cut(s) | 340 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BsmFI | GGGAC | 1 cut(s) | 340 |
| BspCNI | CTCAG | 1 cut(s) | 73 |
| BspLI | GGNNCC | 1 cut(s) | 195 |
| BspMI | ACCTGC | 2 cut(s) | 164, 224 |
| Bst4CI | ACNGT | 2 cut(s) | 230, 452 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 151 |
| BstC8I | GCNNGC | 1 cut(s) | 75 |
| BstDEI | CTNAG | 2 cut(s) | 81, 332 |
| BstF5I | GGATG | 3 cut(s) | 300, 499, 512 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 151, 350 |
| BstSFI | CTRYAG | 1 cut(s) | 354 |
| BstV1I | GCAGC | 2 cut(s) | 57, 157 |
| BtsCI | GGATG | 3 cut(s) | 300, 499, 512 |
| BveI | ACCTGC | 2 cut(s) | 164, 224 |
| Cac8I | GCNNGC | 1 cut(s) | 75 |
| CaiI | CAGNNNCTG | 1 cut(s) | 353 |
| Cfr13I | GGNCC | 2 cut(s) | 120, 139 |
| CviAII | CATG | 2 cut(s) | 35, 503 |
| DdeI | CTNAG | 2 cut(s) | 81, 332 |
| DriI | GACNNNNNGTC | 1 cut(s) | 333 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 333 |
| Eco47I | GGWCC | 2 cut(s) | 120, 139 |
| FaeI | CATG | 2 cut(s) | 38, 506 |
| FaiI | YATR | 5 cut(s) | 36, 57, 263, 369, 504 |
| FaqI | GGGAC | 1 cut(s) | 340 |
| FatI | CATG | 2 cut(s) | 34, 502 |
| Fnu4HI | GCNGC | 2 cut(s) | 71, 146 |
| FokI | GGATG | 2 cut(s) | 307, 506 |
| Fsp4HI | GCNGC | 2 cut(s) | 71, 146 |
| FspBI | CTAG | 3 cut(s) | 159, 204, 402 |
| GluI | GCNGC | 2 cut(s) | 71, 146 |
| Hin1II | CATG | 2 cut(s) | 38, 506 |
| HindIII | AAGCTT | 2 cut(s) | 75, 215 |
| HinfI | GANTC | 1 cut(s) | 372 |
| HphI | GGTGA | 3 cut(s) | 223, 248, 431 |
| Hpy188I | TCNGA | 1 cut(s) | 82 |
| Hpy188III | TCNNGA | 1 cut(s) | 278 |
| HpyAV | CCTTC | 4 cut(s) | 246, 285, 410, 433 |
| HpyCH4III | ACNGT | 2 cut(s) | 230, 452 |
| HpyCH4V | TGCA | 8 cut(s) | 73, 128, 154, 173, 233, 269, 298, 305 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 151, 350 |
| HpyF3I | CTNAG | 2 cut(s) | 81, 332 |
| Hsp92II | CATG | 2 cut(s) | 38, 506 |
| LmnI | GCTCC | 2 cut(s) | 67, 199 |
| LpnPI | CCDG | 5 cut(s) | 155, 159, 219, 284, 330 |
| Lsp1109I | GCAGC | 2 cut(s) | 57, 157 |
| LweI | GCATC | 3 cut(s) | 160, 285, 412 |
| MaeI | CTAG | 3 cut(s) | 159, 204, 402 |
| MaeIII | GTNAC | 1 cut(s) | 161 |
| MluCI | AATT | 2 cut(s) | 183, 284 |
| MlyI | GAGTC | 1 cut(s) | 381 |
| MnlI | CCTC | 5 cut(s) | 106, 184, 207, 210, 484 |
| MseI | TTAA | 3 cut(s) | 182, 362, 498 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 151, 350 |
| NlaIII | CATG | 2 cut(s) | 38, 506 |
| NlaIV | GGNNCC | 1 cut(s) | 195 |
| NmuCI | GTSAC | 1 cut(s) | 161 |
| PaqCI | CACCTGC | 1 cut(s) | 224 |
| PkrI | GCNGC | 2 cut(s) | 72, 147 |
| PleI | GAGTC | 1 cut(s) | 380 |
| PpsI | GAGTC | 1 cut(s) | 380 |
| PspN4I | GGNNCC | 1 cut(s) | 195 |
| PspPI | GGNCC | 2 cut(s) | 120, 139 |
| PstNI | CAGNNNCTG | 1 cut(s) | 353 |
| SaqAI | TTAA | 3 cut(s) | 182, 362, 498 |
| SatI | GCNGC | 2 cut(s) | 71, 146 |
| Sau96I | GGNCC | 2 cut(s) | 120, 139 |
| SchI | GAGTC | 1 cut(s) | 381 |
| SfaNI | GCATC | 3 cut(s) | 160, 285, 412 |
| SfcI | CTRYAG | 1 cut(s) | 354 |
| SinI | GGWCC | 2 cut(s) | 120, 139 |
| Sse9I | AATT | 2 cut(s) | 183, 284 |
| SspMI | CTAG | 3 cut(s) | 159, 204, 402 |
| TaaI | ACNGT | 2 cut(s) | 230, 452 |
| TasI | AATT | 2 cut(s) | 183, 284 |
| Tru1I | TTAA | 3 cut(s) | 182, 362, 498 |
| Tru9I | TTAA | 3 cut(s) | 182, 362, 498 |
| TseFI | GTSAC | 1 cut(s) | 161 |
| TseI | GCWGC | 2 cut(s) | 70, 145 |
| Tsp45I | GTSAC | 1 cut(s) | 161 |
| TspDTI | ATGAA | 3 cut(s) | 44, 209, 297 |
| TspGWI | ACGGA | 1 cut(s) | 327 |
| VpaK11BI | GGWCC | 2 cut(s) | 120, 139 |
| XapI | RAATTY | 1 cut(s) | 284 |
| XspI | CTAG | 3 cut(s) | 159, 204, 402 |