ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 3 - 93 | 4.8e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 146 |
| AccIII | TCCGGA | 1 cut(s) | 151 |
| AciI | CCGC | 2 cut(s) | 50, 77 |
| AclWI | GGATC | 1 cut(s) | 162 |
| AcsI | RAATTY | 1 cut(s) | 94 |
| AcvI | CACGTG | 1 cut(s) | 234 |
| AflIII | ACRYGT | 1 cut(s) | 231 |
| AgsI | TTSAA | 3 cut(s) | 41, 139, 311 |
| AluBI | AGCT | 2 cut(s) | 254, 288 |
| AluI | AGCT | 2 cut(s) | 254, 288 |
| AlwI | GGATC | 1 cut(s) | 162 |
| Aor13HI | TCCGGA | 1 cut(s) | 151 |
| ApeKI | GCWGC | 2 cut(s) | 74, 254 |
| ApoI | RAATTY | 1 cut(s) | 94 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 8, 63, 315 |
| AspS9I | GGNCC | 1 cut(s) | 170 |
| AvaII | GGWCC | 1 cut(s) | 170 |
| BauI | CACGAG | 1 cut(s) | 54 |
| BbrPI | CACGTG | 1 cut(s) | 234 |
| BbsI | GAAGAC | 1 cut(s) | 56 |
| BbvI | GCAGC | 2 cut(s) | 61, 241 |
| BccI | CCATC | 1 cut(s) | 267 |
| BclI | TGATCA | 1 cut(s) | 123 |
| BfaI | CTAG | 1 cut(s) | 47 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 50 |
| BisI | GCNGC | 3 cut(s) | 51, 75, 255 |
| BlsI | GCNGC | 3 cut(s) | 52, 76, 256 |
| Bme18I | GGWCC | 1 cut(s) | 170 |
| BmgT120I | GGNCC | 1 cut(s) | 170 |
| BmiI | GGNNCC | 1 cut(s) | 171 |
| BpiI | GAAGAC | 1 cut(s) | 56 |
| BpuEI | CTTGAG | 2 cut(s) | 125, 188 |
| BsaAI | YACGTR | 1 cut(s) | 234 |
| BsaWI | WCCGGW | 1 cut(s) | 151 |
| BseAI | TCCGGA | 1 cut(s) | 151 |
| BseXI | GCAGC | 2 cut(s) | 61, 241 |
| BsiSI | CCGG | 1 cut(s) | 152 |
| BslFI | GGGAC | 1 cut(s) | 183 |
| BsmFI | GGGAC | 1 cut(s) | 183 |
| Bsp13I | TCCGGA | 1 cut(s) | 151 |
| Bsp143I | GATC | 3 cut(s) | 123, 154, 207 |
| BspACI | CCGC | 2 cut(s) | 50, 77 |
| BspEI | TCCGGA | 1 cut(s) | 151 |
| BspHI | TCATGA | 1 cut(s) | 126 |
| BspLI | GGNNCC | 1 cut(s) | 171 |
| BspPI | GGATC | 1 cut(s) | 162 |
| BssMI | GATC | 3 cut(s) | 123, 154, 207 |
| BssSI | CACGAG | 1 cut(s) | 54 |
| Bst2BI | CACGAG | 1 cut(s) | 54 |
| Bst4CI | ACNGT | 2 cut(s) | 9, 353 |
| BstBAI | YACGTR | 1 cut(s) | 234 |
| BstKTI | GATC | 3 cut(s) | 126, 157, 210 |
| BstMBI | GATC | 3 cut(s) | 123, 154, 207 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 50, 251, 275 |
| BstV1I | GCAGC | 2 cut(s) | 61, 241 |
| BstV2I | GAAGAC | 1 cut(s) | 56 |
| BstX2I | RGATCY | 1 cut(s) | 154 |
| BstYI | RGATCY | 1 cut(s) | 154 |
| CciI | TCATGA | 1 cut(s) | 126 |
| Cfr13I | GGNCC | 1 cut(s) | 170 |
| CviAII | CATG | 2 cut(s) | 127, 164 |
| CviJI | RGCY | 6 cut(s) | 44, 53, 74, 134, 254, 288 |
| CviKI_1 | RGCY | 6 cut(s) | 44, 53, 74, 134, 254, 288 |
| DpnI | GATC | 3 cut(s) | 125, 156, 209 |
| DpnII | GATC | 3 cut(s) | 123, 154, 207 |
| Eco47I | GGWCC | 1 cut(s) | 170 |
| Eco72I | CACGTG | 1 cut(s) | 234 |
| EcoO109I | RGGNCCY | 1 cut(s) | 170 |
| FaeI | CATG | 2 cut(s) | 130, 167 |
| FaiI | YATR | 3 cut(s) | 128, 165, 347 |
| FaqI | GGGAC | 1 cut(s) | 183 |
| FatI | CATG | 2 cut(s) | 126, 163 |
| FbaI | TGATCA | 1 cut(s) | 123 |
| FblI | GTMKAC | 1 cut(s) | 146 |
| Fnu4HI | GCNGC | 3 cut(s) | 51, 75, 255 |
| Fsp4HI | GCNGC | 3 cut(s) | 51, 75, 255 |
| FspBI | CTAG | 1 cut(s) | 47 |
| GluI | GCNGC | 3 cut(s) | 51, 75, 255 |
| HapII | CCGG | 1 cut(s) | 152 |
| Hin1II | CATG | 2 cut(s) | 130, 167 |
| HinfI | GANTC | 2 cut(s) | 113, 299 |
| HpaII | CCGG | 1 cut(s) | 152 |
| Hpy166II | GTNNAC | 2 cut(s) | 147, 181 |
| Hpy188III | TCNNGA | 7 cut(s) | 56, 104, 121, 127, 152, 205, 320 |
| Hpy8I | GTNNAC | 2 cut(s) | 147, 181 |
| HpyAV | CCTTC | 3 cut(s) | 41, 53, 124 |
| HpyCH4III | ACNGT | 2 cut(s) | 9, 353 |
| HpyCH4IV | ACGT | 3 cut(s) | 18, 36, 233 |
| HpyCH4V | TGCA | 1 cut(s) | 199 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 50, 251, 275 |
| HpySE526I | ACGT | 3 cut(s) | 18, 36, 233 |
| Hsp92II | CATG | 2 cut(s) | 130, 167 |
| Kpn2I | TCCGGA | 1 cut(s) | 151 |
| Ksp22I | TGATCA | 1 cut(s) | 123 |
| Kzo9I | GATC | 3 cut(s) | 123, 154, 207 |
| LmnI | GCTCC | 2 cut(s) | 215, 293 |
| LpnPI | CCDG | 5 cut(s) | 134, 165, 186, 298, 333 |
| Lsp1109I | GCAGC | 2 cut(s) | 61, 241 |
| MaeI | CTAG | 1 cut(s) | 47 |
| MaeII | ACGT | 3 cut(s) | 18, 36, 233 |
| MalI | GATC | 3 cut(s) | 125, 156, 209 |
| MboI | GATC | 3 cut(s) | 123, 154, 207 |
| MboII | GAAGA | 3 cut(s) | 15, 56, 323 |
| MflI | RGATCY | 1 cut(s) | 154 |
| MluCI | AATT | 1 cut(s) | 94 |
| MroI | TCCGGA | 1 cut(s) | 151 |
| MroXI | GAANNNNTTC | 3 cut(s) | 8, 63, 315 |
| MseI | TTAA | 2 cut(s) | 294, 361 |
| MspI | CCGG | 1 cut(s) | 152 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 50, 251, 275 |
| NdeII | GATC | 3 cut(s) | 123, 154, 207 |
| NlaIII | CATG | 2 cut(s) | 130, 167 |
| NlaIV | GGNNCC | 1 cut(s) | 171 |
| PagI | TCATGA | 1 cut(s) | 126 |
| PdmI | GAANNNNTTC | 3 cut(s) | 8, 63, 315 |
| PfeI | GAWTC | 2 cut(s) | 113, 299 |
| PkrI | GCNGC | 3 cut(s) | 52, 76, 256 |
| PmaCI | CACGTG | 1 cut(s) | 234 |
| PmlI | CACGTG | 1 cut(s) | 234 |
| Ppu21I | YACGTR | 1 cut(s) | 234 |
| PpuMI | RGGWCCY | 1 cut(s) | 170 |
| Psp5II | RGGWCCY | 1 cut(s) | 170 |
| PspCI | CACGTG | 1 cut(s) | 234 |
| PspN4I | GGNNCC | 1 cut(s) | 171 |
| PspPI | GGNCC | 1 cut(s) | 170 |
| PspPPI | RGGWCCY | 1 cut(s) | 170 |
| PsuI | RGATCY | 1 cut(s) | 154 |
| SaqAI | TTAA | 2 cut(s) | 294, 361 |
| SatI | GCNGC | 3 cut(s) | 51, 75, 255 |
| Sau3AI | GATC | 3 cut(s) | 123, 154, 207 |
| Sau96I | GGNCC | 1 cut(s) | 170 |
| SetI | ASST | 7 cut(s) | 21, 39, 64, 175, 236, 256, 290 |
| SinI | GGWCC | 1 cut(s) | 170 |
| SmlI | CTYRAG | 2 cut(s) | 104, 203 |
| SmoI | CTYRAG | 2 cut(s) | 104, 203 |
| Sse9I | AATT | 1 cut(s) | 94 |
| SsiI | CCGC | 2 cut(s) | 50, 77 |
| SspMI | CTAG | 1 cut(s) | 47 |
| TaaI | ACNGT | 2 cut(s) | 9, 353 |
| TaiI | ACGT | 3 cut(s) | 21, 39, 236 |
| TaqI | TCGA | 1 cut(s) | 249 |
| TasI | AATT | 1 cut(s) | 94 |
| TauI | GCSGC | 1 cut(s) | 53 |
| TfiI | GAWTC | 2 cut(s) | 113, 299 |
| Tru1I | TTAA | 2 cut(s) | 294, 361 |
| Tru9I | TTAA | 2 cut(s) | 294, 361 |
| TseI | GCWGC | 2 cut(s) | 74, 254 |
| TspDTI | ATGAA | 2 cut(s) | 17, 143 |
| VpaK11BI | GGWCC | 1 cut(s) | 170 |
| XapI | RAATTY | 1 cut(s) | 94 |
| XmiI | GTMKAC | 1 cut(s) | 146 |
| XmnI | GAANNNNTTC | 3 cut(s) | 8, 63, 315 |
| XspI | CTAG | 1 cut(s) | 47 |