Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 179, 369 |
| AccB1I | GGYRCC | 2 cut(s) | 179, 369 |
| AciI | CCGC | 2 cut(s) | 40, 304 |
| AclWI | GGATC | 2 cut(s) | 119, 132 |
| AcuI | CTGAAG | 1 cut(s) | 413 |
| AcvI | CACGTG | 1 cut(s) | 619 |
| AcyI | GRCGYC | 1 cut(s) | 508 |
| AfaI | GTAC | 3 cut(s) | 181, 353, 371 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 120, 121, 189, 397 |
| AflIII | ACRYGT | 1 cut(s) | 618 |
| AgsI | TTSAA | 3 cut(s) | 259, 625, 670 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 660 |
| AhlI | ACTAGT | 1 cut(s) | 322 |
| AluBI | AGCT | 4 cut(s) | 147, 300, 542, 673 |
| AluI | AGCT | 4 cut(s) | 147, 300, 542, 673 |
| Alw26I | GTCTC | 2 cut(s) | 451, 515 |
| AlwI | GGATC | 2 cut(s) | 119, 132 |
| AseI | ATTAAT | 1 cut(s) | 576 |
| Asp718I | GGTACC | 2 cut(s) | 179, 369 |
| AspS9I | GGNCC | 3 cut(s) | 437, 654, 662 |
| AsuHPI | GGTGA | 2 cut(s) | 107, 156 |
| AsuII | TTCGAA | 1 cut(s) | 104 |
| AvaII | GGWCC | 3 cut(s) | 437, 654, 662 |
| AxyI | CCTNAGG | 1 cut(s) | 658 |
| BamHI | GGATCC | 1 cut(s) | 124 |
| BanI | GGYRCC | 2 cut(s) | 179, 369 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 268, 300, 335, 367 |
| BbrPI | CACGTG | 1 cut(s) | 619 |
| BccI | CCATC | 3 cut(s) | 92, 259, 391 |
| BcoDI | GTCTC | 2 cut(s) | 451, 515 |
| BcuI | ACTAGT | 1 cut(s) | 322 |
| BfaI | CTAG | 2 cut(s) | 236, 323 |
| BfmI | CTRYAG | 1 cut(s) | 674 |
| BglII | AGATCT | 1 cut(s) | 108 |
| BisI | GCNGC | 1 cut(s) | 305 |
| BlsI | GCNGC | 1 cut(s) | 306 |
| Bme18I | GGWCC | 3 cut(s) | 437, 654, 662 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 660 |
| BmgT120I | GGNCC | 3 cut(s) | 437, 654, 662 |
| BmiI | GGNNCC | 4 cut(s) | 126, 181, 371, 438 |
| BmsI | GCATC | 3 cut(s) | 35, 202, 591 |
| BpmI | CTGGAG | 1 cut(s) | 475 |
| Bpu14I | TTCGAA | 1 cut(s) | 104 |
| BsaAI | YACGTR | 1 cut(s) | 619 |
| BsaHI | GRCGYC | 1 cut(s) | 508 |
| BsaJI | CCNNGG | 3 cut(s) | 128, 171, 183 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 120, 121, 189, 397 |
| Bse1I | ACTGG | 3 cut(s) | 194, 458, 613 |
| Bse21I | CCTNAGG | 1 cut(s) | 658 |
| BseDI | CCNNGG | 3 cut(s) | 128, 171, 183 |
| BseGI | GGATG | 1 cut(s) | 409 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 120, 121, 189, 397 |
| BseMII | CTCAG | 1 cut(s) | 414 |
| BseNI | ACTGG | 3 cut(s) | 194, 458, 613 |
| BseYI | CCCAGC | 1 cut(s) | 143 |
| BshNI | GGYRCC | 2 cut(s) | 179, 369 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 120, 121, 189, 397 |
| BsmAI | GTCTC | 2 cut(s) | 451, 515 |
| BsmBI | CGTCTC | 1 cut(s) | 515 |
| BsmI | GAATGC | 1 cut(s) | 618 |
| Bsp119I | TTCGAA | 1 cut(s) | 104 |
| Bsp143I | GATC | 2 cut(s) | 108, 124 |
| Bsp19I | CCATGG | 2 cut(s) | 128, 171 |
| BspACI | CCGC | 2 cut(s) | 40, 304 |
| BspCNI | CTCAG | 1 cut(s) | 415 |
| BspLI | GGNNCC | 4 cut(s) | 126, 181, 371, 438 |
| BspPI | GGATC | 2 cut(s) | 119, 132 |
| BspT104I | TTCGAA | 1 cut(s) | 104 |
| BspT107I | GGYRCC | 2 cut(s) | 179, 369 |
| BsrI | ACTGG | 3 cut(s) | 194, 458, 613 |
| BssECI | CCNNGG | 3 cut(s) | 128, 171, 183 |
| BssMI | GATC | 2 cut(s) | 108, 124 |
| BssNI | GRCGYC | 1 cut(s) | 508 |
| BssT1I | CCWWGG | 2 cut(s) | 128, 171 |
| Bst6I | CTCTTC | 1 cut(s) | 555 |
| BstACI | GRCGYC | 1 cut(s) | 508 |
| BstBAI | YACGTR | 1 cut(s) | 619 |
| BstBI | TTCGAA | 1 cut(s) | 104 |
| BstC8I | GCNNGC | 2 cut(s) | 302, 309 |
| BstDEI | CTNAG | 3 cut(s) | 9, 423, 658 |
| BstDSI | CCRYGG | 2 cut(s) | 128, 171 |
| BstF5I | GGATG | 1 cut(s) | 409 |
| BstKTI | GATC | 2 cut(s) | 111, 127 |
| BstMAI | GTCTC | 2 cut(s) | 451, 515 |
| BstMBI | GATC | 2 cut(s) | 108, 124 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 514 |
| BstNSI | RCATGY | 1 cut(s) | 311 |
| BstSFI | CTRYAG | 1 cut(s) | 674 |
| BstX2I | RGATCY | 2 cut(s) | 108, 124 |
| BstYI | RGATCY | 2 cut(s) | 108, 124 |
| Bsu36I | CCTNAGG | 1 cut(s) | 658 |
| BtgI | CCRYGG | 2 cut(s) | 128, 171 |
| BtsCI | GGATG | 1 cut(s) | 409 |
| Cac8I | GCNNGC | 2 cut(s) | 302, 309 |
| Cfr13I | GGNCC | 3 cut(s) | 437, 654, 662 |
| CseI | GACGC | 2 cut(s) | 434, 497 |
| Csp6I | GTAC | 3 cut(s) | 180, 352, 370 |
| CviAII | CATG | 5 cut(s) | 129, 172, 308, 374, 518 |
| CviJI | RGCY | 8 cut(s) | 8, 53, 133, 147, 300, 410, 542, 673 |
| CviKI_1 | RGCY | 8 cut(s) | 8, 53, 133, 147, 300, 410, 542, 673 |
| CviQI | GTAC | 3 cut(s) | 180, 352, 370 |
| DdeI | CTNAG | 3 cut(s) | 9, 423, 658 |
| DpnI | GATC | 2 cut(s) | 110, 126 |
| DpnII | GATC | 2 cut(s) | 108, 124 |
| DriI | GACNNNNNGTC | 1 cut(s) | 660 |
| Eam1104I | CTCTTC | 1 cut(s) | 555 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 660 |
| EarI | CTCTTC | 1 cut(s) | 555 |
| EciI | GGCGGA | 1 cut(s) | 55 |
| Eco130I | CCWWGG | 2 cut(s) | 128, 171 |
| Eco47I | GGWCC | 3 cut(s) | 437, 654, 662 |
| Eco57I | CTGAAG | 1 cut(s) | 413 |
| Eco72I | CACGTG | 1 cut(s) | 619 |
| Eco81I | CCTNAGG | 1 cut(s) | 658 |
| EcoO109I | RGGNCCY | 2 cut(s) | 437, 662 |
| EcoT14I | CCWWGG | 2 cut(s) | 128, 171 |
| ErhI | CCWWGG | 2 cut(s) | 128, 171 |
| Esp3I | CGTCTC | 1 cut(s) | 515 |
| FaeI | CATG | 5 cut(s) | 132, 175, 311, 377, 521 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 526, 558 |
| FatI | CATG | 5 cut(s) | 128, 171, 307, 373, 517 |
| Fnu4HI | GCNGC | 1 cut(s) | 305 |
| FokI | GGATG | 1 cut(s) | 416 |
| Fsp4HI | GCNGC | 1 cut(s) | 305 |
| FspBI | CTAG | 2 cut(s) | 236, 323 |
| GluI | GCNGC | 1 cut(s) | 305 |
| GsaI | CCCAGC | 1 cut(s) | 147 |
| GsuI | CTGGAG | 1 cut(s) | 475 |
| HgaI | GACGC | 2 cut(s) | 434, 497 |
| Hin1I | GRCGYC | 1 cut(s) | 508 |
| Hin1II | CATG | 5 cut(s) | 132, 175, 311, 377, 521 |
| HinfI | GANTC | 1 cut(s) | 522 |
| HphI | GGTGA | 2 cut(s) | 107, 156 |
| Hpy188I | TCNGA | 1 cut(s) | 424 |
| Hpy188III | TCNNGA | 2 cut(s) | 361, 466 |
| HpyAV | CCTTC | 5 cut(s) | 13, 170, 187, 337, 536 |
| HpyCH4IV | ACGT | 2 cut(s) | 416, 618 |
| HpyCH4V | TGCA | 7 cut(s) | 26, 215, 311, 517, 582, 616, 643 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 514 |
| HpyF3I | CTNAG | 3 cut(s) | 9, 423, 658 |
| HpySE526I | ACGT | 2 cut(s) | 416, 618 |
| Hsp92I | GRCGYC | 1 cut(s) | 508 |
| Hsp92II | CATG | 5 cut(s) | 132, 175, 311, 377, 521 |
| KpnI | GGTACC | 2 cut(s) | 183, 373 |
| Kzo9I | GATC | 2 cut(s) | 108, 124 |
| LmnI | GCTCC | 1 cut(s) | 42 |
| LpnPI | CCDG | 9 cut(s) | 39, 74, 128, 157, 175, 404, 439, 451, 594 |
| LweI | GCATC | 3 cut(s) | 35, 202, 591 |
| MaeI | CTAG | 2 cut(s) | 236, 323 |
| MaeII | ACGT | 2 cut(s) | 416, 618 |
| MaeIII | GTNAC | 1 cut(s) | 231 |
| MalI | GATC | 2 cut(s) | 110, 126 |
| MboI | GATC | 2 cut(s) | 108, 124 |
| MboII | GAAGA | 3 cut(s) | 118, 406, 542 |
| MflI | RGATCY | 2 cut(s) | 108, 124 |
| MluCI | AATT | 5 cut(s) | 251, 279, 385, 475, 577 |
| MlyI | GAGTC | 1 cut(s) | 531 |
| MmeI | TCCRAC | 1 cut(s) | 554 |
| MnlI | CCTC | 7 cut(s) | 63, 114, 147, 178, 262, 418, 492 |
| MseI | TTAA | 2 cut(s) | 14, 576 |
| MslI | CAYNNNNRTG | 1 cut(s) | 34 |
| Mva1269I | GAATGC | 1 cut(s) | 618 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 514 |
| NcoI | CCATGG | 2 cut(s) | 128, 171 |
| NdeII | GATC | 2 cut(s) | 108, 124 |
| NlaIII | CATG | 5 cut(s) | 132, 175, 311, 377, 521 |
| NlaIV | GGNNCC | 4 cut(s) | 126, 181, 371, 438 |
| NspI | RCATGY | 1 cut(s) | 311 |
| NspV | TTCGAA | 1 cut(s) | 104 |
| PaeI | GCATGC | 1 cut(s) | 311 |
| PctI | GAATGC | 1 cut(s) | 618 |
| PkrI | GCNGC | 1 cut(s) | 306 |
| PleI | GAGTC | 1 cut(s) | 530 |
| PmaCI | CACGTG | 1 cut(s) | 619 |
| PmlI | CACGTG | 1 cut(s) | 619 |
| PpsI | GAGTC | 1 cut(s) | 530 |
| Ppu21I | YACGTR | 1 cut(s) | 619 |
| PpuMI | RGGWCCY | 2 cut(s) | 437, 662 |
| PshBI | ATTAAT | 1 cut(s) | 576 |
| Psp5II | RGGWCCY | 2 cut(s) | 437, 662 |
| PspCI | CACGTG | 1 cut(s) | 619 |
| PspFI | CCCAGC | 1 cut(s) | 143 |
| PspN4I | GGNNCC | 4 cut(s) | 126, 181, 371, 438 |
| PspPI | GGNCC | 3 cut(s) | 437, 654, 662 |
| PspPPI | RGGWCCY | 2 cut(s) | 437, 662 |
| PsuI | RGATCY | 2 cut(s) | 108, 124 |
| RsaI | GTAC | 3 cut(s) | 181, 353, 371 |
| RsaNI | GTAC | 3 cut(s) | 180, 352, 370 |
| RseI | CAYNNNNRTG | 1 cut(s) | 34 |
| SaqAI | TTAA | 2 cut(s) | 14, 576 |
| SatI | GCNGC | 1 cut(s) | 305 |
| Sau3AI | GATC | 2 cut(s) | 108, 124 |
| Sau96I | GGNCC | 3 cut(s) | 437, 654, 662 |
| SchI | GAGTC | 1 cut(s) | 531 |
| SfaNI | GCATC | 3 cut(s) | 35, 202, 591 |
| SfcI | CTRYAG | 1 cut(s) | 674 |
| SfuI | TTCGAA | 1 cut(s) | 104 |
| SinI | GGWCC | 3 cut(s) | 437, 654, 662 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 34 |
| SpeI | ACTAGT | 1 cut(s) | 322 |
| SphI | GCATGC | 1 cut(s) | 311 |
| Sse9I | AATT | 5 cut(s) | 251, 279, 385, 475, 577 |
| SsiI | CCGC | 2 cut(s) | 40, 304 |
| SspMI | CTAG | 2 cut(s) | 236, 323 |
| StyI | CCWWGG | 2 cut(s) | 128, 171 |
| TaiI | ACGT | 2 cut(s) | 419, 621 |
| TaqI | TCGA | 1 cut(s) | 104 |
| TasI | AATT | 5 cut(s) | 251, 279, 385, 475, 577 |
| TatI | WGTACW | 1 cut(s) | 351 |
| TauI | GCSGC | 1 cut(s) | 307 |
| Tru1I | TTAA | 2 cut(s) | 14, 576 |
| Tru9I | TTAA | 2 cut(s) | 14, 576 |
| TspDTI | ATGAA | 2 cut(s) | 260, 264 |
| TspGWI | ACGGA | 1 cut(s) | 329 |
| VpaK11BI | GGWCC | 3 cut(s) | 437, 654, 662 |
| VspI | ATTAAT | 1 cut(s) | 576 |
| XceI | RCATGY | 1 cut(s) | 311 |
| XspI | CTAG | 2 cut(s) | 236, 323 |