Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 870 |
| AciI | CCGC | 1 cut(s) | 743 |
| AclWI | GGATC | 2 cut(s) | 193, 520 |
| AcoI | YGGCCR | 1 cut(s) | 1437 |
| AcsI | RAATTY | 4 cut(s) | 6, 212, 268, 804 |
| AcuI | CTGAAG | 1 cut(s) | 367 |
| AdeI | CACNNNGTG | 1 cut(s) | 362 |
| AfaI | GTAC | 3 cut(s) | 677, 1191, 1342 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 253 |
| AflIII | ACRYGT | 1 cut(s) | 356 |
| AgsI | TTSAA | 7 cut(s) | 231, 316, 466, 479, 1019, 1310, 1389 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1126, 1360 |
| AjiI | CACGTC | 1 cut(s) | 359 |
| AjnI | CCWGG | 3 cut(s) | 251, 671, 1381 |
| AleI | CACNNNNGTG | 1 cut(s) | 1115 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 691, 723 |
| Alw21I | GWGCWC | 1 cut(s) | 198 |
| Alw26I | GTCTC | 5 cut(s) | 303, 347, 905, 1134, 1292 |
| Alw44I | GTGCAC | 1 cut(s) | 194 |
| AlwI | GGATC | 2 cut(s) | 193, 520 |
| Ama87I | CYCGRG | 1 cut(s) | 1330 |
| AoxI | GGCC | 3 cut(s) | 762, 1437, 1446 |
| ApaLI | GTGCAC | 1 cut(s) | 194 |
| ApeKI | GCWGC | 4 cut(s) | 376, 1090, 1167, 1220 |
| ApoI | RAATTY | 4 cut(s) | 6, 212, 268, 804 |
| AspS9I | GGNCC | 2 cut(s) | 431, 763 |
| AsuHPI | GGTGA | 2 cut(s) | 1043, 1309 |
| AsuII | TTCGAA | 1 cut(s) | 1275 |
| AvaI | CYCGRG | 1 cut(s) | 1330 |
| AvaII | GGWCC | 1 cut(s) | 431 |
| BaeGI | GKGCMC | 1 cut(s) | 198 |
| BalI | TGGCCA | 1 cut(s) | 1439 |
| Bbv12I | GWGCWC | 1 cut(s) | 198 |
| BbvCI | CCTCAGC | 1 cut(s) | 1059 |
| BbvI | GCAGC | 4 cut(s) | 388, 1102, 1154, 1232 |
| BccI | CCATC | 4 cut(s) | 176, 771, 785, 1061 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1082, 1116 |
| BciT130I | CCWGG | 3 cut(s) | 253, 673, 1383 |
| BcoDI | GTCTC | 5 cut(s) | 303, 347, 905, 1134, 1292 |
| BfaI | CTAG | 4 cut(s) | 11, 419, 1064, 1474 |
| BfmI | CTRYAG | 1 cut(s) | 61 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1445 |
| BisI | GCNGC | 4 cut(s) | 377, 1091, 1168, 1221 |
| BlsI | GCNGC | 4 cut(s) | 378, 1092, 1169, 1222 |
| Bme1390I | CCNGG | 3 cut(s) | 253, 673, 1383 |
| Bme18I | GGWCC | 1 cut(s) | 431 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1126, 1360 |
| BmeT110I | CYCGRG | 1 cut(s) | 1330 |
| BmgBI | CACGTC | 1 cut(s) | 359 |
| BmgT120I | GGNCC | 2 cut(s) | 431, 763 |
| BmrFI | CCNGG | 3 cut(s) | 253, 673, 1383 |
| BmsI | GCATC | 4 cut(s) | 160, 363, 379, 1077 |
| BpmI | CTGGAG | 2 cut(s) | 220, 476 |
| Bpu10I | CCTNAGC | 3 cut(s) | 263, 540, 1059 |
| Bpu14I | TTCGAA | 1 cut(s) | 1275 |
| BpuEI | CTTGAG | 1 cut(s) | 194 |
| Bsa29I | ATCGAT | 1 cut(s) | 159 |
| BsaJI | CCNNGG | 4 cut(s) | 25, 111, 252, 293 |
| BsaWI | WCCGGW | 1 cut(s) | 1264 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 253 |
| Bse1I | ACTGG | 3 cut(s) | 203, 459, 718 |
| Bse3DI | GCAATG | 1 cut(s) | 1251 |
| BseBI | CCWGG | 3 cut(s) | 253, 673, 1383 |
| BseCI | ATCGAT | 1 cut(s) | 159 |
| BseDI | CCNNGG | 4 cut(s) | 25, 111, 252, 293 |
| BseGI | GGATG | 6 cut(s) | 121, 223, 394, 689, 982, 1309 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 253 |
| BseMI | GCAATG | 1 cut(s) | 1251 |
| BseMII | CTCAG | 5 cut(s) | 327, 409, 554, 1073, 1373 |
| BseNI | ACTGG | 3 cut(s) | 203, 459, 718 |
| BseRI | GAGGAG | 1 cut(s) | 363 |
| BseSI | GKGCMC | 1 cut(s) | 198 |
| BseXI | GCAGC | 4 cut(s) | 388, 1102, 1154, 1232 |
| BseYI | CCCAGC | 1 cut(s) | 1147 |
| BsgI | GTGCAG | 1 cut(s) | 916 |
| BshFI | GGCC | 3 cut(s) | 764, 1439, 1448 |
| BshVI | ATCGAT | 1 cut(s) | 159 |
| BsiHKAI | GWGCWC | 1 cut(s) | 198 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1330 |
| BsiSI | CCGG | 1 cut(s) | 1265 |
| BslFI | GGGAC | 1 cut(s) | 465 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 253 |
| BsmAI | GTCTC | 5 cut(s) | 303, 347, 905, 1134, 1292 |
| BsmFI | GGGAC | 1 cut(s) | 465 |
| BsnI | GGCC | 3 cut(s) | 764, 1439, 1448 |
| BsoBI | CYCGRG | 1 cut(s) | 1330 |
| Bsp119I | TTCGAA | 1 cut(s) | 1275 |
| Bsp1286I | GDGCHC | 1 cut(s) | 198 |
| Bsp1407I | TGTACA | 1 cut(s) | 1189 |
| Bsp143I | GATC | 3 cut(s) | 185, 277, 525 |
| BspACI | CCGC | 1 cut(s) | 743 |
| BspANI | GGCC | 3 cut(s) | 764, 1439, 1448 |
| BspCNI | CTCAG | 5 cut(s) | 328, 408, 553, 1072, 1372 |
| BspDI | ATCGAT | 1 cut(s) | 159 |
| BspHI | TCATGA | 1 cut(s) | 1408 |
| BspMAI | CTGCAG | 1 cut(s) | 65 |
| BspPI | GGATC | 2 cut(s) | 193, 520 |
| BspQI | GCTCTTC | 1 cut(s) | 386 |
| BspT104I | TTCGAA | 1 cut(s) | 1275 |
| BsrDI | GCAATG | 1 cut(s) | 1251 |
| BsrGI | TGTACA | 1 cut(s) | 1189 |
| BsrI | ACTGG | 3 cut(s) | 203, 459, 718 |
| BssECI | CCNNGG | 4 cut(s) | 25, 111, 252, 293 |
| BssMI | GATC | 3 cut(s) | 185, 277, 525 |
| BssT1I | CCWWGG | 2 cut(s) | 111, 293 |
| Bst2UI | CCWGG | 3 cut(s) | 253, 673, 1383 |
| Bst4CI | ACNGT | 5 cut(s) | 221, 757, 844, 916, 1286 |
| Bst6I | CTCTTC | 1 cut(s) | 386 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 928 |
| BstAUI | TGTACA | 1 cut(s) | 1189 |
| BstBI | TTCGAA | 1 cut(s) | 1275 |
| BstC8I | GCNNGC | 2 cut(s) | 54, 1234 |
| BstEII | GGTNACC | 1 cut(s) | 1049 |
| BstF5I | GGATG | 6 cut(s) | 121, 223, 394, 689, 982, 1309 |
| BstKTI | GATC | 3 cut(s) | 188, 280, 528 |
| BstMAI | GTCTC | 5 cut(s) | 303, 347, 905, 1134, 1292 |
| BstMBI | GATC | 3 cut(s) | 185, 277, 525 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 53, 202, 818, 894, 928, 1220, 1229, 1445 |
| BstNI | CCWGG | 3 cut(s) | 253, 673, 1383 |
| BstNSI | RCATGY | 2 cut(s) | 926, 1236 |
| BstPI | GGTNACC | 1 cut(s) | 1049 |
| BstSCI | CCNGG | 3 cut(s) | 251, 671, 1381 |
| BstSFI | CTRYAG | 1 cut(s) | 61 |
| BstSLI | GKGCMC | 1 cut(s) | 198 |
| BstV1I | GCAGC | 4 cut(s) | 388, 1102, 1154, 1232 |
| Bsu15I | ATCGAT | 1 cut(s) | 159 |
| BsuRI | GGCC | 3 cut(s) | 764, 1439, 1448 |
| BsuTUI | ATCGAT | 1 cut(s) | 159 |
| BtrI | CACGTC | 1 cut(s) | 359 |
| BtsCI | GGATG | 6 cut(s) | 121, 223, 394, 689, 982, 1309 |
| BtsIMutI | CAGTG | 3 cut(s) | 196, 762, 921 |
| Cac8I | GCNNGC | 2 cut(s) | 54, 1234 |
| CciI | TCATGA | 1 cut(s) | 1408 |
| Cfr13I | GGNCC | 2 cut(s) | 431, 763 |
| ClaI | ATCGAT | 1 cut(s) | 159 |
| Csp6I | GTAC | 3 cut(s) | 676, 1190, 1341 |
| CviAII | CATG | 8 cut(s) | 15, 562, 809, 923, 1204, 1233, 1400, 1409 |
| CviQI | GTAC | 3 cut(s) | 676, 1190, 1341 |
| DpnI | GATC | 3 cut(s) | 187, 279, 527 |
| DpnII | GATC | 3 cut(s) | 185, 277, 525 |
| DraIII | CACNNNGTG | 1 cut(s) | 362 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1126, 1360 |
| EaeI | YGGCCR | 1 cut(s) | 1437 |
| Eam1104I | CTCTTC | 1 cut(s) | 386 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1126, 1360 |
| EarI | CTCTTC | 1 cut(s) | 386 |
| Eco130I | CCWWGG | 2 cut(s) | 111, 293 |
| Eco147I | AGGCCT | 1 cut(s) | 1448 |
| Eco32I | GATATC | 1 cut(s) | 520 |
| Eco47I | GGWCC | 1 cut(s) | 431 |
| Eco57I | CTGAAG | 1 cut(s) | 367 |
| Eco88I | CYCGRG | 1 cut(s) | 1330 |
| Eco91I | GGTNACC | 1 cut(s) | 1049 |
| EcoO65I | GGTNACC | 1 cut(s) | 1049 |
| EcoRII | CCWGG | 3 cut(s) | 251, 671, 1381 |
| EcoRV | GATATC | 1 cut(s) | 520 |
| EcoT14I | CCWWGG | 2 cut(s) | 111, 293 |
| ErhI | CCWWGG | 2 cut(s) | 111, 293 |
| FaeI | CATG | 8 cut(s) | 18, 565, 812, 926, 1207, 1236, 1403, 1412 |
| FaqI | GGGAC | 1 cut(s) | 465 |
| FatI | CATG | 8 cut(s) | 14, 561, 808, 922, 1203, 1232, 1399, 1408 |
| FauNDI | CATATG | 2 cut(s) | 1095, 1257 |
| FblI | GTMKAC | 1 cut(s) | 870 |
| Fnu4HI | GCNGC | 4 cut(s) | 377, 1091, 1168, 1221 |
| FokI | GGATG | 6 cut(s) | 128, 210, 401, 676, 989, 1316 |
| Fsp4HI | GCNGC | 4 cut(s) | 377, 1091, 1168, 1221 |
| FspBI | CTAG | 4 cut(s) | 11, 419, 1064, 1474 |
| GluI | GCNGC | 4 cut(s) | 377, 1091, 1168, 1221 |
| GsaI | CCCAGC | 1 cut(s) | 1151 |
| GsuI | CTGGAG | 2 cut(s) | 220, 476 |
| HaeIII | GGCC | 3 cut(s) | 764, 1439, 1448 |
| HapII | CCGG | 1 cut(s) | 1265 |
| Hin1II | CATG | 8 cut(s) | 18, 565, 812, 926, 1207, 1236, 1403, 1412 |
| HindIII | AAGCTT | 1 cut(s) | 819 |
| HpaII | CCGG | 1 cut(s) | 1265 |
| HphI | GGTGA | 2 cut(s) | 1043, 1309 |
| Hpy166II | GTNNAC | 5 cut(s) | 196, 441, 871, 1120, 1183 |
| Hpy188I | TCNGA | 6 cut(s) | 337, 372, 530, 970, 1126, 1139 |
| Hpy188III | TCNNGA | 6 cut(s) | 173, 362, 523, 641, 993, 1409 |
| Hpy8I | GTNNAC | 5 cut(s) | 196, 441, 871, 1120, 1183 |
| Hpy99I | CGWCG | 1 cut(s) | 363 |
| HpyAV | CCTTC | 7 cut(s) | 237, 442, 473, 561, 990, 1013, 1294 |
| HpyCH4III | ACNGT | 5 cut(s) | 221, 757, 844, 916, 1286 |
| HpyCH4IV | ACGT | 1 cut(s) | 358 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 53, 202, 818, 894, 928, 1220, 1229, 1445 |
| HpySE526I | ACGT | 1 cut(s) | 358 |
| Hsp92II | CATG | 8 cut(s) | 18, 565, 812, 926, 1207, 1236, 1403, 1412 |
| Kzo9I | GATC | 3 cut(s) | 185, 277, 525 |
| LguI | GCTCTTC | 1 cut(s) | 386 |
| LmnI | GCTCC | 3 cut(s) | 457, 506, 919 |
| Lsp1109I | GCAGC | 4 cut(s) | 388, 1102, 1154, 1232 |
| LweI | GCATC | 4 cut(s) | 160, 363, 379, 1077 |
| MaeI | CTAG | 4 cut(s) | 11, 419, 1064, 1474 |
| MaeII | ACGT | 1 cut(s) | 358 |
| MaeIII | GTNAC | 3 cut(s) | 127, 652, 1049 |
| MalI | GATC | 3 cut(s) | 187, 279, 527 |
| MboI | GATC | 3 cut(s) | 185, 277, 525 |
| MboII | GAAGA | 3 cut(s) | 373, 675, 1449 |
| MhlI | GDGCHC | 1 cut(s) | 198 |
| MlsI | TGGCCA | 1 cut(s) | 1439 |
| MluCI | AATT | 9 cut(s) | 6, 19, 212, 268, 494, 804, 1005, 1238, 1433 |
| MluNI | TGGCCA | 1 cut(s) | 1439 |
| MlyI | GAGTC | 5 cut(s) | 856, 1115, 1136, 1136, 1270 |
| MmeI | TCCRAC | 3 cut(s) | 602, 710, 766 |
| Mox20I | TGGCCA | 1 cut(s) | 1439 |
| MscI | TGGCCA | 1 cut(s) | 1439 |
| MseI | TTAA | 2 cut(s) | 801, 1073 |
| MslI | CAYNNNNRTG | 2 cut(s) | 159, 1115 |
| Msp20I | TGGCCA | 1 cut(s) | 1439 |
| MspI | CCGG | 1 cut(s) | 1265 |
| MspR9I | CCNGG | 3 cut(s) | 253, 673, 1383 |
| MvaI | CCWGG | 3 cut(s) | 253, 673, 1383 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 53, 202, 818, 894, 928, 1220, 1229, 1445 |
| NdeI | CATATG | 2 cut(s) | 1095, 1257 |
| NdeII | GATC | 3 cut(s) | 185, 277, 525 |
| NlaIII | CATG | 8 cut(s) | 18, 565, 812, 926, 1207, 1236, 1403, 1412 |
| NmeAIII | GCCGAG | 1 cut(s) | 50 |
| NmuCI | GTSAC | 1 cut(s) | 1049 |
| NspI | RCATGY | 2 cut(s) | 926, 1236 |
| NspV | TTCGAA | 1 cut(s) | 1275 |
| OliI | CACNNNNGTG | 1 cut(s) | 1115 |
| PaeI | GCATGC | 1 cut(s) | 1236 |
| PagI | TCATGA | 1 cut(s) | 1408 |
| PceI | AGGCCT | 1 cut(s) | 1448 |
| PciSI | GCTCTTC | 1 cut(s) | 386 |
| PfeI | GAWTC | 6 cut(s) | 30, 41, 121, 169, 644, 1099 |
| PkrI | GCNGC | 4 cut(s) | 378, 1092, 1169, 1222 |
| PleI | GAGTC | 5 cut(s) | 855, 1115, 1135, 1136, 1269 |
| PpsI | GAGTC | 5 cut(s) | 855, 1115, 1135, 1136, 1269 |
| Psp6I | CCWGG | 3 cut(s) | 251, 671, 1381 |
| PspEI | GGTNACC | 1 cut(s) | 1049 |
| PspFI | CCCAGC | 1 cut(s) | 1147 |
| PspGI | CCWGG | 3 cut(s) | 251, 671, 1381 |
| PspPI | GGNCC | 2 cut(s) | 431, 763 |
| PstI | CTGCAG | 1 cut(s) | 65 |
| RsaI | GTAC | 3 cut(s) | 677, 1191, 1342 |
| RsaNI | GTAC | 3 cut(s) | 676, 1190, 1341 |
| RseI | CAYNNNNRTG | 2 cut(s) | 159, 1115 |
| SapI | GCTCTTC | 1 cut(s) | 386 |
| SaqAI | TTAA | 2 cut(s) | 801, 1073 |
| SatI | GCNGC | 4 cut(s) | 377, 1091, 1168, 1221 |
| Sau3AI | GATC | 3 cut(s) | 185, 277, 525 |
| Sau96I | GGNCC | 2 cut(s) | 431, 763 |
| SchI | GAGTC | 5 cut(s) | 856, 1115, 1136, 1136, 1270 |
| ScrFI | CCNGG | 3 cut(s) | 253, 673, 1383 |
| SduI | GDGCHC | 1 cut(s) | 198 |
| SfaNI | GCATC | 4 cut(s) | 160, 363, 379, 1077 |
| SfcI | CTRYAG | 1 cut(s) | 61 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1445 |
| SfuI | TTCGAA | 1 cut(s) | 1275 |
| SinI | GGWCC | 1 cut(s) | 431 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 159, 1115 |
| SmlI | CTYRAG | 1 cut(s) | 173 |
| SmoI | CTYRAG | 1 cut(s) | 173 |
| SphI | GCATGC | 1 cut(s) | 1236 |
| Sse9I | AATT | 9 cut(s) | 6, 19, 212, 268, 494, 804, 1005, 1238, 1433 |
| SseBI | AGGCCT | 1 cut(s) | 1448 |
| SsiI | CCGC | 1 cut(s) | 743 |
| SspI | AATATT | 1 cut(s) | 1420 |
| SspMI | CTAG | 4 cut(s) | 11, 419, 1064, 1474 |
| StuI | AGGCCT | 1 cut(s) | 1448 |
| StyD4I | CCNGG | 3 cut(s) | 251, 671, 1381 |
| StyI | CCWWGG | 2 cut(s) | 111, 293 |
| TaaI | ACNGT | 5 cut(s) | 221, 757, 844, 916, 1286 |
| TaiI | ACGT | 1 cut(s) | 361 |
| TaqI | TCGA | 2 cut(s) | 159, 1275 |
| TaqII | GACCGA | 2 cut(s) | 419, 1092 |
| TasI | AATT | 9 cut(s) | 6, 19, 212, 268, 494, 804, 1005, 1238, 1433 |
| TatI | WGTACW | 1 cut(s) | 1189 |
| TfiI | GAWTC | 6 cut(s) | 30, 41, 121, 169, 644, 1099 |
| Tru1I | TTAA | 2 cut(s) | 801, 1073 |
| Tru9I | TTAA | 2 cut(s) | 801, 1073 |
| TscAI | CASTG | 3 cut(s) | 203, 762, 921 |
| TseFI | GTSAC | 1 cut(s) | 1049 |
| TseI | GCWGC | 4 cut(s) | 376, 1090, 1167, 1220 |
| Tsp45I | GTSAC | 1 cut(s) | 1049 |
| TspDTI | ATGAA | 4 cut(s) | 252, 797, 894, 1388 |
| TspRI | CASTG | 3 cut(s) | 203, 762, 921 |
| VneI | GTGCAC | 1 cut(s) | 194 |
| VpaK11BI | GGWCC | 1 cut(s) | 431 |
| XapI | RAATTY | 4 cut(s) | 6, 212, 268, 804 |
| XceI | RCATGY | 2 cut(s) | 926, 1236 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 441 |
| XmiI | GTMKAC | 1 cut(s) | 870 |
| XspI | CTAG | 4 cut(s) | 11, 419, 1064, 1474 |