ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Zn_ribbon_Dof | PF02701 | 54 - 111 | 6.6e-34 | Dof domain, zinc finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 516 |
| Acc65I | GGTACC | 1 cut(s) | 945 |
| AccB1I | GGYRCC | 1 cut(s) | 945 |
| AciI | CCGC | 1 cut(s) | 155 |
| AclWI | GGATC | 2 cut(s) | 748, 840 |
| AcsI | RAATTY | 2 cut(s) | 556, 855 |
| AcuI | CTGAAG | 1 cut(s) | 32 |
| AcyI | GRCGYC | 1 cut(s) | 921 |
| AfaI | GTAC | 4 cut(s) | 245, 269, 286, 947 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 101, 264, 308 |
| AgsI | TTSAA | 1 cut(s) | 561 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 88 |
| AluBI | AGCT | 3 cut(s) | 436, 605, 883 |
| AluI | AGCT | 3 cut(s) | 436, 605, 883 |
| Alw21I | GWGCWC | 1 cut(s) | 493 |
| Alw26I | GTCTC | 4 cut(s) | 78, 753, 894, 962 |
| AlwI | GGATC | 2 cut(s) | 748, 840 |
| AoxI | GGCC | 5 cut(s) | 125, 149, 572, 673, 992 |
| ApeKI | GCWGC | 1 cut(s) | 912 |
| ApoI | RAATTY | 2 cut(s) | 556, 855 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 782 |
| Asp718I | GGTACC | 1 cut(s) | 945 |
| AspA2I | CCTAGG | 2 cut(s) | 179, 239 |
| AspS9I | GGNCC | 5 cut(s) | 67, 126, 273, 448, 992 |
| AsuC2I | CCSGG | 1 cut(s) | 446 |
| AsuHPI | GGTGA | 3 cut(s) | 84, 662, 830 |
| AvaII | GGWCC | 3 cut(s) | 67, 273, 448 |
| AvrII | CCTAGG | 2 cut(s) | 179, 239 |
| BaeGI | GKGCMC | 1 cut(s) | 179 |
| BanI | GGYRCC | 1 cut(s) | 945 |
| BanII | GRGCYC | 2 cut(s) | 56, 694 |
| BauI | CACGAG | 1 cut(s) | 62 |
| BbsI | GAAGAC | 1 cut(s) | 399 |
| Bbv12I | GWGCWC | 1 cut(s) | 493 |
| BbvI | GCAGC | 1 cut(s) | 899 |
| BccI | CCATC | 5 cut(s) | 73, 393, 515, 849, 1003 |
| BclI | TGATCA | 1 cut(s) | 754 |
| BcnI | CCSGG | 1 cut(s) | 446 |
| BcoDI | GTCTC | 4 cut(s) | 78, 753, 894, 962 |
| BfaI | CTAG | 4 cut(s) | 180, 240, 621, 729 |
| BfmI | CTRYAG | 3 cut(s) | 223, 259, 606 |
| BfuAI | ACCTGC | 1 cut(s) | 516 |
| BisI | GCNGC | 1 cut(s) | 913 |
| BlnI | CCTAGG | 2 cut(s) | 179, 239 |
| BlsI | GCNGC | 1 cut(s) | 914 |
| Bme1390I | CCNGG | 1 cut(s) | 446 |
| Bme18I | GGWCC | 3 cut(s) | 67, 273, 448 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 88 |
| BmgT120I | GGNCC | 5 cut(s) | 67, 126, 273, 448, 992 |
| BmiI | GGNNCC | 1 cut(s) | 947 |
| BmrFI | CCNGG | 1 cut(s) | 446 |
| BmsI | GCATC | 3 cut(s) | 444, 471, 475 |
| BpiI | GAAGAC | 1 cut(s) | 399 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 273, 305 |
| BpmI | CTGGAG | 1 cut(s) | 416 |
| BpuEI | CTTGAG | 5 cut(s) | 106, 155, 477, 572, 914 |
| BpuMI | CCSGG | 1 cut(s) | 446 |
| BsaHI | GRCGYC | 1 cut(s) | 921 |
| BsaI | GGTCTC | 1 cut(s) | 962 |
| BsaJI | CCNNGG | 5 cut(s) | 179, 239, 276, 715, 907 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 353, 383, 581, 611, 634, 664 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 101, 264, 308 |
| Bse1I | ACTGG | 5 cut(s) | 47, 70, 275, 565, 705 |
| BseDI | CCNNGG | 5 cut(s) | 179, 239, 276, 715, 907 |
| BseGI | GGATG | 2 cut(s) | 526, 995 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 101, 264, 308 |
| BseMII | CTCAG | 3 cut(s) | 248, 304, 930 |
| BseNI | ACTGG | 5 cut(s) | 47, 70, 275, 565, 705 |
| BseSI | GKGCMC | 1 cut(s) | 179 |
| BseXI | GCAGC | 1 cut(s) | 899 |
| BshFI | GGCC | 5 cut(s) | 127, 151, 574, 675, 994 |
| BshNI | GGYRCC | 1 cut(s) | 945 |
| BsiHKAI | GWGCWC | 1 cut(s) | 493 |
| BsiSI | CCGG | 3 cut(s) | 102, 446, 924 |
| BslFI | GGGAC | 2 cut(s) | 351, 511 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 101, 264, 308 |
| BsmAI | GTCTC | 4 cut(s) | 78, 753, 894, 962 |
| BsmFI | GGGAC | 2 cut(s) | 351, 511 |
| BsmI | GAATGC | 1 cut(s) | 622 |
| BsnI | GGCC | 5 cut(s) | 127, 151, 574, 675, 994 |
| Bso31I | GGTCTC | 1 cut(s) | 962 |
| Bsp1286I | GDGCHC | 4 cut(s) | 56, 179, 493, 694 |
| Bsp143I | GATC | 5 cut(s) | 358, 427, 740, 754, 832 |
| Bsp19I | CCATGG | 1 cut(s) | 715 |
| BspACI | CCGC | 1 cut(s) | 155 |
| BspANI | GGCC | 5 cut(s) | 127, 151, 574, 675, 994 |
| BspCNI | CTCAG | 3 cut(s) | 247, 303, 929 |
| BspHI | TCATGA | 1 cut(s) | 859 |
| BspLI | GGNNCC | 1 cut(s) | 947 |
| BspMI | ACCTGC | 1 cut(s) | 516 |
| BspPI | GGATC | 2 cut(s) | 748, 840 |
| BspT107I | GGYRCC | 1 cut(s) | 945 |
| BspTNI | GGTCTC | 1 cut(s) | 962 |
| BsrI | ACTGG | 5 cut(s) | 47, 70, 275, 565, 705 |
| BssECI | CCNNGG | 5 cut(s) | 179, 239, 276, 715, 907 |
| BssMI | GATC | 5 cut(s) | 358, 427, 740, 754, 832 |
| BssNI | GRCGYC | 1 cut(s) | 921 |
| BssSI | CACGAG | 1 cut(s) | 62 |
| BssT1I | CCWWGG | 5 cut(s) | 179, 239, 276, 715, 907 |
| Bst2BI | CACGAG | 1 cut(s) | 62 |
| Bst4CI | ACNGT | 2 cut(s) | 365, 545 |
| Bst6I | CTCTTC | 1 cut(s) | 91 |
| BstACI | GRCGYC | 1 cut(s) | 921 |
| BstDEI | CTNAG | 5 cut(s) | 234, 290, 677, 879, 916 |
| BstDSI | CCRYGG | 1 cut(s) | 715 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 262 |
| BstF5I | GGATG | 2 cut(s) | 526, 995 |
| BstKTI | GATC | 5 cut(s) | 361, 430, 743, 757, 835 |
| BstMAI | GTCTC | 4 cut(s) | 78, 753, 894, 962 |
| BstMBI | GATC | 5 cut(s) | 358, 427, 740, 754, 832 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 183, 463 |
| BstNSI | RCATGY | 1 cut(s) | 120 |
| BstSCI | CCNGG | 1 cut(s) | 444 |
| BstSFI | CTRYAG | 3 cut(s) | 223, 259, 606 |
| BstSLI | GKGCMC | 1 cut(s) | 179 |
| BstV1I | GCAGC | 1 cut(s) | 899 |
| BstV2I | GAAGAC | 1 cut(s) | 399 |
| BsuRI | GGCC | 5 cut(s) | 127, 151, 574, 675, 994 |
| BtgI | CCRYGG | 1 cut(s) | 715 |
| BtsCI | GGATG | 2 cut(s) | 526, 995 |
| BveI | ACCTGC | 1 cut(s) | 516 |
| CciI | TCATGA | 1 cut(s) | 859 |
| Cfr13I | GGNCC | 5 cut(s) | 67, 126, 273, 448, 992 |
| CseI | GACGC | 1 cut(s) | 929 |
| Csp6I | GTAC | 4 cut(s) | 244, 268, 285, 946 |
| CviQI | GTAC | 4 cut(s) | 244, 268, 285, 946 |
| DdeI | CTNAG | 5 cut(s) | 234, 290, 677, 879, 916 |
| DpnI | GATC | 5 cut(s) | 360, 429, 742, 756, 834 |
| DpnII | GATC | 5 cut(s) | 358, 427, 740, 754, 832 |
| DriI | GACNNNNNGTC | 1 cut(s) | 88 |
| Eam1104I | CTCTTC | 1 cut(s) | 91 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 88 |
| EarI | CTCTTC | 1 cut(s) | 91 |
| Eco130I | CCWWGG | 5 cut(s) | 179, 239, 276, 715, 907 |
| Eco24I | GRGCYC | 2 cut(s) | 56, 694 |
| Eco31I | GGTCTC | 1 cut(s) | 962 |
| Eco47I | GGWCC | 3 cut(s) | 67, 273, 448 |
| Eco57I | CTGAAG | 1 cut(s) | 32 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 262 |
| EcoO109I | RGGNCCY | 1 cut(s) | 126 |
| EcoRI | GAATTC | 1 cut(s) | 556 |
| EcoT14I | CCWWGG | 5 cut(s) | 179, 239, 276, 715, 907 |
| EcoT38I | GRGCYC | 2 cut(s) | 56, 694 |
| ErhI | CCWWGG | 5 cut(s) | 179, 239, 276, 715, 907 |
| FaqI | GGGAC | 2 cut(s) | 351, 511 |
| FauNDI | CATATG | 2 cut(s) | 817, 940 |
| FbaI | TGATCA | 1 cut(s) | 754 |
| Fnu4HI | GCNGC | 1 cut(s) | 913 |
| FokI | GGATG | 2 cut(s) | 533, 982 |
| FriOI | GRGCYC | 2 cut(s) | 56, 694 |
| Fsp4HI | GCNGC | 1 cut(s) | 913 |
| FspBI | CTAG | 4 cut(s) | 180, 240, 621, 729 |
| GluI | GCNGC | 1 cut(s) | 913 |
| GsuI | CTGGAG | 1 cut(s) | 416 |
| HaeIII | GGCC | 5 cut(s) | 127, 151, 574, 675, 994 |
| HapII | CCGG | 3 cut(s) | 102, 446, 924 |
| HgaI | GACGC | 1 cut(s) | 929 |
| Hin1I | GRCGYC | 1 cut(s) | 921 |
| HinfI | GANTC | 6 cut(s) | 32, 58, 83, 188, 704, 932 |
| HpaII | CCGG | 3 cut(s) | 102, 446, 924 |
| HphI | GGTGA | 3 cut(s) | 84, 662, 830 |
| Hpy166II | GTNNAC | 1 cut(s) | 287 |
| Hpy188I | TCNGA | 6 cut(s) | 40, 78, 293, 471, 919, 962 |
| Hpy188III | TCNNGA | 4 cut(s) | 62, 752, 860, 893 |
| Hpy8I | GTNNAC | 1 cut(s) | 287 |
| Hpy99I | CGWCG | 1 cut(s) | 1006 |
| HpyAV | CCTTC | 3 cut(s) | 135, 258, 325 |
| HpyCH4III | ACNGT | 2 cut(s) | 365, 545 |
| HpyCH4V | TGCA | 3 cut(s) | 27, 252, 457 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 183, 463 |
| HpyF3I | CTNAG | 5 cut(s) | 234, 290, 677, 879, 916 |
| Hsp92I | GRCGYC | 1 cut(s) | 921 |
| KpnI | GGTACC | 1 cut(s) | 949 |
| Ksp22I | TGATCA | 1 cut(s) | 754 |
| Kzo9I | GATC | 5 cut(s) | 358, 427, 740, 754, 832 |
| Lsp1109I | GCAGC | 1 cut(s) | 899 |
| LweI | GCATC | 3 cut(s) | 444, 471, 475 |
| MaeI | CTAG | 4 cut(s) | 180, 240, 621, 729 |
| MaeIII | GTNAC | 2 cut(s) | 90, 533 |
| MalI | GATC | 5 cut(s) | 360, 429, 742, 756, 834 |
| MboI | GATC | 5 cut(s) | 358, 427, 740, 754, 832 |
| MboII | GAAGA | 4 cut(s) | 78, 368, 393, 399 |
| MfeI | CAATTG | 1 cut(s) | 576 |
| MhlI | GDGCHC | 4 cut(s) | 56, 179, 493, 694 |
| MluCI | AATT | 6 cut(s) | 10, 511, 556, 576, 781, 855 |
| MlyI | GAGTC | 2 cut(s) | 77, 182 |
| MmeI | TCCRAC | 1 cut(s) | 579 |
| MroXI | GAANNNNTTC | 1 cut(s) | 782 |
| MseI | TTAA | 3 cut(s) | 113, 540, 806 |
| MslI | CAYNNNNRTG | 1 cut(s) | 849 |
| MspI | CCGG | 3 cut(s) | 102, 446, 924 |
| MspR9I | CCNGG | 1 cut(s) | 446 |
| MunI | CAATTG | 1 cut(s) | 576 |
| Mva1269I | GAATGC | 1 cut(s) | 622 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 183, 463 |
| NciI | CCSGG | 1 cut(s) | 446 |
| NcoI | CCATGG | 1 cut(s) | 715 |
| NdeI | CATATG | 2 cut(s) | 817, 940 |
| NdeII | GATC | 5 cut(s) | 358, 427, 740, 754, 832 |
| NlaIV | GGNNCC | 1 cut(s) | 947 |
| NmuCI | GTSAC | 1 cut(s) | 90 |
| NspI | RCATGY | 1 cut(s) | 120 |
| PagI | TCATGA | 1 cut(s) | 859 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 401 |
| PctI | GAATGC | 1 cut(s) | 622 |
| PdmI | GAANNNNTTC | 1 cut(s) | 782 |
| PfeI | GAWTC | 4 cut(s) | 32, 58, 704, 932 |
| PfoI | TCCNGGA | 1 cut(s) | 444 |
| PkrI | GCNGC | 1 cut(s) | 914 |
| PleI | GAGTC | 2 cut(s) | 77, 182 |
| PpsI | GAGTC | 2 cut(s) | 77, 182 |
| PspN4I | GGNNCC | 1 cut(s) | 947 |
| PspPI | GGNCC | 5 cut(s) | 67, 126, 273, 448, 992 |
| RsaI | GTAC | 4 cut(s) | 245, 269, 286, 947 |
| RsaNI | GTAC | 4 cut(s) | 244, 268, 285, 946 |
| RseI | CAYNNNNRTG | 1 cut(s) | 849 |
| SaqAI | TTAA | 3 cut(s) | 113, 540, 806 |
| SatI | GCNGC | 1 cut(s) | 913 |
| Sau3AI | GATC | 5 cut(s) | 358, 427, 740, 754, 832 |
| Sau96I | GGNCC | 5 cut(s) | 67, 126, 273, 448, 992 |
| SchI | GAGTC | 2 cut(s) | 77, 182 |
| ScrFI | CCNGG | 1 cut(s) | 446 |
| SduI | GDGCHC | 4 cut(s) | 56, 179, 493, 694 |
| SfaNI | GCATC | 3 cut(s) | 444, 471, 475 |
| SfcI | CTRYAG | 3 cut(s) | 223, 259, 606 |
| SinI | GGWCC | 3 cut(s) | 67, 273, 448 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 849 |
| SmlI | CTYRAG | 5 cut(s) | 121, 170, 492, 551, 893 |
| SmoI | CTYRAG | 5 cut(s) | 121, 170, 492, 551, 893 |
| Sse9I | AATT | 6 cut(s) | 10, 511, 556, 576, 781, 855 |
| SsiI | CCGC | 1 cut(s) | 155 |
| SspMI | CTAG | 4 cut(s) | 180, 240, 621, 729 |
| StyD4I | CCNGG | 1 cut(s) | 444 |
| StyI | CCWWGG | 5 cut(s) | 179, 239, 276, 715, 907 |
| TaaI | ACNGT | 2 cut(s) | 365, 545 |
| TaqI | TCGA | 1 cut(s) | 56 |
| TasI | AATT | 6 cut(s) | 10, 511, 556, 576, 781, 855 |
| TfiI | GAWTC | 4 cut(s) | 32, 58, 704, 932 |
| Tru1I | TTAA | 3 cut(s) | 113, 540, 806 |
| Tru9I | TTAA | 3 cut(s) | 113, 540, 806 |
| TseFI | GTSAC | 1 cut(s) | 90 |
| TseI | GCWGC | 1 cut(s) | 912 |
| Tsp45I | GTSAC | 1 cut(s) | 90 |
| VpaK11BI | GGWCC | 3 cut(s) | 67, 273, 448 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 262 |
| XapI | RAATTY | 2 cut(s) | 556, 855 |
| XceI | RCATGY | 1 cut(s) | 120 |
| XmaJI | CCTAGG | 2 cut(s) | 179, 239 |
| XmnI | GAANNNNTTC | 1 cut(s) | 782 |
| XspI | CTAG | 4 cut(s) | 180, 240, 621, 729 |