ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1117 |
| AccBSI | CCGCTC | 1 cut(s) | 346 |
| AccII | CGCG | 3 cut(s) | 46, 51, 61 |
| AccIII | TCCGGA | 2 cut(s) | 112, 817 |
| AclWI | GGATC | 1 cut(s) | 1081 |
| AcoI | YGGCCR | 2 cut(s) | 581, 699 |
| AcsI | RAATTY | 3 cut(s) | 545, 750, 1097 |
| AcuI | CTGAAG | 1 cut(s) | 147 |
| AfaI | GTAC | 2 cut(s) | 454, 1122 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 976 |
| AgeI | ACCGGT | 1 cut(s) | 682 |
| AgsI | TTSAA | 2 cut(s) | 260, 392 |
| AjnI | CCWGG | 1 cut(s) | 1152 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 603, 635 |
| Alw21I | GWGCWC | 1 cut(s) | 592 |
| AlwI | GGATC | 1 cut(s) | 1081 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1175 |
| Aor13HI | TCCGGA | 2 cut(s) | 112, 817 |
| AoxI | GGCC | 2 cut(s) | 581, 699 |
| ApeKI | GCWGC | 1 cut(s) | 1169 |
| ApoI | RAATTY | 3 cut(s) | 545, 750, 1097 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 823, 855 |
| AsiGI | ACCGGT | 1 cut(s) | 682 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 160, 786 |
| AspLEI | GCGC | 3 cut(s) | 46, 51, 61 |
| AsuC2I | CCSGG | 1 cut(s) | 585 |
| AsuHPI | GGTGA | 2 cut(s) | 92, 718 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 274, 307 |
| BalI | TGGCCA | 1 cut(s) | 701 |
| BbsI | GAAGAC | 1 cut(s) | 284 |
| Bbv12I | GWGCWC | 1 cut(s) | 592 |
| BbvI | GCAGC | 1 cut(s) | 1181 |
| BccI | CCATC | 3 cut(s) | 44, 1102, 1235 |
| BceAI | ACGGC | 2 cut(s) | 993, 1231 |
| BciT130I | CCWGG | 1 cut(s) | 1154 |
| BcnI | CCSGG | 1 cut(s) | 585 |
| BfaI | CTAG | 7 cut(s) | 435, 791, 810, 972, 1025, 1200, 1258 |
| BfmI | CTRYAG | 2 cut(s) | 668, 1124 |
| BfuAI | ACCTGC | 1 cut(s) | 1117 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 41 |
| BglII | AGATCT | 1 cut(s) | 415 |
| BisI | GCNGC | 5 cut(s) | 47, 57, 581, 1170, 1173 |
| BlsI | GCNGC | 5 cut(s) | 48, 58, 582, 1171, 1174 |
| BmcAI | AGTACT | 1 cut(s) | 1122 |
| Bme1390I | CCNGG | 2 cut(s) | 585, 1154 |
| BmiI | GGNNCC | 1 cut(s) | 681 |
| BmrFI | CCNGG | 2 cut(s) | 585, 1154 |
| BmsI | GCATC | 4 cut(s) | 22, 766, 911, 1046 |
| BpiI | GAAGAC | 1 cut(s) | 284 |
| BpmI | CTGGAG | 1 cut(s) | 96 |
| BpuEI | CTTGAG | 3 cut(s) | 87, 342, 440 |
| BpuMI | CCSGG | 1 cut(s) | 585 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1036 |
| BsaJI | CCNNGG | 3 cut(s) | 507, 702, 1152 |
| BsaWI | WCCGGW | 3 cut(s) | 112, 682, 817 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 898, 928, 988, 1018 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 976 |
| Bse118I | RCCGGY | 1 cut(s) | 682 |
| Bse3DI | GCAATG | 1 cut(s) | 1087 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1036 |
| BseAI | TCCGGA | 2 cut(s) | 112, 817 |
| BseBI | CCWGG | 1 cut(s) | 1154 |
| BseDI | CCNNGG | 3 cut(s) | 507, 702, 1152 |
| BseGI | GGATG | 3 cut(s) | 745, 826, 1113 |
| BseJI | GATNNNNATC | 1 cut(s) | 1036 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 976 |
| BseMI | GCAATG | 1 cut(s) | 1087 |
| BseMII | CTCAG | 1 cut(s) | 786 |
| BseX3I | CGGCCG | 1 cut(s) | 581 |
| BseXI | GCAGC | 1 cut(s) | 1181 |
| BseYI | CCCAGC | 1 cut(s) | 13 |
| Bsh1236I | CGCG | 3 cut(s) | 46, 51, 61 |
| Bsh1285I | CGRYCG | 1 cut(s) | 584 |
| BshFI | GGCC | 2 cut(s) | 583, 701 |
| BshTI | ACCGGT | 1 cut(s) | 682 |
| BsiEI | CGRYCG | 1 cut(s) | 584 |
| BsiHKAI | GWGCWC | 1 cut(s) | 592 |
| BsiSI | CCGG | 4 cut(s) | 113, 584, 683, 818 |
| BslFI | GGGAC | 1 cut(s) | 256 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 976 |
| BsmFI | GGGAC | 1 cut(s) | 256 |
| BsnI | GGCC | 2 cut(s) | 583, 701 |
| Bsp1286I | GDGCHC | 1 cut(s) | 592 |
| Bsp13I | TCCGGA | 2 cut(s) | 112, 817 |
| Bsp143I | GATC | 3 cut(s) | 71, 415, 1086 |
| BspANI | GGCC | 2 cut(s) | 583, 701 |
| BspCNI | CTCAG | 1 cut(s) | 785 |
| BspEI | TCCGGA | 2 cut(s) | 112, 817 |
| BspFNI | CGCG | 3 cut(s) | 46, 51, 61 |
| BspLI | GGNNCC | 1 cut(s) | 681 |
| BspMAI | CTGCAG | 1 cut(s) | 1128 |
| BspMI | ACCTGC | 1 cut(s) | 1117 |
| BspPI | GGATC | 1 cut(s) | 1081 |
| BsrBI | CCGCTC | 1 cut(s) | 346 |
| BsrDI | GCAATG | 1 cut(s) | 1087 |
| BsrFI | RCCGGY | 1 cut(s) | 682 |
| BssAI | RCCGGY | 1 cut(s) | 682 |
| BssECI | CCNNGG | 3 cut(s) | 507, 702, 1152 |
| BssMI | GATC | 3 cut(s) | 71, 415, 1086 |
| BssT1I | CCWWGG | 2 cut(s) | 507, 702 |
| Bst2UI | CCWGG | 1 cut(s) | 1154 |
| Bst4CI | ACNGT | 2 cut(s) | 865, 1183 |
| Bst6I | CTCTTC | 1 cut(s) | 507 |
| BstC8I | GCNNGC | 2 cut(s) | 573, 960 |
| BstDEI | CTNAG | 4 cut(s) | 286, 772, 1062, 1231 |
| BstF5I | GGATG | 3 cut(s) | 745, 826, 1113 |
| BstFNI | CGCG | 3 cut(s) | 46, 51, 61 |
| BstHHI | GCGC | 3 cut(s) | 46, 51, 61 |
| BstKTI | GATC | 3 cut(s) | 74, 418, 1089 |
| BstMBI | GATC | 3 cut(s) | 71, 415, 1086 |
| BstMCI | CGRYCG | 1 cut(s) | 584 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 23, 32, 41, 67, 572, 577, 791 |
| BstNI | CCWGG | 1 cut(s) | 1154 |
| BstNSI | RCATGY | 1 cut(s) | 962 |
| BstSCI | CCNGG | 2 cut(s) | 583, 1152 |
| BstSFI | CTRYAG | 2 cut(s) | 668, 1124 |
| BstUI | CGCG | 3 cut(s) | 46, 51, 61 |
| BstV1I | GCAGC | 1 cut(s) | 1181 |
| BstV2I | GAAGAC | 1 cut(s) | 284 |
| BstX2I | RGATCY | 2 cut(s) | 415, 1086 |
| BstYI | RGATCY | 2 cut(s) | 415, 1086 |
| BstZI | CGGCCG | 1 cut(s) | 581 |
| BsuRI | GGCC | 2 cut(s) | 583, 701 |
| BtsCI | GGATG | 3 cut(s) | 745, 826, 1113 |
| BveI | ACCTGC | 1 cut(s) | 1117 |
| Cac8I | GCNNGC | 2 cut(s) | 573, 960 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1175 |
| CfoI | GCGC | 3 cut(s) | 46, 51, 61 |
| Cfr10I | RCCGGY | 1 cut(s) | 682 |
| CseI | GACGC | 2 cut(s) | 50, 318 |
| Csp6I | GTAC | 2 cut(s) | 453, 1121 |
| CspAI | ACCGGT | 1 cut(s) | 682 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 923, 958 |
| CviAII | CATG | 5 cut(s) | 275, 503, 625, 884, 959 |
| CviQI | GTAC | 2 cut(s) | 453, 1121 |
| DdeI | CTNAG | 4 cut(s) | 286, 772, 1062, 1231 |
| DpnI | GATC | 3 cut(s) | 73, 417, 1088 |
| DpnII | GATC | 3 cut(s) | 71, 415, 1086 |
| EaeI | YGGCCR | 2 cut(s) | 581, 699 |
| EagI | CGGCCG | 1 cut(s) | 581 |
| Eam1104I | CTCTTC | 1 cut(s) | 507 |
| EarI | CTCTTC | 1 cut(s) | 507 |
| EclXI | CGGCCG | 1 cut(s) | 581 |
| Eco130I | CCWWGG | 2 cut(s) | 507, 702 |
| Eco52I | CGGCCG | 1 cut(s) | 581 |
| Eco57I | CTGAAG | 1 cut(s) | 147 |
| EcoRI | GAATTC | 1 cut(s) | 1097 |
| EcoRII | CCWGG | 1 cut(s) | 1152 |
| EcoT14I | CCWWGG | 2 cut(s) | 507, 702 |
| ErhI | CCWWGG | 2 cut(s) | 507, 702 |
| FaeI | CATG | 5 cut(s) | 278, 506, 628, 887, 962 |
| FaqI | GGGAC | 1 cut(s) | 256 |
| FatI | CATG | 5 cut(s) | 274, 502, 624, 883, 958 |
| FauI | CCCGC | 2 cut(s) | 339, 624 |
| FauNDI | CATATG | 1 cut(s) | 151 |
| Fnu4HI | GCNGC | 5 cut(s) | 47, 57, 581, 1170, 1173 |
| FokI | GGATG | 3 cut(s) | 752, 833, 1120 |
| Fsp4HI | GCNGC | 5 cut(s) | 47, 57, 581, 1170, 1173 |
| FspBI | CTAG | 7 cut(s) | 435, 791, 810, 972, 1025, 1200, 1258 |
| GlaI | GCGC | 3 cut(s) | 45, 50, 60 |
| GluI | GCNGC | 5 cut(s) | 47, 57, 581, 1170, 1173 |
| GsaI | CCCAGC | 1 cut(s) | 17 |
| GsuI | CTGGAG | 1 cut(s) | 96 |
| HaeIII | GGCC | 2 cut(s) | 583, 701 |
| HapII | CCGG | 4 cut(s) | 113, 584, 683, 818 |
| HgaI | GACGC | 2 cut(s) | 50, 318 |
| HhaI | GCGC | 3 cut(s) | 46, 51, 61 |
| Hin1II | CATG | 5 cut(s) | 278, 506, 628, 887, 962 |
| Hin6I | GCGC | 3 cut(s) | 44, 49, 59 |
| HinP1I | GCGC | 3 cut(s) | 44, 49, 59 |
| HincII | GTYRAC | 1 cut(s) | 178 |
| HindII | GTYRAC | 1 cut(s) | 178 |
| HindIII | AAGCTT | 3 cut(s) | 24, 117, 573 |
| HinfI | GANTC | 4 cut(s) | 269, 635, 643, 1058 |
| HpaI | GTTAAC | 1 cut(s) | 178 |
| HpaII | CCGG | 4 cut(s) | 113, 584, 683, 818 |
| HphI | GGTGA | 2 cut(s) | 92, 718 |
| Hpy166II | GTNNAC | 2 cut(s) | 178, 861 |
| Hpy188I | TCNGA | 5 cut(s) | 22, 31, 534, 544, 775 |
| Hpy188III | TCNNGA | 5 cut(s) | 75, 113, 419, 818, 1025 |
| Hpy8I | GTNNAC | 2 cut(s) | 178, 861 |
| Hpy99I | CGWCG | 2 cut(s) | 66, 1217 |
| HpyAV | CCTTC | 5 cut(s) | 150, 337, 927, 1156, 1181 |
| HpyCH4III | ACNGT | 2 cut(s) | 865, 1183 |
| HpyCH4IV | ACGT | 1 cut(s) | 466 |
| HpyCH4V | TGCA | 7 cut(s) | 218, 688, 779, 875, 902, 1080, 1126 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 23, 32, 41, 67, 572, 577, 791 |
| HpyF3I | CTNAG | 4 cut(s) | 286, 772, 1062, 1231 |
| HpySE526I | ACGT | 1 cut(s) | 466 |
| Hsp92II | CATG | 5 cut(s) | 278, 506, 628, 887, 962 |
| HspAI | GCGC | 3 cut(s) | 44, 49, 59 |
| Kpn2I | TCCGGA | 2 cut(s) | 112, 817 |
| KspAI | GTTAAC | 1 cut(s) | 178 |
| Kzo9I | GATC | 3 cut(s) | 71, 415, 1086 |
| LmnI | GCTCC | 2 cut(s) | 343, 534 |
| Lsp1109I | GCAGC | 1 cut(s) | 1181 |
| LweI | GCATC | 4 cut(s) | 22, 766, 911, 1046 |
| MaeI | CTAG | 7 cut(s) | 435, 791, 810, 972, 1025, 1200, 1258 |
| MaeII | ACGT | 1 cut(s) | 466 |
| MaeIII | GTNAC | 2 cut(s) | 80, 1156 |
| MalI | GATC | 3 cut(s) | 73, 417, 1088 |
| MbiI | CCGCTC | 1 cut(s) | 346 |
| MboI | GATC | 3 cut(s) | 71, 415, 1086 |
| MboII | GAAGA | 8 cut(s) | 284, 425, 493, 503, 524, 546, 958, 1250 |
| MfeI | CAATTG | 1 cut(s) | 392 |
| MflI | RGATCY | 2 cut(s) | 415, 1086 |
| MhlI | GDGCHC | 1 cut(s) | 592 |
| MlsI | TGGCCA | 1 cut(s) | 701 |
| MluNI | TGGCCA | 1 cut(s) | 701 |
| MlyI | GAGTC | 1 cut(s) | 278 |
| MmeI | TCCRAC | 1 cut(s) | 657 |
| MnlI | CCTC | 6 cut(s) | 71, 508, 735, 990, 1087, 1127 |
| Mox20I | TGGCCA | 1 cut(s) | 701 |
| MroI | TCCGGA | 2 cut(s) | 112, 817 |
| MroXI | GAANNNNTTC | 2 cut(s) | 160, 786 |
| MscI | TGGCCA | 1 cut(s) | 701 |
| MseI | TTAA | 3 cut(s) | 177, 549, 987 |
| MslI | CAYNNNNRTG | 1 cut(s) | 774 |
| Msp20I | TGGCCA | 1 cut(s) | 701 |
| MspA1I | CMGCKG | 2 cut(s) | 673, 1172 |
| MspI | CCGG | 4 cut(s) | 113, 584, 683, 818 |
| MspR9I | CCNGG | 2 cut(s) | 585, 1154 |
| MteI | GCGCNGCGC | 1 cut(s) | 47 |
| MunI | CAATTG | 1 cut(s) | 392 |
| MvaI | CCWGG | 1 cut(s) | 1154 |
| MvnI | CGCG | 3 cut(s) | 46, 51, 61 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 23, 32, 41, 67, 572, 577, 791 |
| NciI | CCSGG | 1 cut(s) | 585 |
| NdeI | CATATG | 1 cut(s) | 151 |
| NdeII | GATC | 3 cut(s) | 71, 415, 1086 |
| NlaIII | CATG | 5 cut(s) | 278, 506, 628, 887, 962 |
| NlaIV | GGNNCC | 1 cut(s) | 681 |
| NmuCI | GTSAC | 1 cut(s) | 80 |
| NspI | RCATGY | 1 cut(s) | 962 |
| PaeI | GCATGC | 1 cut(s) | 962 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 563 |
| PdmI | GAANNNNTTC | 2 cut(s) | 160, 786 |
| PfeI | GAWTC | 3 cut(s) | 635, 643, 1058 |
| PinAI | ACCGGT | 1 cut(s) | 682 |
| PkrI | GCNGC | 5 cut(s) | 48, 58, 582, 1171, 1174 |
| PleI | GAGTC | 1 cut(s) | 277 |
| PpsI | GAGTC | 1 cut(s) | 277 |
| Psp6I | CCWGG | 1 cut(s) | 1152 |
| PspFI | CCCAGC | 1 cut(s) | 13 |
| PspGI | CCWGG | 1 cut(s) | 1152 |
| PspN4I | GGNNCC | 1 cut(s) | 681 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1113, 1145 |
| PstI | CTGCAG | 1 cut(s) | 1128 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1175 |
| PsuI | RGATCY | 2 cut(s) | 415, 1086 |
| PvuII | CAGCTG | 1 cut(s) | 673 |
| RsaI | GTAC | 2 cut(s) | 454, 1122 |
| RsaNI | GTAC | 2 cut(s) | 453, 1121 |
| RseI | CAYNNNNRTG | 1 cut(s) | 774 |
| SaqAI | TTAA | 3 cut(s) | 177, 549, 987 |
| SatI | GCNGC | 5 cut(s) | 47, 57, 581, 1170, 1173 |
| Sau3AI | GATC | 3 cut(s) | 71, 415, 1086 |
| ScaI | AGTACT | 1 cut(s) | 1122 |
| SchI | GAGTC | 1 cut(s) | 278 |
| ScrFI | CCNGG | 2 cut(s) | 585, 1154 |
| SduI | GDGCHC | 1 cut(s) | 592 |
| SfaNI | GCATC | 4 cut(s) | 22, 766, 911, 1046 |
| SfcI | CTRYAG | 2 cut(s) | 668, 1124 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 774 |
| SmlI | CTYRAG | 3 cut(s) | 102, 357, 419 |
| SmoI | CTYRAG | 3 cut(s) | 102, 357, 419 |
| SphI | GCATGC | 1 cut(s) | 962 |
| SspI | AATATT | 1 cut(s) | 1012 |
| SspMI | CTAG | 7 cut(s) | 435, 791, 810, 972, 1025, 1200, 1258 |
| StyD4I | CCNGG | 2 cut(s) | 583, 1152 |
| StyI | CCWWGG | 2 cut(s) | 507, 702 |
| TaaI | ACNGT | 2 cut(s) | 865, 1183 |
| TaiI | ACGT | 1 cut(s) | 469 |
| TaqI | TCGA | 3 cut(s) | 557, 1132, 1145 |
| TatI | WGTACW | 2 cut(s) | 452, 1120 |
| TauI | GCSGC | 4 cut(s) | 49, 59, 583, 1175 |
| TfiI | GAWTC | 3 cut(s) | 635, 643, 1058 |
| Tru1I | TTAA | 3 cut(s) | 177, 549, 987 |
| Tru9I | TTAA | 3 cut(s) | 177, 549, 987 |
| TseFI | GTSAC | 1 cut(s) | 80 |
| TseI | GCWGC | 1 cut(s) | 1169 |
| Tsp45I | GTSAC | 1 cut(s) | 80 |
| TspDTI | ATGAA | 2 cut(s) | 116, 173 |
| XapI | RAATTY | 3 cut(s) | 545, 750, 1097 |
| XbaI | TCTAGA | 1 cut(s) | 1024 |
| XceI | RCATGY | 1 cut(s) | 962 |
| XmnI | GAANNNNTTC | 2 cut(s) | 160, 786 |
| XspI | CTAG | 7 cut(s) | 435, 791, 810, 972, 1025, 1200, 1258 |
| ZrmI | AGTACT | 1 cut(s) | 1122 |