Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 166, 242 |
| AccB1I | GGYRCC | 1 cut(s) | 851 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 824 |
| AciI | CCGC | 4 cut(s) | 182, 286, 475, 691 |
| AclWI | GGATC | 2 cut(s) | 222, 404 |
| AcyI | GRCGYC | 1 cut(s) | 852 |
| AfaI | GTAC | 3 cut(s) | 264, 525, 883 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 24, 561, 824, 878 |
| AgsI | TTSAA | 2 cut(s) | 59, 841 |
| AluBI | AGCT | 5 cut(s) | 62, 224, 254, 434, 712 |
| AluI | AGCT | 5 cut(s) | 62, 224, 254, 434, 712 |
| Alw21I | GWGCWC | 1 cut(s) | 709 |
| Alw26I | GTCTC | 1 cut(s) | 136 |
| AlwI | GGATC | 2 cut(s) | 222, 404 |
| Ama87I | CYCGRG | 1 cut(s) | 597 |
| AoxI | GGCC | 4 cut(s) | 47, 688, 753, 812 |
| ApeKI | GCWGC | 2 cut(s) | 221, 790 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 152, 184 |
| AspA2I | CCTAGG | 1 cut(s) | 560 |
| AspLEI | GCGC | 2 cut(s) | 12, 854 |
| AspS9I | GGNCC | 2 cut(s) | 419, 542 |
| AsuHPI | GGTGA | 1 cut(s) | 844 |
| AvaI | CYCGRG | 1 cut(s) | 597 |
| AvaII | GGWCC | 2 cut(s) | 419, 542 |
| AvrII | CCTAGG | 1 cut(s) | 560 |
| AxyI | CCTNAGG | 1 cut(s) | 246 |
| BanI | GGYRCC | 1 cut(s) | 851 |
| BauI | CACGAG | 1 cut(s) | 22 |
| BbsI | GAAGAC | 1 cut(s) | 855 |
| Bbv12I | GWGCWC | 1 cut(s) | 709 |
| BbvI | GCAGC | 2 cut(s) | 233, 802 |
| BccI | CCATC | 6 cut(s) | 80, 278, 583, 818, 823, 842 |
| BceAI | ACGGC | 1 cut(s) | 738 |
| BclI | TGATCA | 1 cut(s) | 628 |
| BcoDI | GTCTC | 1 cut(s) | 136 |
| BfaI | CTAG | 3 cut(s) | 456, 561, 907 |
| BfoI | RGCGCY | 2 cut(s) | 13, 855 |
| BfuAI | ACCTGC | 2 cut(s) | 166, 242 |
| BisI | GCNGC | 3 cut(s) | 222, 691, 791 |
| BlnI | CCTAGG | 1 cut(s) | 560 |
| BlpI | GCTNAGC | 1 cut(s) | 708 |
| BlsI | GCNGC | 3 cut(s) | 223, 692, 792 |
| BmcAI | AGTACT | 1 cut(s) | 264 |
| Bme18I | GGWCC | 2 cut(s) | 419, 542 |
| BmeT110I | CYCGRG | 1 cut(s) | 597 |
| BmgT120I | GGNCC | 2 cut(s) | 419, 542 |
| BmiI | GGNNCC | 1 cut(s) | 853 |
| BmsI | GCATC | 1 cut(s) | 629 |
| BpiI | GAAGAC | 1 cut(s) | 855 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 31 |
| BpmI | CTGGAG | 1 cut(s) | 801 |
| Bpu10I | CCTNAGC | 1 cut(s) | 896 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 708 |
| BsaHI | GRCGYC | 1 cut(s) | 852 |
| BsaJI | CCNNGG | 3 cut(s) | 193, 560, 720 |
| BsaWI | WCCGGW | 1 cut(s) | 154 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 118, 148 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 24, 561, 824, 878 |
| Bse1I | ACTGG | 2 cut(s) | 590, 702 |
| Bse21I | CCTNAGG | 1 cut(s) | 246 |
| BseDI | CCNNGG | 3 cut(s) | 193, 560, 720 |
| BseGI | GGATG | 6 cut(s) | 10, 163, 270, 526, 594, 834 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 24, 561, 824, 878 |
| BseMII | CTCAG | 4 cut(s) | 105, 260, 387, 722 |
| BseNI | ACTGG | 2 cut(s) | 590, 702 |
| BseRI | GAGGAG | 2 cut(s) | 126, 478 |
| BseXI | GCAGC | 2 cut(s) | 233, 802 |
| BseYI | CCCAGC | 2 cut(s) | 777, 786 |
| BshFI | GGCC | 4 cut(s) | 49, 690, 755, 814 |
| BshNI | GGYRCC | 1 cut(s) | 851 |
| BsiHKAI | GWGCWC | 1 cut(s) | 709 |
| BsiHKCI | CYCGRG | 1 cut(s) | 597 |
| BsiSI | CCGG | 1 cut(s) | 155 |
| BslFI | GGGAC | 2 cut(s) | 437, 769 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 24, 561, 824, 878 |
| BsmAI | GTCTC | 1 cut(s) | 136 |
| BsmFI | GGGAC | 2 cut(s) | 437, 769 |
| BsmI | GAATGC | 1 cut(s) | 115 |
| BsnI | GGCC | 4 cut(s) | 49, 690, 755, 814 |
| BsoBI | CYCGRG | 1 cut(s) | 597 |
| Bsp1286I | GDGCHC | 1 cut(s) | 709 |
| Bsp1407I | TGTACA | 1 cut(s) | 523 |
| Bsp143I | GATC | 3 cut(s) | 214, 409, 628 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 708 |
| Bsp19I | CCATGG | 1 cut(s) | 193 |
| BspACI | CCGC | 4 cut(s) | 182, 286, 475, 691 |
| BspANI | GGCC | 4 cut(s) | 49, 690, 755, 814 |
| BspCNI | CTCAG | 4 cut(s) | 106, 259, 386, 721 |
| BspHI | TCATGA | 1 cut(s) | 295 |
| BspLI | GGNNCC | 1 cut(s) | 853 |
| BspMI | ACCTGC | 2 cut(s) | 166, 242 |
| BspPI | GGATC | 2 cut(s) | 222, 404 |
| BspT107I | GGYRCC | 1 cut(s) | 851 |
| BsrGI | TGTACA | 1 cut(s) | 523 |
| BsrI | ACTGG | 2 cut(s) | 590, 702 |
| BssECI | CCNNGG | 3 cut(s) | 193, 560, 720 |
| BssMI | GATC | 3 cut(s) | 214, 409, 628 |
| BssNI | GRCGYC | 1 cut(s) | 852 |
| BssSI | CACGAG | 1 cut(s) | 22 |
| BssT1I | CCWWGG | 2 cut(s) | 193, 560 |
| Bst2BI | CACGAG | 1 cut(s) | 22 |
| Bst4CI | ACNGT | 6 cut(s) | 130, 166, 419, 549, 576, 881 |
| BstACI | GRCGYC | 1 cut(s) | 852 |
| BstAUI | TGTACA | 1 cut(s) | 523 |
| BstC8I | GCNNGC | 1 cut(s) | 893 |
| BstDEI | CTNAG | 5 cut(s) | 114, 246, 373, 708, 896 |
| BstDSI | CCRYGG | 2 cut(s) | 193, 720 |
| BstF5I | GGATG | 6 cut(s) | 10, 163, 270, 526, 594, 834 |
| BstH2I | RGCGCY | 2 cut(s) | 13, 855 |
| BstHHI | GCGC | 2 cut(s) | 12, 854 |
| BstKTI | GATC | 3 cut(s) | 217, 412, 631 |
| BstMAI | GTCTC | 1 cut(s) | 136 |
| BstMBI | GATC | 3 cut(s) | 214, 409, 628 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 696, 787, 811 |
| BstV1I | GCAGC | 2 cut(s) | 233, 802 |
| BstV2I | GAAGAC | 1 cut(s) | 855 |
| BstX2I | RGATCY | 1 cut(s) | 409 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 727 |
| BstYI | RGATCY | 1 cut(s) | 409 |
| Bsu36I | CCTNAGG | 1 cut(s) | 246 |
| BsuRI | GGCC | 4 cut(s) | 49, 690, 755, 814 |
| BtgI | CCRYGG | 2 cut(s) | 193, 720 |
| BtsCI | GGATG | 6 cut(s) | 10, 163, 270, 526, 594, 834 |
| BtsI | GCAGTG | 1 cut(s) | 812 |
| BtsIMutI | CAGTG | 4 cut(s) | 102, 162, 709, 812 |
| BveI | ACCTGC | 2 cut(s) | 166, 242 |
| Cac8I | GCNNGC | 1 cut(s) | 893 |
| CciI | TCATGA | 1 cut(s) | 295 |
| CfoI | GCGC | 2 cut(s) | 12, 854 |
| Cfr13I | GGNCC | 2 cut(s) | 419, 542 |
| Csp6I | GTAC | 3 cut(s) | 263, 524, 882 |
| CviAII | CATG | 3 cut(s) | 194, 218, 296 |
| CviQI | GTAC | 3 cut(s) | 263, 524, 882 |
| DdeI | CTNAG | 5 cut(s) | 114, 246, 373, 708, 896 |
| DinI | GGCGCC | 1 cut(s) | 853 |
| DpnI | GATC | 3 cut(s) | 216, 411, 630 |
| DpnII | GATC | 3 cut(s) | 214, 409, 628 |
| Eco130I | CCWWGG | 2 cut(s) | 193, 560 |
| Eco47I | GGWCC | 2 cut(s) | 419, 542 |
| Eco81I | CCTNAGG | 1 cut(s) | 246 |
| Eco88I | CYCGRG | 1 cut(s) | 597 |
| EcoT14I | CCWWGG | 2 cut(s) | 193, 560 |
| EgeI | GGCGCC | 1 cut(s) | 853 |
| EheI | GGCGCC | 1 cut(s) | 853 |
| ErhI | CCWWGG | 2 cut(s) | 193, 560 |
| FaeI | CATG | 3 cut(s) | 197, 221, 299 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 51, 83 |
| FaqI | GGGAC | 2 cut(s) | 437, 769 |
| FatI | CATG | 3 cut(s) | 193, 217, 295 |
| FbaI | TGATCA | 1 cut(s) | 628 |
| Fnu4HI | GCNGC | 3 cut(s) | 222, 691, 791 |
| FokI | GGATG | 6 cut(s) | 17, 170, 257, 533, 601, 841 |
| Fsp4HI | GCNGC | 3 cut(s) | 222, 691, 791 |
| FspBI | CTAG | 3 cut(s) | 456, 561, 907 |
| GlaI | GCGC | 2 cut(s) | 11, 853 |
| GluI | GCNGC | 3 cut(s) | 222, 691, 791 |
| GsaI | CCCAGC | 2 cut(s) | 781, 790 |
| GsuI | CTGGAG | 1 cut(s) | 801 |
| HaeII | RGCGCY | 2 cut(s) | 13, 855 |
| HaeIII | GGCC | 4 cut(s) | 49, 690, 755, 814 |
| HapII | CCGG | 1 cut(s) | 155 |
| HhaI | GCGC | 2 cut(s) | 12, 854 |
| Hin1I | GRCGYC | 1 cut(s) | 852 |
| Hin1II | CATG | 3 cut(s) | 197, 221, 299 |
| Hin6I | GCGC | 2 cut(s) | 10, 852 |
| HinP1I | GCGC | 2 cut(s) | 10, 852 |
| HincII | GTYRAC | 1 cut(s) | 772 |
| HindII | GTYRAC | 1 cut(s) | 772 |
| HinfI | GANTC | 3 cut(s) | 121, 200, 868 |
| HpaII | CCGG | 1 cut(s) | 155 |
| HphI | GGTGA | 1 cut(s) | 844 |
| Hpy166II | GTNNAC | 2 cut(s) | 545, 772 |
| Hpy188III | TCNNGA | 4 cut(s) | 296, 343, 427, 658 |
| Hpy8I | GTNNAC | 2 cut(s) | 545, 772 |
| Hpy99I | CGWCG | 1 cut(s) | 881 |
| HpyAV | CCTTC | 1 cut(s) | 865 |
| HpyCH4III | ACNGT | 6 cut(s) | 130, 166, 419, 549, 576, 881 |
| HpyCH4V | TGCA | 4 cut(s) | 221, 480, 620, 699 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 696, 787, 811 |
| HpyF3I | CTNAG | 5 cut(s) | 114, 246, 373, 708, 896 |
| Hsp92I | GRCGYC | 1 cut(s) | 852 |
| Hsp92II | CATG | 3 cut(s) | 197, 221, 299 |
| HspAI | GCGC | 2 cut(s) | 10, 852 |
| KasI | GGCGCC | 1 cut(s) | 851 |
| Ksp22I | TGATCA | 1 cut(s) | 628 |
| Kzo9I | GATC | 3 cut(s) | 214, 409, 628 |
| Lsp1109I | GCAGC | 2 cut(s) | 233, 802 |
| LweI | GCATC | 1 cut(s) | 629 |
| MaeI | CTAG | 3 cut(s) | 456, 561, 907 |
| MalI | GATC | 3 cut(s) | 216, 411, 630 |
| MboI | GATC | 3 cut(s) | 214, 409, 628 |
| MboII | GAAGA | 3 cut(s) | 325, 390, 855 |
| MflI | RGATCY | 1 cut(s) | 409 |
| MhlI | GDGCHC | 1 cut(s) | 709 |
| MluCI | AATT | 1 cut(s) | 78 |
| Mly113I | GGCGCC | 1 cut(s) | 852 |
| MseI | TTAA | 2 cut(s) | 35, 278 |
| MslI | CAYNNNNRTG | 2 cut(s) | 669, 725 |
| MspA1I | CMGCKG | 1 cut(s) | 224 |
| MspI | CCGG | 1 cut(s) | 155 |
| Mva1269I | GAATGC | 1 cut(s) | 115 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 696, 787, 811 |
| NarI | GGCGCC | 1 cut(s) | 852 |
| NcoI | CCATGG | 1 cut(s) | 193 |
| NdeII | GATC | 3 cut(s) | 214, 409, 628 |
| NlaIII | CATG | 3 cut(s) | 197, 221, 299 |
| NlaIV | GGNNCC | 1 cut(s) | 853 |
| NmeAIII | GCCGAG | 1 cut(s) | 25 |
| PagI | TCATGA | 1 cut(s) | 295 |
| PctI | GAATGC | 1 cut(s) | 115 |
| PfeI | GAWTC | 3 cut(s) | 121, 200, 868 |
| PflFI | GACNNNGTC | 1 cut(s) | 164 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 824 |
| PkrI | GCNGC | 3 cut(s) | 223, 692, 792 |
| PluTI | GGCGCC | 1 cut(s) | 855 |
| PspFI | CCCAGC | 2 cut(s) | 777, 786 |
| PspN4I | GGNNCC | 1 cut(s) | 853 |
| PspPI | GGNCC | 2 cut(s) | 419, 542 |
| PsuI | RGATCY | 1 cut(s) | 409 |
| PsyI | GACNNNGTC | 1 cut(s) | 164 |
| PvuII | CAGCTG | 1 cut(s) | 224 |
| RsaI | GTAC | 3 cut(s) | 264, 525, 883 |
| RsaNI | GTAC | 3 cut(s) | 263, 524, 882 |
| RseI | CAYNNNNRTG | 2 cut(s) | 669, 725 |
| SaqAI | TTAA | 2 cut(s) | 35, 278 |
| SatI | GCNGC | 3 cut(s) | 222, 691, 791 |
| Sau3AI | GATC | 3 cut(s) | 214, 409, 628 |
| Sau96I | GGNCC | 2 cut(s) | 419, 542 |
| ScaI | AGTACT | 1 cut(s) | 264 |
| SduI | GDGCHC | 1 cut(s) | 709 |
| SfaNI | GCATC | 1 cut(s) | 629 |
| SfoI | GGCGCC | 1 cut(s) | 853 |
| SinI | GGWCC | 2 cut(s) | 419, 542 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 669, 725 |
| Sse9I | AATT | 1 cut(s) | 78 |
| SsiI | CCGC | 4 cut(s) | 182, 286, 475, 691 |
| SspDI | GGCGCC | 1 cut(s) | 851 |
| SspMI | CTAG | 3 cut(s) | 456, 561, 907 |
| StyI | CCWWGG | 2 cut(s) | 193, 560 |
| TaaI | ACNGT | 6 cut(s) | 130, 166, 419, 549, 576, 881 |
| TaqI | TCGA | 3 cut(s) | 355, 866, 876 |
| TasI | AATT | 1 cut(s) | 78 |
| TatI | WGTACW | 2 cut(s) | 262, 523 |
| TauI | GCSGC | 1 cut(s) | 693 |
| TfiI | GAWTC | 3 cut(s) | 121, 200, 868 |
| Tru1I | TTAA | 2 cut(s) | 35, 278 |
| Tru9I | TTAA | 2 cut(s) | 35, 278 |
| TscAI | CASTG | 4 cut(s) | 102, 169, 709, 812 |
| TseI | GCWGC | 2 cut(s) | 221, 790 |
| TspDTI | ATGAA | 2 cut(s) | 192, 384 |
| TspRI | CASTG | 4 cut(s) | 102, 169, 709, 812 |
| Tth111I | GACNNNGTC | 1 cut(s) | 164 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 824 |
| VpaK11BI | GGWCC | 2 cut(s) | 419, 542 |
| XmaJI | CCTAGG | 1 cut(s) | 560 |
| XspI | CTAG | 3 cut(s) | 456, 561, 907 |
| ZrmI | AGTACT | 1 cut(s) | 264 |