Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 697, 1034 |
| AccBSI | CCGCTC | 1 cut(s) | 199 |
| AciI | CCGC | 2 cut(s) | 199, 520 |
| AclWI | GGATC | 3 cut(s) | 466, 625, 719 |
| AcoI | YGGCCR | 2 cut(s) | 270, 636 |
| AfaI | GTAC | 4 cut(s) | 318, 436, 597, 1005 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 150 |
| AgsI | TTSAA | 6 cut(s) | 238, 772, 821, 899, 973, 1024 |
| AjnI | CCWGG | 1 cut(s) | 633 |
| AleI | CACNNNNGTG | 1 cut(s) | 135 |
| AluBI | AGCT | 4 cut(s) | 544, 885, 947, 953 |
| AluI | AGCT | 4 cut(s) | 544, 885, 947, 953 |
| Alw26I | GTCTC | 2 cut(s) | 212, 806 |
| AlwI | GGATC | 3 cut(s) | 466, 625, 719 |
| AoxI | GGCC | 3 cut(s) | 270, 416, 636 |
| ApeKI | GCWGC | 2 cut(s) | 140, 994 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 780 |
| AsuHPI | GGTGA | 5 cut(s) | 122, 167, 202, 464, 509 |
| AsuNHI | GCTAGC | 1 cut(s) | 928 |
| AxyI | CCTNAGG | 1 cut(s) | 960 |
| BaeGI | GKGCMC | 2 cut(s) | 702, 847 |
| BalI | TGGCCA | 2 cut(s) | 272, 638 |
| BanI | GGYRCC | 2 cut(s) | 697, 1034 |
| BbvI | GCAGC | 2 cut(s) | 152, 1006 |
| BccI | CCATC | 5 cut(s) | 435, 449, 647, 829, 1025 |
| BciT130I | CCWGG | 1 cut(s) | 635 |
| BciVI | GTATCC | 2 cut(s) | 413, 483 |
| BcoDI | GTCTC | 2 cut(s) | 212, 806 |
| BfaI | CTAG | 5 cut(s) | 438, 525, 539, 929, 948 |
| BfmI | CTRYAG | 1 cut(s) | 734 |
| BfuI | GTATCC | 2 cut(s) | 413, 483 |
| BisI | GCNGC | 3 cut(s) | 141, 200, 995 |
| BlsI | GCNGC | 3 cut(s) | 142, 201, 996 |
| Bme1390I | CCNGG | 1 cut(s) | 635 |
| BmiI | GGNNCC | 3 cut(s) | 690, 699, 1036 |
| BmrFI | CCNGG | 1 cut(s) | 635 |
| BmsI | GCATC | 1 cut(s) | 571 |
| BmtI | GCTAGC | 1 cut(s) | 932 |
| BpmI | CTGGAG | 1 cut(s) | 700 |
| BpuEI | CTTGAG | 1 cut(s) | 806 |
| BsaBI | GATNNNNATC | 1 cut(s) | 126 |
| BsaJI | CCNNGG | 1 cut(s) | 692 |
| BsaWI | WCCGGW | 1 cut(s) | 333 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 353, 383 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 150 |
| Bse118I | RCCGGY | 1 cut(s) | 32 |
| Bse1I | ACTGG | 3 cut(s) | 484, 575, 995 |
| Bse21I | CCTNAGG | 1 cut(s) | 960 |
| Bse8I | GATNNNNATC | 1 cut(s) | 126 |
| BseBI | CCWGG | 1 cut(s) | 635 |
| BseDI | CCNNGG | 1 cut(s) | 692 |
| BseGI | GGATG | 1 cut(s) | 639 |
| BseJI | GATNNNNATC | 1 cut(s) | 126 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 150 |
| BseMII | CTCAG | 3 cut(s) | 357, 476, 974 |
| BseNI | ACTGG | 3 cut(s) | 484, 575, 995 |
| BseRI | GAGGAG | 1 cut(s) | 707 |
| BseSI | GKGCMC | 2 cut(s) | 702, 847 |
| BseXI | GCAGC | 2 cut(s) | 152, 1006 |
| BsgI | GTGCAG | 1 cut(s) | 159 |
| BshFI | GGCC | 3 cut(s) | 272, 418, 638 |
| BshNI | GGYRCC | 2 cut(s) | 697, 1034 |
| BsiSI | CCGG | 3 cut(s) | 33, 334, 998 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 150 |
| BsmAI | GTCTC | 2 cut(s) | 212, 806 |
| BsnI | GGCC | 3 cut(s) | 272, 418, 638 |
| Bsp1286I | GDGCHC | 2 cut(s) | 702, 847 |
| Bsp1407I | TGTACA | 1 cut(s) | 316 |
| Bsp143I | GATC | 3 cut(s) | 458, 630, 724 |
| BspACI | CCGC | 2 cut(s) | 199, 520 |
| BspANI | GGCC | 3 cut(s) | 272, 418, 638 |
| BspCNI | CTCAG | 3 cut(s) | 358, 475, 973 |
| BspHI | TCATGA | 1 cut(s) | 45 |
| BspLI | GGNNCC | 3 cut(s) | 690, 699, 1036 |
| BspOI | GCTAGC | 1 cut(s) | 932 |
| BspPI | GGATC | 3 cut(s) | 466, 625, 719 |
| BspT107I | GGYRCC | 2 cut(s) | 697, 1034 |
| BsrBI | CCGCTC | 1 cut(s) | 199 |
| BsrFI | RCCGGY | 1 cut(s) | 32 |
| BsrGI | TGTACA | 1 cut(s) | 316 |
| BsrI | ACTGG | 3 cut(s) | 484, 575, 995 |
| BssAI | RCCGGY | 1 cut(s) | 32 |
| BssECI | CCNNGG | 1 cut(s) | 692 |
| BssMI | GATC | 3 cut(s) | 458, 630, 724 |
| Bst2UI | CCWGG | 1 cut(s) | 635 |
| Bst4CI | ACNGT | 2 cut(s) | 849, 895 |
| Bst6I | CTCTTC | 1 cut(s) | 802 |
| BstAUI | TGTACA | 1 cut(s) | 316 |
| BstC8I | GCNNGC | 2 cut(s) | 416, 930 |
| BstDEI | CTNAG | 5 cut(s) | 23, 366, 462, 709, 960 |
| BstEII | GGTNACC | 1 cut(s) | 292 |
| BstF5I | GGATG | 1 cut(s) | 639 |
| BstKTI | GATC | 3 cut(s) | 461, 633, 727 |
| BstMAI | GTCTC | 2 cut(s) | 212, 806 |
| BstMBI | GATC | 3 cut(s) | 458, 630, 724 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 269 |
| BstNI | CCWGG | 1 cut(s) | 635 |
| BstNSI | RCATGY | 1 cut(s) | 662 |
| BstPI | GGTNACC | 1 cut(s) | 292 |
| BstSCI | CCNGG | 1 cut(s) | 633 |
| BstSFI | CTRYAG | 1 cut(s) | 734 |
| BstSLI | GKGCMC | 2 cut(s) | 702, 847 |
| BstV1I | GCAGC | 2 cut(s) | 152, 1006 |
| BstX2I | RGATCY | 2 cut(s) | 458, 630 |
| BstYI | RGATCY | 2 cut(s) | 458, 630 |
| Bsu36I | CCTNAGG | 1 cut(s) | 960 |
| BsuI | GTATCC | 2 cut(s) | 413, 483 |
| BsuRI | GGCC | 3 cut(s) | 272, 418, 638 |
| BtsCI | GGATG | 1 cut(s) | 639 |
| BtsI | GCAGTG | 1 cut(s) | 496 |
| BtsIMutI | CAGTG | 5 cut(s) | 491, 496, 531, 845, 988 |
| Cac8I | GCNNGC | 2 cut(s) | 416, 930 |
| CciI | TCATGA | 1 cut(s) | 45 |
| Cfr10I | RCCGGY | 1 cut(s) | 32 |
| Csp6I | GTAC | 4 cut(s) | 317, 435, 596, 1004 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 467, 502 |
| CviAII | CATG | 7 cut(s) | 46, 85, 229, 659, 904, 914, 924 |
| CviQI | GTAC | 4 cut(s) | 317, 435, 596, 1004 |
| DdeI | CTNAG | 5 cut(s) | 23, 366, 462, 709, 960 |
| DpnI | GATC | 3 cut(s) | 460, 632, 726 |
| DpnII | GATC | 3 cut(s) | 458, 630, 724 |
| EaeI | YGGCCR | 2 cut(s) | 270, 636 |
| Eam1104I | CTCTTC | 1 cut(s) | 802 |
| EarI | CTCTTC | 1 cut(s) | 802 |
| Eco81I | CCTNAGG | 1 cut(s) | 960 |
| Eco91I | GGTNACC | 1 cut(s) | 292 |
| EcoO65I | GGTNACC | 1 cut(s) | 292 |
| EcoRII | CCWGG | 1 cut(s) | 633 |
| EcoT22I | ATGCAT | 1 cut(s) | 564 |
| FaeI | CATG | 7 cut(s) | 49, 88, 232, 662, 907, 917, 927 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 765, 797, 799, 831 |
| FatI | CATG | 7 cut(s) | 45, 84, 228, 658, 903, 913, 923 |
| Fnu4HI | GCNGC | 3 cut(s) | 141, 200, 995 |
| FokI | GGATG | 1 cut(s) | 626 |
| Fsp4HI | GCNGC | 3 cut(s) | 141, 200, 995 |
| FspBI | CTAG | 5 cut(s) | 438, 525, 539, 929, 948 |
| GluI | GCNGC | 3 cut(s) | 141, 200, 995 |
| GsuI | CTGGAG | 1 cut(s) | 700 |
| HaeIII | GGCC | 3 cut(s) | 272, 418, 638 |
| HapII | CCGG | 3 cut(s) | 33, 334, 998 |
| Hin1II | CATG | 7 cut(s) | 49, 88, 232, 662, 907, 917, 927 |
| HincII | GTYRAC | 1 cut(s) | 667 |
| HindII | GTYRAC | 1 cut(s) | 667 |
| HinfI | GANTC | 4 cut(s) | 305, 514, 982, 1009 |
| HpaII | CCGG | 3 cut(s) | 33, 334, 998 |
| HphI | GGTGA | 5 cut(s) | 122, 167, 202, 464, 509 |
| Hpy166II | GTNNAC | 2 cut(s) | 325, 667 |
| Hpy188I | TCNGA | 4 cut(s) | 196, 465, 513, 724 |
| Hpy188III | TCNNGA | 5 cut(s) | 46, 566, 679, 785, 940 |
| Hpy8I | GTNNAC | 2 cut(s) | 325, 667 |
| HpyAV | CCTTC | 4 cut(s) | 154, 393, 439, 920 |
| HpyCH4III | ACNGT | 2 cut(s) | 849, 895 |
| HpyCH4V | TGCA | 4 cut(s) | 140, 562, 764, 917 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 269 |
| HpyF3I | CTNAG | 5 cut(s) | 23, 366, 462, 709, 960 |
| Hsp92II | CATG | 7 cut(s) | 49, 88, 232, 662, 907, 917, 927 |
| Kzo9I | GATC | 3 cut(s) | 458, 630, 724 |
| LmnI | GCTCC | 1 cut(s) | 196 |
| Lsp1109I | GCAGC | 2 cut(s) | 152, 1006 |
| LweI | GCATC | 1 cut(s) | 571 |
| MaeI | CTAG | 5 cut(s) | 438, 525, 539, 929, 948 |
| MaeIII | GTNAC | 2 cut(s) | 292, 860 |
| MalI | GATC | 3 cut(s) | 460, 632, 726 |
| MbiI | CCGCTC | 1 cut(s) | 199 |
| MboI | GATC | 3 cut(s) | 458, 630, 724 |
| MboII | GAAGA | 2 cut(s) | 139, 819 |
| MfeI | CAATTG | 1 cut(s) | 1049 |
| MflI | RGATCY | 2 cut(s) | 458, 630 |
| MhlI | GDGCHC | 2 cut(s) | 702, 847 |
| MlsI | TGGCCA | 2 cut(s) | 272, 638 |
| MluCI | AATT | 2 cut(s) | 88, 1049 |
| MluNI | TGGCCA | 2 cut(s) | 272, 638 |
| MlyI | GAGTC | 1 cut(s) | 299 |
| MmeI | TCCRAC | 1 cut(s) | 263 |
| MnlI | CCTC | 9 cut(s) | 122, 214, 218, 355, 687, 728, 739, 769, 969 |
| Mox20I | TGGCCA | 2 cut(s) | 272, 638 |
| Mph1103I | ATGCAT | 1 cut(s) | 564 |
| MroXI | GAANNNNTTC | 1 cut(s) | 780 |
| MscI | TGGCCA | 2 cut(s) | 272, 638 |
| MseI | TTAA | 1 cut(s) | 588 |
| MslI | CAYNNNNRTG | 2 cut(s) | 135, 922 |
| Msp20I | TGGCCA | 2 cut(s) | 272, 638 |
| MspI | CCGG | 3 cut(s) | 33, 334, 998 |
| MspR9I | CCNGG | 1 cut(s) | 635 |
| MunI | CAATTG | 1 cut(s) | 1049 |
| MvaI | CCWGG | 1 cut(s) | 635 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 269 |
| NdeII | GATC | 3 cut(s) | 458, 630, 724 |
| NheI | GCTAGC | 1 cut(s) | 928 |
| NlaIII | CATG | 7 cut(s) | 49, 88, 232, 662, 907, 917, 927 |
| NlaIV | GGNNCC | 3 cut(s) | 690, 699, 1036 |
| NsiI | ATGCAT | 1 cut(s) | 564 |
| NspI | RCATGY | 1 cut(s) | 662 |
| OliI | CACNNNNGTG | 1 cut(s) | 135 |
| PagI | TCATGA | 1 cut(s) | 45 |
| PdmI | GAANNNNTTC | 1 cut(s) | 780 |
| PfeI | GAWTC | 3 cut(s) | 514, 982, 1009 |
| PkrI | GCNGC | 3 cut(s) | 142, 201, 996 |
| PleI | GAGTC | 1 cut(s) | 299 |
| PpsI | GAGTC | 1 cut(s) | 299 |
| Psp6I | CCWGG | 1 cut(s) | 633 |
| PspEI | GGTNACC | 1 cut(s) | 292 |
| PspGI | CCWGG | 1 cut(s) | 633 |
| PspN4I | GGNNCC | 3 cut(s) | 690, 699, 1036 |
| PsuI | RGATCY | 2 cut(s) | 458, 630 |
| RsaI | GTAC | 4 cut(s) | 318, 436, 597, 1005 |
| RsaNI | GTAC | 4 cut(s) | 317, 435, 596, 1004 |
| RseI | CAYNNNNRTG | 2 cut(s) | 135, 922 |
| SaqAI | TTAA | 1 cut(s) | 588 |
| SatI | GCNGC | 3 cut(s) | 141, 200, 995 |
| Sau3AI | GATC | 3 cut(s) | 458, 630, 724 |
| SchI | GAGTC | 1 cut(s) | 299 |
| ScrFI | CCNGG | 1 cut(s) | 635 |
| SduI | GDGCHC | 2 cut(s) | 702, 847 |
| SfaNI | GCATC | 1 cut(s) | 571 |
| SfcI | CTRYAG | 1 cut(s) | 734 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 135, 922 |
| SmlI | CTYRAG | 1 cut(s) | 785 |
| SmoI | CTYRAG | 1 cut(s) | 785 |
| Sse9I | AATT | 2 cut(s) | 88, 1049 |
| SsiI | CCGC | 2 cut(s) | 199, 520 |
| SspI | AATATT | 1 cut(s) | 244 |
| SspMI | CTAG | 5 cut(s) | 438, 525, 539, 929, 948 |
| StyD4I | CCNGG | 1 cut(s) | 633 |
| TaaI | ACNGT | 2 cut(s) | 849, 895 |
| TasI | AATT | 2 cut(s) | 88, 1049 |
| TatI | WGTACW | 3 cut(s) | 316, 434, 595 |
| TauI | GCSGC | 1 cut(s) | 202 |
| TfiI | GAWTC | 3 cut(s) | 514, 982, 1009 |
| Tru1I | TTAA | 1 cut(s) | 588 |
| Tru9I | TTAA | 1 cut(s) | 588 |
| TscAI | CASTG | 5 cut(s) | 491, 503, 538, 852, 995 |
| TseI | GCWGC | 2 cut(s) | 140, 994 |
| TspDTI | ATGAA | 4 cut(s) | 101, 116, 375, 902 |
| TspGWI | ACGGA | 1 cut(s) | 1021 |
| TspRI | CASTG | 5 cut(s) | 491, 503, 538, 852, 995 |
| XceI | RCATGY | 1 cut(s) | 662 |
| XmnI | GAANNNNTTC | 1 cut(s) | 780 |
| XspI | CTAG | 5 cut(s) | 438, 525, 539, 929, 948 |
| Zsp2I | ATGCAT | 1 cut(s) | 564 |