Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 61 - 133 | 8.6e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 431 |
| AciI | CCGC | 2 cut(s) | 66, 145 |
| AclI | AACGTT | 1 cut(s) | 106 |
| AclWI | GGATC | 1 cut(s) | 315 |
| AcsI | RAATTY | 1 cut(s) | 277 |
| AdeI | CACNNNGTG | 1 cut(s) | 86 |
| AfaI | GTAC | 1 cut(s) | 478 |
| AgsI | TTSAA | 3 cut(s) | 92, 247, 452 |
| AluBI | AGCT | 2 cut(s) | 271, 377 |
| AluI | AGCT | 2 cut(s) | 271, 377 |
| Alw26I | GTCTC | 2 cut(s) | 104, 221 |
| AlwI | GGATC | 1 cut(s) | 315 |
| ApeKI | GCWGC | 3 cut(s) | 271, 377, 401 |
| ApoI | RAATTY | 1 cut(s) | 277 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 220, 252 |
| AsuHPI | GGTGA | 1 cut(s) | 88 |
| BauI | CACGAG | 2 cut(s) | 50, 84 |
| BbvI | GCAGC | 3 cut(s) | 258, 364, 388 |
| BccI | CCATC | 1 cut(s) | 448 |
| BceAI | ACGGC | 1 cut(s) | 23 |
| BcoDI | GTCTC | 2 cut(s) | 104, 221 |
| BfaI | CTAG | 3 cut(s) | 141, 317, 357 |
| BfmI | CTRYAG | 1 cut(s) | 272 |
| BisI | GCNGC | 5 cut(s) | 66, 145, 272, 378, 402 |
| BlsI | GCNGC | 5 cut(s) | 67, 146, 273, 379, 403 |
| BmiI | GGNNCC | 2 cut(s) | 37, 64 |
| BmsI | GCATC | 2 cut(s) | 316, 343 |
| BpmI | CTGGAG | 1 cut(s) | 81 |
| BsaJI | CCNNGG | 1 cut(s) | 31 |
| BseDI | CCNNGG | 1 cut(s) | 31 |
| BseMII | CTCAG | 2 cut(s) | 325, 396 |
| BseRI | GAGGAG | 2 cut(s) | 179, 281 |
| BseXI | GCAGC | 3 cut(s) | 258, 364, 388 |
| BsgI | GTGCAG | 1 cut(s) | 363 |
| BslFI | GGGAC | 1 cut(s) | 60 |
| BsmAI | GTCTC | 2 cut(s) | 104, 221 |
| BsmFI | GGGAC | 1 cut(s) | 60 |
| Bsp1407I | TGTACA | 1 cut(s) | 476 |
| Bsp143I | GATC | 1 cut(s) | 307 |
| BspACI | CCGC | 2 cut(s) | 66, 145 |
| BspCNI | CTCAG | 2 cut(s) | 324, 397 |
| BspLI | GGNNCC | 2 cut(s) | 37, 64 |
| BspMAI | CTGCAG | 1 cut(s) | 276 |
| BspPI | GGATC | 1 cut(s) | 315 |
| BsrGI | TGTACA | 1 cut(s) | 476 |
| BssECI | CCNNGG | 1 cut(s) | 31 |
| BssMI | GATC | 1 cut(s) | 307 |
| BssSI | CACGAG | 2 cut(s) | 50, 84 |
| BssT1I | CCWWGG | 1 cut(s) | 31 |
| Bst2BI | CACGAG | 2 cut(s) | 50, 84 |
| Bst4CI | ACNGT | 1 cut(s) | 98 |
| Bst6I | CTCTTC | 1 cut(s) | 120 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 398 |
| BstAUI | TGTACA | 1 cut(s) | 476 |
| BstC8I | GCNNGC | 1 cut(s) | 390 |
| BstDEI | CTNAG | 2 cut(s) | 311, 405 |
| BstKTI | GATC | 1 cut(s) | 310 |
| BstMAI | GTCTC | 2 cut(s) | 104, 221 |
| BstMBI | GATC | 1 cut(s) | 307 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 65, 374, 398 |
| BstSFI | CTRYAG | 1 cut(s) | 272 |
| BstV1I | GCAGC | 3 cut(s) | 258, 364, 388 |
| BstX2I | RGATCY | 1 cut(s) | 307 |
| BstYI | RGATCY | 1 cut(s) | 307 |
| BtsI | GCAGTG | 2 cut(s) | 189, 399 |
| BtsIMutI | CAGTG | 2 cut(s) | 189, 399 |
| Cac8I | GCNNGC | 1 cut(s) | 390 |
| Csp6I | GTAC | 1 cut(s) | 477 |
| CviAII | CATG | 2 cut(s) | 203, 353 |
| CviJI | RGCY | 7 cut(s) | 38, 65, 144, 208, 271, 368, 377 |
| CviKI_1 | RGCY | 7 cut(s) | 38, 65, 144, 208, 271, 368, 377 |
| CviQI | GTAC | 1 cut(s) | 477 |
| DdeI | CTNAG | 2 cut(s) | 311, 405 |
| DpnI | GATC | 1 cut(s) | 309 |
| DpnII | GATC | 1 cut(s) | 307 |
| DraIII | CACNNNGTG | 1 cut(s) | 86 |
| Eam1104I | CTCTTC | 1 cut(s) | 120 |
| EarI | CTCTTC | 1 cut(s) | 120 |
| Eco130I | CCWWGG | 1 cut(s) | 31 |
| EcoRI | GAATTC | 1 cut(s) | 277 |
| EcoT14I | CCWWGG | 1 cut(s) | 31 |
| ErhI | CCWWGG | 1 cut(s) | 31 |
| FaeI | CATG | 2 cut(s) | 206, 356 |
| FaqI | GGGAC | 1 cut(s) | 60 |
| FatI | CATG | 2 cut(s) | 202, 352 |
| FauNDI | CATATG | 1 cut(s) | 384 |
| FblI | GTMKAC | 1 cut(s) | 431 |
| Fnu4HI | GCNGC | 5 cut(s) | 66, 145, 272, 378, 402 |
| Fsp4HI | GCNGC | 5 cut(s) | 66, 145, 272, 378, 402 |
| FspBI | CTAG | 3 cut(s) | 141, 317, 357 |
| GluI | GCNGC | 5 cut(s) | 66, 145, 272, 378, 402 |
| GsuI | CTGGAG | 1 cut(s) | 81 |
| Hin1II | CATG | 2 cut(s) | 206, 356 |
| HinfI | GANTC | 3 cut(s) | 48, 407, 464 |
| HphI | GGTGA | 1 cut(s) | 88 |
| Hpy166II | GTNNAC | 2 cut(s) | 432, 479 |
| Hpy188I | TCNGA | 4 cut(s) | 314, 345, 412, 469 |
| Hpy188III | TCNNGA | 3 cut(s) | 92, 263, 452 |
| Hpy8I | GTNNAC | 2 cut(s) | 432, 479 |
| HpyAV | CCTTC | 2 cut(s) | 288, 354 |
| HpyCH4III | ACNGT | 1 cut(s) | 98 |
| HpyCH4IV | ACGT | 1 cut(s) | 106 |
| HpyCH4V | TGCA | 3 cut(s) | 274, 329, 380 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 65, 374, 398 |
| HpyF3I | CTNAG | 2 cut(s) | 311, 405 |
| HpySE526I | ACGT | 1 cut(s) | 106 |
| Hsp92II | CATG | 2 cut(s) | 206, 356 |
| Kzo9I | GATC | 1 cut(s) | 307 |
| LmnI | GCTCC | 3 cut(s) | 35, 62, 268 |
| LpnPI | CCDG | 3 cut(s) | 45, 315, 374 |
| Lsp1109I | GCAGC | 3 cut(s) | 258, 364, 388 |
| LweI | GCATC | 2 cut(s) | 316, 343 |
| MaeI | CTAG | 3 cut(s) | 141, 317, 357 |
| MaeII | ACGT | 1 cut(s) | 106 |
| MaeIII | GTNAC | 1 cut(s) | 76 |
| MalI | GATC | 1 cut(s) | 309 |
| MboI | GATC | 1 cut(s) | 307 |
| MboII | GAAGA | 2 cut(s) | 137, 273 |
| MfeI | CAATTG | 1 cut(s) | 254 |
| MflI | RGATCY | 1 cut(s) | 307 |
| MluCI | AATT | 4 cut(s) | 114, 254, 277, 459 |
| MlyI | GAGTC | 2 cut(s) | 42, 416 |
| MmeI | TCCRAC | 2 cut(s) | 89, 204 |
| MnlI | CCTC | 8 cut(s) | 67, 93, 157, 168, 172, 259, 298, 358 |
| MseI | TTAA | 1 cut(s) | 484 |
| MspA1I | CMGCKG | 1 cut(s) | 377 |
| MunI | CAATTG | 1 cut(s) | 254 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 65, 374, 398 |
| NdeI | CATATG | 1 cut(s) | 384 |
| NdeII | GATC | 1 cut(s) | 307 |
| NlaIII | CATG | 2 cut(s) | 206, 356 |
| NlaIV | GGNNCC | 2 cut(s) | 37, 64 |
| NmuCI | GTSAC | 1 cut(s) | 76 |
| PfeI | GAWTC | 1 cut(s) | 464 |
| PkrI | GCNGC | 5 cut(s) | 67, 146, 273, 379, 403 |
| PleI | GAGTC | 2 cut(s) | 42, 415 |
| PpsI | GAGTC | 2 cut(s) | 42, 415 |
| Psp1406I | AACGTT | 1 cut(s) | 106 |
| PspN4I | GGNNCC | 2 cut(s) | 37, 64 |
| PstI | CTGCAG | 1 cut(s) | 276 |
| PsuI | RGATCY | 1 cut(s) | 307 |
| PvuII | CAGCTG | 1 cut(s) | 377 |
| RsaI | GTAC | 1 cut(s) | 478 |
| RsaNI | GTAC | 1 cut(s) | 477 |
| SaqAI | TTAA | 1 cut(s) | 484 |
| SatI | GCNGC | 5 cut(s) | 66, 145, 272, 378, 402 |
| Sau3AI | GATC | 1 cut(s) | 307 |
| SchI | GAGTC | 2 cut(s) | 42, 416 |
| SetI | ASST | 7 cut(s) | 78, 85, 109, 273, 299, 379, 484 |
| SfaNI | GCATC | 2 cut(s) | 316, 343 |
| SfcI | CTRYAG | 1 cut(s) | 272 |
| Sse9I | AATT | 4 cut(s) | 114, 254, 277, 459 |
| SsiI | CCGC | 2 cut(s) | 66, 145 |
| SspMI | CTAG | 3 cut(s) | 141, 317, 357 |
| StyI | CCWWGG | 1 cut(s) | 31 |
| TaaI | ACNGT | 1 cut(s) | 98 |
| TaiI | ACGT | 1 cut(s) | 109 |
| TasI | AATT | 4 cut(s) | 114, 254, 277, 459 |
| TatI | WGTACW | 1 cut(s) | 476 |
| TauI | GCSGC | 2 cut(s) | 68, 147 |
| TfiI | GAWTC | 1 cut(s) | 464 |
| Tru1I | TTAA | 1 cut(s) | 484 |
| Tru9I | TTAA | 1 cut(s) | 484 |
| TscAI | CASTG | 2 cut(s) | 189, 399 |
| TseFI | GTSAC | 1 cut(s) | 76 |
| TseI | GCWGC | 3 cut(s) | 271, 377, 401 |
| Tsp45I | GTSAC | 1 cut(s) | 76 |
| TspDTI | ATGAA | 2 cut(s) | 138, 341 |
| TspRI | CASTG | 2 cut(s) | 189, 399 |
| XapI | RAATTY | 1 cut(s) | 277 |
| XmiI | GTMKAC | 1 cut(s) | 431 |
| XspI | CTAG | 3 cut(s) | 141, 317, 357 |