Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 933, 1853 |
| Acc36I | ACCTGC | 2 cut(s) | 533, 1609 |
| AciI | CCGC | 3 cut(s) | 203, 537, 796 |
| AclWI | GGATC | 4 cut(s) | 86, 920, 1483, 1595 |
| AcsI | RAATTY | 4 cut(s) | 552, 687, 814, 1847 |
| AcuI | CTGAAG | 1 cut(s) | 279 |
| AfaI | GTAC | 2 cut(s) | 1039, 1623 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 74, 657 |
| AflII | CTTAAG | 1 cut(s) | 1804 |
| AgsI | TTSAA | 8 cut(s) | 14, 176, 487, 1354, 1514, 1631, 1655, 1668 |
| AhlI | ACTAGT | 2 cut(s) | 5, 1717 |
| Alw26I | GTCTC | 3 cut(s) | 626, 1294, 1381 |
| AlwI | GGATC | 4 cut(s) | 86, 920, 1483, 1595 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1624 |
| Ama87I | CYCGRG | 1 cut(s) | 72 |
| AoxI | GGCC | 1 cut(s) | 1169 |
| ApeKI | GCWGC | 6 cut(s) | 251, 470, 802, 1159, 1523, 1723 |
| ApoI | RAATTY | 4 cut(s) | 552, 687, 814, 1847 |
| AseI | ATTAAT | 1 cut(s) | 1749 |
| AspLEI | GCGC | 1 cut(s) | 251 |
| AspS9I | GGNCC | 1 cut(s) | 1169 |
| AsuC2I | CCSGG | 2 cut(s) | 53, 1173 |
| AsuHPI | GGTGA | 5 cut(s) | 93, 101, 872, 1408, 1438 |
| AsuII | TTCGAA | 1 cut(s) | 1867 |
| AvaI | CYCGRG | 1 cut(s) | 72 |
| BauI | CACGAG | 1 cut(s) | 879 |
| BbsI | GAAGAC | 2 cut(s) | 129, 1004 |
| BbvI | GCAGC | 6 cut(s) | 238, 457, 789, 1146, 1510, 1710 |
| BccI | CCATC | 4 cut(s) | 76, 1054, 1436, 1564 |
| BcnI | CCSGG | 2 cut(s) | 53, 1173 |
| BcoDI | GTCTC | 3 cut(s) | 626, 1294, 1381 |
| BcuI | ACTAGT | 2 cut(s) | 5, 1717 |
| BfaI | CTAG | 6 cut(s) | 6, 828, 972, 1236, 1527, 1718 |
| BfmI | CTRYAG | 2 cut(s) | 329, 803 |
| BfoI | RGCGCY | 1 cut(s) | 252 |
| BfrI | CTTAAG | 1 cut(s) | 1804 |
| BfuAI | ACCTGC | 2 cut(s) | 533, 1609 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1168 |
| BglII | AGATCT | 1 cut(s) | 698 |
| BisI | GCNGC | 6 cut(s) | 252, 471, 803, 1160, 1524, 1724 |
| BlsI | GCNGC | 6 cut(s) | 253, 472, 804, 1161, 1525, 1725 |
| BmcAI | AGTACT | 1 cut(s) | 1039 |
| Bme1390I | CCNGG | 2 cut(s) | 53, 1173 |
| BmeT110I | CYCGRG | 1 cut(s) | 72 |
| BmgT120I | GGNCC | 1 cut(s) | 1169 |
| BmrFI | CCNGG | 2 cut(s) | 53, 1173 |
| BmrI | ACTGGG | 1 cut(s) | 1176 |
| BmsI | GCATC | 9 cut(s) | 189, 220, 646, 853, 949, 1236, 1319, 1486, 1849 |
| BmuI | ACTGGG | 1 cut(s) | 1176 |
| BpiI | GAAGAC | 2 cut(s) | 129, 1004 |
| BpmI | CTGGAG | 3 cut(s) | 538, 715, 1500 |
| Bpu14I | TTCGAA | 1 cut(s) | 1867 |
| BpuMI | CCSGG | 2 cut(s) | 53, 1173 |
| BsaBI | GATNNNNATC | 2 cut(s) | 636, 1878 |
| BsaI | GGTCTC | 1 cut(s) | 626 |
| BsaJI | CCNNGG | 2 cut(s) | 52, 397 |
| BsaWI | WCCGGW | 1 cut(s) | 1675 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 74, 657 |
| Bse118I | RCCGGY | 2 cut(s) | 650, 1456 |
| Bse1I | ACTGG | 2 cut(s) | 698, 1171 |
| Bse3DI | GCAATG | 1 cut(s) | 346 |
| Bse8I | GATNNNNATC | 2 cut(s) | 636, 1878 |
| BseDI | CCNNGG | 2 cut(s) | 52, 397 |
| BseGI | GGATG | 2 cut(s) | 964, 1864 |
| BseJI | GATNNNNATC | 2 cut(s) | 636, 1878 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 74, 657 |
| BseMI | GCAATG | 1 cut(s) | 346 |
| BseMII | CTCAG | 1 cut(s) | 1305 |
| BseNI | ACTGG | 2 cut(s) | 698, 1171 |
| BseRI | GAGGAG | 2 cut(s) | 689, 1361 |
| BseXI | GCAGC | 6 cut(s) | 238, 457, 789, 1146, 1510, 1710 |
| BsgI | GTGCAG | 3 cut(s) | 183, 561, 1388 |
| BshFI | GGCC | 1 cut(s) | 1171 |
| BsiHKCI | CYCGRG | 1 cut(s) | 72 |
| BsiSI | CCGG | 5 cut(s) | 52, 651, 1172, 1457, 1676 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 74, 657 |
| BsmAI | GTCTC | 3 cut(s) | 626, 1294, 1381 |
| BsmI | GAATGC | 1 cut(s) | 1663 |
| BsnI | GGCC | 1 cut(s) | 1171 |
| Bso31I | GGTCTC | 1 cut(s) | 626 |
| BsoBI | CYCGRG | 1 cut(s) | 72 |
| Bsp119I | TTCGAA | 1 cut(s) | 1867 |
| Bsp143I | GATC | 7 cut(s) | 91, 458, 698, 925, 1488, 1587, 1710 |
| BspACI | CCGC | 3 cut(s) | 203, 537, 796 |
| BspANI | GGCC | 1 cut(s) | 1171 |
| BspCNI | CTCAG | 1 cut(s) | 1306 |
| BspMAI | CTGCAG | 1 cut(s) | 807 |
| BspMI | ACCTGC | 2 cut(s) | 533, 1609 |
| BspPI | GGATC | 4 cut(s) | 86, 920, 1483, 1595 |
| BspT104I | TTCGAA | 1 cut(s) | 1867 |
| BspTI | CTTAAG | 1 cut(s) | 1804 |
| BspTNI | GGTCTC | 1 cut(s) | 626 |
| BsrDI | GCAATG | 1 cut(s) | 346 |
| BsrFI | RCCGGY | 2 cut(s) | 650, 1456 |
| BsrI | ACTGG | 2 cut(s) | 698, 1171 |
| BssAI | RCCGGY | 2 cut(s) | 650, 1456 |
| BssECI | CCNNGG | 2 cut(s) | 52, 397 |
| BssMI | GATC | 7 cut(s) | 91, 458, 698, 925, 1488, 1587, 1710 |
| BssSI | CACGAG | 1 cut(s) | 879 |
| BssT1I | CCWWGG | 1 cut(s) | 397 |
| Bst2BI | CACGAG | 1 cut(s) | 879 |
| Bst4CI | ACNGT | 7 cut(s) | 19, 580, 711, 1003, 1280, 1626, 1777 |
| Bst6I | CTCTTC | 1 cut(s) | 255 |
| BstAFI | CTTAAG | 1 cut(s) | 1804 |
| BstBI | TTCGAA | 1 cut(s) | 1867 |
| BstC8I | GCNNGC | 4 cut(s) | 440, 1100, 1308, 1458 |
| BstDEI | CTNAG | 3 cut(s) | 34, 723, 1314 |
| BstF5I | GGATG | 2 cut(s) | 964, 1864 |
| BstH2I | RGCGCY | 1 cut(s) | 252 |
| BstHHI | GCGC | 1 cut(s) | 251 |
| BstKTI | GATC | 7 cut(s) | 94, 461, 701, 928, 1491, 1590, 1713 |
| BstMAI | GTCTC | 3 cut(s) | 626, 1294, 1381 |
| BstMBI | GATC | 7 cut(s) | 91, 458, 698, 925, 1488, 1587, 1710 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 476, 779, 802, 989, 1168, 1316, 1505, 1799 |
| BstNSI | RCATGY | 3 cut(s) | 992, 1106, 1310 |
| BstSCI | CCNGG | 2 cut(s) | 51, 1171 |
| BstSFI | CTRYAG | 2 cut(s) | 329, 803 |
| BstV1I | GCAGC | 6 cut(s) | 238, 457, 789, 1146, 1510, 1710 |
| BstV2I | GAAGAC | 2 cut(s) | 129, 1004 |
| BstX2I | RGATCY | 1 cut(s) | 698 |
| BstYI | RGATCY | 1 cut(s) | 698 |
| BsuRI | GGCC | 1 cut(s) | 1171 |
| BtgZI | GCGATG | 1 cut(s) | 1533 |
| BtsCI | GGATG | 2 cut(s) | 964, 1864 |
| BtsI | GCAGTG | 2 cut(s) | 945, 1605 |
| BtsIMutI | CAGTG | 3 cut(s) | 691, 945, 1605 |
| BveI | ACCTGC | 2 cut(s) | 533, 1609 |
| Cac8I | GCNNGC | 4 cut(s) | 440, 1100, 1308, 1458 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1624 |
| CfoI | GCGC | 1 cut(s) | 251 |
| Cfr10I | RCCGGY | 2 cut(s) | 650, 1456 |
| Cfr13I | GGNCC | 1 cut(s) | 1169 |
| Csp6I | GTAC | 2 cut(s) | 1038, 1622 |
| CviQI | GTAC | 2 cut(s) | 1038, 1622 |
| DdeI | CTNAG | 3 cut(s) | 34, 723, 1314 |
| DpnI | GATC | 7 cut(s) | 93, 460, 700, 927, 1490, 1589, 1712 |
| DpnII | GATC | 7 cut(s) | 91, 458, 698, 925, 1488, 1587, 1710 |
| Eam1104I | CTCTTC | 1 cut(s) | 255 |
| EarI | CTCTTC | 1 cut(s) | 255 |
| Eco130I | CCWWGG | 1 cut(s) | 397 |
| Eco31I | GGTCTC | 1 cut(s) | 626 |
| Eco32I | GATATC | 1 cut(s) | 394 |
| Eco57I | CTGAAG | 1 cut(s) | 279 |
| Eco88I | CYCGRG | 1 cut(s) | 72 |
| EcoRV | GATATC | 1 cut(s) | 394 |
| EcoT14I | CCWWGG | 1 cut(s) | 397 |
| EcoT22I | ATGCAT | 4 cut(s) | 639, 868, 994, 1312 |
| ErhI | CCWWGG | 1 cut(s) | 397 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 480, 512 |
| FauNDI | CATATG | 1 cut(s) | 1123 |
| Fnu4HI | GCNGC | 6 cut(s) | 252, 471, 803, 1160, 1524, 1724 |
| FokI | GGATG | 2 cut(s) | 971, 1871 |
| Fsp4HI | GCNGC | 6 cut(s) | 252, 471, 803, 1160, 1524, 1724 |
| FspBI | CTAG | 6 cut(s) | 6, 828, 972, 1236, 1527, 1718 |
| GlaI | GCGC | 1 cut(s) | 250 |
| GluI | GCNGC | 6 cut(s) | 252, 471, 803, 1160, 1524, 1724 |
| GsuI | CTGGAG | 3 cut(s) | 538, 715, 1500 |
| HaeII | RGCGCY | 1 cut(s) | 252 |
| HaeIII | GGCC | 1 cut(s) | 1171 |
| HapII | CCGG | 5 cut(s) | 52, 651, 1172, 1457, 1676 |
| HhaI | GCGC | 1 cut(s) | 251 |
| Hin6I | GCGC | 1 cut(s) | 249 |
| HinP1I | GCGC | 1 cut(s) | 249 |
| HincII | GTYRAC | 1 cut(s) | 1374 |
| HindII | GTYRAC | 1 cut(s) | 1374 |
| HindIII | AAGCTT | 1 cut(s) | 1656 |
| HinfI | GANTC | 4 cut(s) | 172, 668, 808, 1631 |
| HpaII | CCGG | 5 cut(s) | 52, 651, 1172, 1457, 1676 |
| HphI | GGTGA | 5 cut(s) | 93, 101, 872, 1408, 1438 |
| Hpy166II | GTNNAC | 2 cut(s) | 1154, 1374 |
| Hpy188I | TCNGA | 7 cut(s) | 144, 281, 673, 1315, 1493, 1636, 1715 |
| Hpy188III | TCNNGA | 2 cut(s) | 881, 1844 |
| Hpy8I | GTNNAC | 2 cut(s) | 1154, 1374 |
| HpyAV | CCTTC | 5 cut(s) | 40, 721, 940, 1423, 1577 |
| HpyCH4III | ACNGT | 7 cut(s) | 19, 580, 711, 1003, 1280, 1626, 1777 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 476, 779, 802, 989, 1168, 1316, 1505, 1799 |
| HpyF3I | CTNAG | 3 cut(s) | 34, 723, 1314 |
| HspAI | GCGC | 1 cut(s) | 249 |
| KroI | GCCGGC | 1 cut(s) | 1456 |
| KroNI | GCCGGC | 1 cut(s) | 1458 |
| Kzo9I | GATC | 7 cut(s) | 91, 458, 698, 925, 1488, 1587, 1710 |
| LmnI | GCTCC | 3 cut(s) | 615, 1225, 1846 |
| Lsp1109I | GCAGC | 6 cut(s) | 238, 457, 789, 1146, 1510, 1710 |
| LweI | GCATC | 9 cut(s) | 189, 220, 646, 853, 949, 1236, 1319, 1486, 1849 |
| MaeI | CTAG | 6 cut(s) | 6, 828, 972, 1236, 1527, 1718 |
| MaeIII | GTNAC | 3 cut(s) | 99, 187, 1543 |
| MalI | GATC | 7 cut(s) | 93, 460, 700, 927, 1490, 1589, 1712 |
| MboI | GATC | 7 cut(s) | 91, 458, 698, 925, 1488, 1587, 1710 |
| MboII | GAAGA | 5 cut(s) | 129, 272, 468, 1007, 1009 |
| MfeI | CAATTG | 1 cut(s) | 377 |
| MflI | RGATCY | 1 cut(s) | 698 |
| MmeI | TCCRAC | 1 cut(s) | 433 |
| MnlI | CCTC | 6 cut(s) | 256, 667, 724, 1089, 1309, 1339 |
| Mph1103I | ATGCAT | 4 cut(s) | 639, 868, 994, 1312 |
| MroNI | GCCGGC | 1 cut(s) | 1456 |
| MspA1I | CMGCKG | 3 cut(s) | 470, 516, 1159 |
| MspCI | CTTAAG | 1 cut(s) | 1804 |
| MspI | CCGG | 5 cut(s) | 52, 651, 1172, 1457, 1676 |
| MspR9I | CCNGG | 2 cut(s) | 53, 1173 |
| MunI | CAATTG | 1 cut(s) | 377 |
| Mva1269I | GAATGC | 1 cut(s) | 1663 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 476, 779, 802, 989, 1168, 1316, 1505, 1799 |
| NaeI | GCCGGC | 1 cut(s) | 1458 |
| NciI | CCSGG | 2 cut(s) | 53, 1173 |
| NdeI | CATATG | 1 cut(s) | 1123 |
| NdeII | GATC | 7 cut(s) | 91, 458, 698, 925, 1488, 1587, 1710 |
| NgoMIV | GCCGGC | 1 cut(s) | 1456 |
| NmuCI | GTSAC | 1 cut(s) | 99 |
| NsiI | ATGCAT | 4 cut(s) | 639, 868, 994, 1312 |
| NspI | RCATGY | 3 cut(s) | 992, 1106, 1310 |
| NspV | TTCGAA | 1 cut(s) | 1867 |
| PaeI | GCATGC | 1 cut(s) | 1310 |
| PctI | GAATGC | 1 cut(s) | 1663 |
| PdiI | GCCGGC | 1 cut(s) | 1458 |
| PfeI | GAWTC | 4 cut(s) | 172, 668, 808, 1631 |
| PkrI | GCNGC | 6 cut(s) | 253, 472, 804, 1161, 1525, 1725 |
| PshBI | ATTAAT | 1 cut(s) | 1749 |
| PsiI | TTATAA | 2 cut(s) | 933, 1853 |
| PspPI | GGNCC | 1 cut(s) | 1169 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1334, 1366 |
| PstI | CTGCAG | 1 cut(s) | 807 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1624 |
| PsuI | RGATCY | 1 cut(s) | 698 |
| PvuII | CAGCTG | 3 cut(s) | 470, 516, 1159 |
| RsaI | GTAC | 2 cut(s) | 1039, 1623 |
| RsaNI | GTAC | 2 cut(s) | 1038, 1622 |
| SatI | GCNGC | 6 cut(s) | 252, 471, 803, 1160, 1524, 1724 |
| Sau3AI | GATC | 7 cut(s) | 91, 458, 698, 925, 1488, 1587, 1710 |
| Sau96I | GGNCC | 1 cut(s) | 1169 |
| ScaI | AGTACT | 1 cut(s) | 1039 |
| ScrFI | CCNGG | 2 cut(s) | 53, 1173 |
| SfaNI | GCATC | 9 cut(s) | 189, 220, 646, 853, 949, 1236, 1319, 1486, 1849 |
| SfcI | CTRYAG | 2 cut(s) | 329, 803 |
| SfuI | TTCGAA | 1 cut(s) | 1867 |
| SmlI | CTYRAG | 1 cut(s) | 1804 |
| SmoI | CTYRAG | 1 cut(s) | 1804 |
| SpeI | ACTAGT | 2 cut(s) | 5, 1717 |
| SphI | GCATGC | 1 cut(s) | 1310 |
| SsiI | CCGC | 3 cut(s) | 203, 537, 796 |
| SspI | AATATT | 2 cut(s) | 286, 1012 |
| SspMI | CTAG | 6 cut(s) | 6, 828, 972, 1236, 1527, 1718 |
| StyD4I | CCNGG | 2 cut(s) | 51, 1171 |
| StyI | CCWWGG | 1 cut(s) | 397 |
| TaaI | ACNGT | 7 cut(s) | 19, 580, 711, 1003, 1280, 1626, 1777 |
| TaqI | TCGA | 2 cut(s) | 64, 1867 |
| TatI | WGTACW | 1 cut(s) | 1037 |
| TfiI | GAWTC | 4 cut(s) | 172, 668, 808, 1631 |
| TscAI | CASTG | 3 cut(s) | 698, 945, 1605 |
| TseFI | GTSAC | 1 cut(s) | 99 |
| TseI | GCWGC | 6 cut(s) | 251, 470, 802, 1159, 1523, 1723 |
| Tsp45I | GTSAC | 1 cut(s) | 99 |
| TspDTI | ATGAA | 2 cut(s) | 611, 807 |
| TspGWI | ACGGA | 1 cut(s) | 1391 |
| TspRI | CASTG | 3 cut(s) | 698, 945, 1605 |
| Vha464I | CTTAAG | 1 cut(s) | 1804 |
| VspI | ATTAAT | 1 cut(s) | 1749 |
| XapI | RAATTY | 4 cut(s) | 552, 687, 814, 1847 |
| XceI | RCATGY | 3 cut(s) | 992, 1106, 1310 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1419, 1829 |
| XspI | CTAG | 6 cut(s) | 6, 828, 972, 1236, 1527, 1718 |
| ZrmI | AGTACT | 1 cut(s) | 1039 |
| Zsp2I | ATGCAT | 4 cut(s) | 639, 868, 994, 1312 |