Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 211, 634 |
| AccB1I | GGYRCC | 1 cut(s) | 582 |
| AciI | CCGC | 1 cut(s) | 212 |
| AcuI | CTGAAG | 1 cut(s) | 687 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 81, 327, 378, 586, 592, 593, 619 |
| AgsI | TTSAA | 2 cut(s) | 200, 243 |
| AluBI | AGCT | 4 cut(s) | 8, 227, 398, 469 |
| AluI | AGCT | 4 cut(s) | 8, 227, 398, 469 |
| Ama87I | CYCGRG | 1 cut(s) | 586 |
| AoxI | GGCC | 2 cut(s) | 92, 621 |
| ApeKI | GCWGC | 3 cut(s) | 176, 368, 395 |
| AspS9I | GGNCC | 1 cut(s) | 72 |
| AsuC2I | CCSGG | 3 cut(s) | 408, 587, 588 |
| AsuHPI | GGTGA | 1 cut(s) | 59 |
| AsuNHI | GCTAGC | 1 cut(s) | 608 |
| AvaI | CYCGRG | 1 cut(s) | 586 |
| AvaII | GGWCC | 1 cut(s) | 72 |
| BaeGI | GKGCMC | 1 cut(s) | 587 |
| BanI | GGYRCC | 1 cut(s) | 582 |
| BbvI | GCAGC | 3 cut(s) | 163, 355, 407 |
| BccI | CCATC | 2 cut(s) | 30, 44 |
| BciVI | GTATCC | 1 cut(s) | 78 |
| BcnI | CCSGG | 3 cut(s) | 408, 587, 588 |
| BfaI | CTAG | 5 cut(s) | 224, 254, 354, 609, 700 |
| BfuAI | ACCTGC | 2 cut(s) | 211, 634 |
| BfuI | GTATCC | 1 cut(s) | 78 |
| BglII | AGATCT | 1 cut(s) | 670 |
| BisI | GCNGC | 3 cut(s) | 177, 369, 396 |
| BlsI | GCNGC | 3 cut(s) | 178, 370, 397 |
| Bme1390I | CCNGG | 3 cut(s) | 408, 587, 588 |
| Bme18I | GGWCC | 1 cut(s) | 72 |
| BmeT110I | CYCGRG | 1 cut(s) | 586 |
| BmgT120I | GGNCC | 1 cut(s) | 72 |
| BmiI | GGNNCC | 1 cut(s) | 584 |
| BmrFI | CCNGG | 3 cut(s) | 408, 587, 588 |
| BmsI | GCATC | 3 cut(s) | 163, 199, 268 |
| BmtI | GCTAGC | 1 cut(s) | 612 |
| BpuEI | CTTGAG | 2 cut(s) | 256, 300 |
| BpuMI | CCSGG | 3 cut(s) | 408, 587, 588 |
| BsaJI | CCNNGG | 4 cut(s) | 80, 89, 586, 587 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 81, 327, 378, 586, 592, 593, 619 |
| Bse118I | RCCGGY | 1 cut(s) | 579 |
| Bse1I | ACTGG | 1 cut(s) | 332 |
| BseDI | CCNNGG | 4 cut(s) | 80, 89, 586, 587 |
| BseGI | GGATG | 2 cut(s) | 178, 529 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 81, 327, 378, 586, 592, 593, 619 |
| BseMII | CTCAG | 2 cut(s) | 479, 609 |
| BseNI | ACTGG | 1 cut(s) | 332 |
| BseSI | GKGCMC | 1 cut(s) | 587 |
| BseXI | GCAGC | 3 cut(s) | 163, 355, 407 |
| BsgI | GTGCAG | 1 cut(s) | 162 |
| Bsh1285I | CGRYCG | 1 cut(s) | 122 |
| BshFI | GGCC | 2 cut(s) | 94, 623 |
| BshNI | GGYRCC | 1 cut(s) | 582 |
| BsiEI | CGRYCG | 1 cut(s) | 122 |
| BsiHKCI | CYCGRG | 1 cut(s) | 586 |
| BsiSI | CCGG | 3 cut(s) | 407, 580, 587 |
| BslFI | GGGAC | 1 cut(s) | 540 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 81, 327, 378, 586, 592, 593, 619 |
| BsmFI | GGGAC | 1 cut(s) | 540 |
| BsnI | GGCC | 2 cut(s) | 94, 623 |
| BsoBI | CYCGRG | 1 cut(s) | 586 |
| Bsp1286I | GDGCHC | 1 cut(s) | 587 |
| Bsp143I | GATC | 1 cut(s) | 670 |
| BspACI | CCGC | 1 cut(s) | 212 |
| BspANI | GGCC | 2 cut(s) | 94, 623 |
| BspCNI | CTCAG | 2 cut(s) | 478, 610 |
| BspLI | GGNNCC | 1 cut(s) | 584 |
| BspMI | ACCTGC | 2 cut(s) | 211, 634 |
| BspOI | GCTAGC | 1 cut(s) | 612 |
| BspQI | GCTCTTC | 1 cut(s) | 448 |
| BspT107I | GGYRCC | 1 cut(s) | 582 |
| BsrFI | RCCGGY | 1 cut(s) | 579 |
| BsrI | ACTGG | 1 cut(s) | 332 |
| BssAI | RCCGGY | 1 cut(s) | 579 |
| BssECI | CCNNGG | 4 cut(s) | 80, 89, 586, 587 |
| BssMI | GATC | 1 cut(s) | 670 |
| BssT1I | CCWWGG | 1 cut(s) | 80 |
| Bst6I | CTCTTC | 2 cut(s) | 448, 687 |
| BstC8I | GCNNGC | 1 cut(s) | 610 |
| BstDEI | CTNAG | 2 cut(s) | 465, 618 |
| BstF5I | GGATG | 2 cut(s) | 178, 529 |
| BstKTI | GATC | 1 cut(s) | 673 |
| BstMBI | GATC | 1 cut(s) | 670 |
| BstMCI | CGRYCG | 1 cut(s) | 122 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 268 |
| BstNSI | RCATGY | 2 cut(s) | 485, 542 |
| BstSCI | CCNGG | 3 cut(s) | 406, 585, 586 |
| BstSLI | GKGCMC | 1 cut(s) | 587 |
| BstV1I | GCAGC | 3 cut(s) | 163, 355, 407 |
| BstX2I | RGATCY | 1 cut(s) | 670 |
| BstYI | RGATCY | 1 cut(s) | 670 |
| BsuI | GTATCC | 1 cut(s) | 78 |
| BsuRI | GGCC | 2 cut(s) | 94, 623 |
| BtsCI | GGATG | 2 cut(s) | 178, 529 |
| BveI | ACCTGC | 2 cut(s) | 211, 634 |
| Cac8I | GCNNGC | 1 cut(s) | 610 |
| Cfr10I | RCCGGY | 1 cut(s) | 579 |
| Cfr13I | GGNCC | 1 cut(s) | 72 |
| Cfr9I | CCCGGG | 1 cut(s) | 586 |
| CviAII | CATG | 3 cut(s) | 482, 539, 627 |
| DdeI | CTNAG | 2 cut(s) | 465, 618 |
| DpnI | GATC | 1 cut(s) | 672 |
| DpnII | GATC | 1 cut(s) | 670 |
| Eam1104I | CTCTTC | 2 cut(s) | 448, 687 |
| EarI | CTCTTC | 2 cut(s) | 448, 687 |
| Eco130I | CCWWGG | 1 cut(s) | 80 |
| Eco147I | AGGCCT | 1 cut(s) | 623 |
| Eco47I | GGWCC | 1 cut(s) | 72 |
| Eco57I | CTGAAG | 1 cut(s) | 687 |
| Eco88I | CYCGRG | 1 cut(s) | 586 |
| EcoT14I | CCWWGG | 1 cut(s) | 80 |
| ErhI | CCWWGG | 1 cut(s) | 80 |
| FaeI | CATG | 3 cut(s) | 485, 542, 630 |
| FaqI | GGGAC | 1 cut(s) | 540 |
| FatI | CATG | 3 cut(s) | 481, 538, 626 |
| Fnu4HI | GCNGC | 3 cut(s) | 177, 369, 396 |
| FokI | GGATG | 2 cut(s) | 185, 536 |
| Fsp4HI | GCNGC | 3 cut(s) | 177, 369, 396 |
| FspBI | CTAG | 5 cut(s) | 224, 254, 354, 609, 700 |
| GluI | GCNGC | 3 cut(s) | 177, 369, 396 |
| HaeIII | GGCC | 2 cut(s) | 94, 623 |
| HapII | CCGG | 3 cut(s) | 407, 580, 587 |
| Hin1II | CATG | 3 cut(s) | 485, 542, 630 |
| HinfI | GANTC | 4 cut(s) | 362, 527, 656, 696 |
| HpaII | CCGG | 3 cut(s) | 407, 580, 587 |
| HphI | GGTGA | 1 cut(s) | 59 |
| Hpy166II | GTNNAC | 1 cut(s) | 110 |
| Hpy188I | TCNGA | 4 cut(s) | 76, 619, 655, 667 |
| Hpy188III | TCNNGA | 1 cut(s) | 64 |
| Hpy8I | GTNNAC | 1 cut(s) | 110 |
| HpyAV | CCTTC | 1 cut(s) | 105 |
| HpyCH4V | TGCA | 3 cut(s) | 179, 424, 643 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 268 |
| HpyF3I | CTNAG | 2 cut(s) | 465, 618 |
| Hsp92II | CATG | 3 cut(s) | 485, 542, 630 |
| Kzo9I | GATC | 1 cut(s) | 670 |
| LguI | GCTCTTC | 1 cut(s) | 448 |
| LpnPI | CCDG | 7 cut(s) | 216, 313, 354, 420, 593, 600, 629 |
| Lsp1109I | GCAGC | 3 cut(s) | 163, 355, 407 |
| LweI | GCATC | 3 cut(s) | 163, 199, 268 |
| MaeI | CTAG | 5 cut(s) | 224, 254, 354, 609, 700 |
| MaeIII | GTNAC | 3 cut(s) | 133, 146, 512 |
| MalI | GATC | 1 cut(s) | 672 |
| MboI | GATC | 1 cut(s) | 670 |
| MboII | GAAGA | 3 cut(s) | 435, 674, 680 |
| MflI | RGATCY | 1 cut(s) | 670 |
| MhlI | GDGCHC | 1 cut(s) | 587 |
| MluCI | AATT | 4 cut(s) | 55, 153, 160, 215 |
| MlyI | GAGTC | 1 cut(s) | 536 |
| MmeI | TCCRAC | 1 cut(s) | 99 |
| MnlI | CCTC | 7 cut(s) | 18, 99, 487, 514, 590, 613, 634 |
| MseI | TTAA | 5 cut(s) | 152, 159, 324, 417, 564 |
| MslI | CAYNNNNRTG | 1 cut(s) | 276 |
| MspI | CCGG | 3 cut(s) | 407, 580, 587 |
| MspR9I | CCNGG | 3 cut(s) | 408, 587, 588 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 268 |
| NciI | CCSGG | 3 cut(s) | 408, 587, 588 |
| NdeII | GATC | 1 cut(s) | 670 |
| NheI | GCTAGC | 1 cut(s) | 608 |
| NlaIII | CATG | 3 cut(s) | 485, 542, 630 |
| NlaIV | GGNNCC | 1 cut(s) | 584 |
| NmeAIII | GCCGAG | 2 cut(s) | 70, 572 |
| NmuCI | GTSAC | 2 cut(s) | 133, 146 |
| NspI | RCATGY | 2 cut(s) | 485, 542 |
| PceI | AGGCCT | 1 cut(s) | 623 |
| PciSI | GCTCTTC | 1 cut(s) | 448 |
| PfeI | GAWTC | 3 cut(s) | 362, 656, 696 |
| PkrI | GCNGC | 3 cut(s) | 178, 370, 397 |
| PleI | GAGTC | 1 cut(s) | 535 |
| PpsI | GAGTC | 1 cut(s) | 535 |
| PspN4I | GGNNCC | 1 cut(s) | 584 |
| PspPI | GGNCC | 1 cut(s) | 72 |
| PsuI | RGATCY | 1 cut(s) | 670 |
| RseI | CAYNNNNRTG | 1 cut(s) | 276 |
| SapI | GCTCTTC | 1 cut(s) | 448 |
| SaqAI | TTAA | 5 cut(s) | 152, 159, 324, 417, 564 |
| SatI | GCNGC | 3 cut(s) | 177, 369, 396 |
| Sau3AI | GATC | 1 cut(s) | 670 |
| Sau96I | GGNCC | 1 cut(s) | 72 |
| SchI | GAGTC | 1 cut(s) | 536 |
| ScrFI | CCNGG | 3 cut(s) | 408, 587, 588 |
| SduI | GDGCHC | 1 cut(s) | 587 |
| SfaNI | GCATC | 3 cut(s) | 163, 199, 268 |
| SinI | GGWCC | 1 cut(s) | 72 |
| SmaI | CCCGGG | 1 cut(s) | 588 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 276 |
| SmlI | CTYRAG | 2 cut(s) | 235, 315 |
| SmoI | CTYRAG | 2 cut(s) | 235, 315 |
| Sse9I | AATT | 4 cut(s) | 55, 153, 160, 215 |
| SseBI | AGGCCT | 1 cut(s) | 623 |
| SsiI | CCGC | 1 cut(s) | 212 |
| SspI | AATATT | 1 cut(s) | 193 |
| SspMI | CTAG | 5 cut(s) | 224, 254, 354, 609, 700 |
| StuI | AGGCCT | 1 cut(s) | 623 |
| StyD4I | CCNGG | 3 cut(s) | 406, 585, 586 |
| StyI | CCWWGG | 1 cut(s) | 80 |
| TaqI | TCGA | 1 cut(s) | 118 |
| TaqII | GACCGA | 1 cut(s) | 136 |
| TasI | AATT | 4 cut(s) | 55, 153, 160, 215 |
| TfiI | GAWTC | 3 cut(s) | 362, 656, 696 |
| Tru1I | TTAA | 5 cut(s) | 152, 159, 324, 417, 564 |
| Tru9I | TTAA | 5 cut(s) | 152, 159, 324, 417, 564 |
| TseFI | GTSAC | 2 cut(s) | 133, 146 |
| TseI | GCWGC | 3 cut(s) | 176, 368, 395 |
| Tsp45I | GTSAC | 2 cut(s) | 133, 146 |
| TspDTI | ATGAA | 1 cut(s) | 461 |
| TspMI | CCCGGG | 1 cut(s) | 586 |
| VpaK11BI | GGWCC | 1 cut(s) | 72 |
| XceI | RCATGY | 2 cut(s) | 485, 542 |
| XmaI | CCCGGG | 1 cut(s) | 586 |
| XspI | CTAG | 5 cut(s) | 224, 254, 354, 609, 700 |