Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 43 - 110 | 3.2e-17 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 157 |
| AccB1I | GGYRCC | 1 cut(s) | 157 |
| AccBSI | CCGCTC | 1 cut(s) | 369 |
| AciI | CCGC | 1 cut(s) | 367 |
| AclWI | GGATC | 2 cut(s) | 12, 423 |
| AcsI | RAATTY | 1 cut(s) | 220 |
| AfaI | GTAC | 1 cut(s) | 159 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 124, 277 |
| AgsI | TTSAA | 4 cut(s) | 25, 178, 232, 412 |
| AluBI | AGCT | 1 cut(s) | 228 |
| AluI | AGCT | 1 cut(s) | 228 |
| AlwI | GGATC | 2 cut(s) | 12, 423 |
| AoxI | GGCC | 1 cut(s) | 171 |
| ApeKI | GCWGC | 1 cut(s) | 194 |
| ApoI | RAATTY | 1 cut(s) | 220 |
| AseI | ATTAAT | 1 cut(s) | 303 |
| Asp718I | GGTACC | 1 cut(s) | 157 |
| AspS9I | GGNCC | 1 cut(s) | 330 |
| AsuC2I | CCSGG | 1 cut(s) | 162 |
| AsuHPI | GGTGA | 2 cut(s) | 257, 395 |
| AvaII | GGWCC | 1 cut(s) | 330 |
| BanI | GGYRCC | 1 cut(s) | 157 |
| BbvI | GCAGC | 1 cut(s) | 206 |
| BccI | CCATC | 3 cut(s) | 210, 236, 373 |
| BceAI | ACGGC | 1 cut(s) | 255 |
| BcnI | CCSGG | 1 cut(s) | 162 |
| BfmI | CTRYAG | 1 cut(s) | 390 |
| BglII | AGATCT | 1 cut(s) | 445 |
| BisI | GCNGC | 2 cut(s) | 195, 367 |
| BlsI | GCNGC | 2 cut(s) | 196, 368 |
| Bme1390I | CCNGG | 1 cut(s) | 162 |
| Bme18I | GGWCC | 1 cut(s) | 330 |
| BmgT120I | GGNCC | 1 cut(s) | 330 |
| BmiI | GGNNCC | 1 cut(s) | 159 |
| BmrFI | CCNGG | 1 cut(s) | 162 |
| BpmI | CTGGAG | 1 cut(s) | 299 |
| BpuEI | CTTGAG | 1 cut(s) | 355 |
| BpuMI | CCSGG | 1 cut(s) | 162 |
| BsaJI | CCNNGG | 2 cut(s) | 333, 427 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 124, 277 |
| BseDI | CCNNGG | 2 cut(s) | 333, 427 |
| BseGI | GGATG | 1 cut(s) | 260 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 124, 277 |
| BseRI | GAGGAG | 1 cut(s) | 90 |
| BseXI | GCAGC | 1 cut(s) | 206 |
| BshFI | GGCC | 1 cut(s) | 173 |
| BshNI | GGYRCC | 1 cut(s) | 157 |
| BsiSI | CCGG | 1 cut(s) | 161 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 124, 277 |
| BsmI | GAATGC | 1 cut(s) | 154 |
| BsnI | GGCC | 1 cut(s) | 173 |
| Bsp143I | GATC | 4 cut(s) | 4, 274, 415, 445 |
| BspACI | CCGC | 1 cut(s) | 367 |
| BspANI | GGCC | 1 cut(s) | 173 |
| BspLI | GGNNCC | 1 cut(s) | 159 |
| BspPI | GGATC | 2 cut(s) | 12, 423 |
| BspT107I | GGYRCC | 1 cut(s) | 157 |
| BsrBI | CCGCTC | 1 cut(s) | 369 |
| BssECI | CCNNGG | 2 cut(s) | 333, 427 |
| BssMI | GATC | 4 cut(s) | 4, 274, 415, 445 |
| BssT1I | CCWWGG | 1 cut(s) | 333 |
| BstC8I | GCNNGC | 1 cut(s) | 340 |
| BstF5I | GGATG | 1 cut(s) | 260 |
| BstKTI | GATC | 4 cut(s) | 7, 277, 418, 448 |
| BstMBI | GATC | 4 cut(s) | 4, 274, 415, 445 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 16, 234, 372 |
| BstSCI | CCNGG | 1 cut(s) | 160 |
| BstSFI | CTRYAG | 1 cut(s) | 390 |
| BstV1I | GCAGC | 1 cut(s) | 206 |
| BstX2I | RGATCY | 1 cut(s) | 445 |
| BstYI | RGATCY | 1 cut(s) | 445 |
| BsuRI | GGCC | 1 cut(s) | 173 |
| BtsCI | GGATG | 1 cut(s) | 260 |
| Cac8I | GCNNGC | 1 cut(s) | 340 |
| Cfr13I | GGNCC | 1 cut(s) | 330 |
| Csp6I | GTAC | 1 cut(s) | 158 |
| CviAII | CATG | 1 cut(s) | 183 |
| CviQI | GTAC | 1 cut(s) | 158 |
| DpnI | GATC | 4 cut(s) | 6, 276, 417, 447 |
| DpnII | GATC | 4 cut(s) | 4, 274, 415, 445 |
| DraI | TTTAAA | 1 cut(s) | 123 |
| Eco130I | CCWWGG | 1 cut(s) | 333 |
| Eco47I | GGWCC | 1 cut(s) | 330 |
| EcoT14I | CCWWGG | 1 cut(s) | 333 |
| ErhI | CCWWGG | 1 cut(s) | 333 |
| FaeI | CATG | 1 cut(s) | 186 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 158, 190, 326, 358 |
| FatI | CATG | 1 cut(s) | 182 |
| FauNDI | CATATG | 1 cut(s) | 143 |
| Fnu4HI | GCNGC | 2 cut(s) | 195, 367 |
| FokI | GGATG | 1 cut(s) | 267 |
| Fsp4HI | GCNGC | 2 cut(s) | 195, 367 |
| GluI | GCNGC | 2 cut(s) | 195, 367 |
| GsuI | CTGGAG | 1 cut(s) | 299 |
| HaeIII | GGCC | 1 cut(s) | 173 |
| HapII | CCGG | 1 cut(s) | 161 |
| Hin1II | CATG | 1 cut(s) | 186 |
| HindIII | AAGCTT | 1 cut(s) | 226 |
| HpaII | CCGG | 1 cut(s) | 161 |
| HphI | GGTGA | 2 cut(s) | 257, 395 |
| Hpy188I | TCNGA | 1 cut(s) | 428 |
| Hpy188III | TCNNGA | 1 cut(s) | 278 |
| HpyAV | CCTTC | 3 cut(s) | 25, 148, 406 |
| HpyCH4V | TGCA | 2 cut(s) | 56, 194 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 16, 234, 372 |
| Hsp92II | CATG | 1 cut(s) | 186 |
| KpnI | GGTACC | 1 cut(s) | 161 |
| Kzo9I | GATC | 4 cut(s) | 4, 274, 415, 445 |
| LpnPI | CCDG | 5 cut(s) | 74, 174, 263, 324, 418 |
| Lsp1109I | GCAGC | 1 cut(s) | 206 |
| MalI | GATC | 4 cut(s) | 6, 276, 417, 447 |
| MbiI | CCGCTC | 1 cut(s) | 369 |
| MboI | GATC | 4 cut(s) | 4, 274, 415, 445 |
| MboII | GAAGA | 1 cut(s) | 197 |
| MflI | RGATCY | 1 cut(s) | 445 |
| MluCI | AATT | 3 cut(s) | 189, 220, 304 |
| MnlI | CCTC | 5 cut(s) | 111, 274, 312, 379, 422 |
| MseI | TTAA | 3 cut(s) | 122, 224, 303 |
| MspI | CCGG | 1 cut(s) | 161 |
| MspR9I | CCNGG | 1 cut(s) | 162 |
| Mva1269I | GAATGC | 1 cut(s) | 154 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 16, 234, 372 |
| NciI | CCSGG | 1 cut(s) | 162 |
| NdeI | CATATG | 1 cut(s) | 143 |
| NdeII | GATC | 4 cut(s) | 4, 274, 415, 445 |
| NlaIII | CATG | 1 cut(s) | 186 |
| NlaIV | GGNNCC | 1 cut(s) | 159 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 424 |
| PctI | GAATGC | 1 cut(s) | 154 |
| PkrI | GCNGC | 2 cut(s) | 196, 368 |
| PshBI | ATTAAT | 1 cut(s) | 303 |
| PspN4I | GGNNCC | 1 cut(s) | 159 |
| PspPI | GGNCC | 1 cut(s) | 330 |
| PsuI | RGATCY | 1 cut(s) | 445 |
| RsaI | GTAC | 1 cut(s) | 159 |
| RsaNI | GTAC | 1 cut(s) | 158 |
| SaqAI | TTAA | 3 cut(s) | 122, 224, 303 |
| SatI | GCNGC | 2 cut(s) | 195, 367 |
| Sau3AI | GATC | 4 cut(s) | 4, 274, 415, 445 |
| Sau96I | GGNCC | 1 cut(s) | 330 |
| ScrFI | CCNGG | 1 cut(s) | 162 |
| SetI | ASST | 4 cut(s) | 129, 159, 171, 230 |
| SfcI | CTRYAG | 1 cut(s) | 390 |
| SinI | GGWCC | 1 cut(s) | 330 |
| SmlI | CTYRAG | 1 cut(s) | 370 |
| SmoI | CTYRAG | 1 cut(s) | 370 |
| Sse9I | AATT | 3 cut(s) | 189, 220, 304 |
| SsiI | CCGC | 1 cut(s) | 367 |
| SspI | AATATT | 1 cut(s) | 202 |
| StyD4I | CCNGG | 1 cut(s) | 160 |
| StyI | CCWWGG | 1 cut(s) | 333 |
| TasI | AATT | 3 cut(s) | 189, 220, 304 |
| TauI | GCSGC | 1 cut(s) | 369 |
| Tru1I | TTAA | 3 cut(s) | 122, 224, 303 |
| Tru9I | TTAA | 3 cut(s) | 122, 224, 303 |
| TseI | GCWGC | 1 cut(s) | 194 |
| VpaK11BI | GGWCC | 1 cut(s) | 330 |
| VspI | ATTAAT | 1 cut(s) | 303 |
| XapI | RAATTY | 1 cut(s) | 220 |