ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 6 - 60 | 4.8e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 255 |
| Acc36I | ACCTGC | 1 cut(s) | 44 |
| AciI | CCGC | 3 cut(s) | 385, 388, 408 |
| AcoI | YGGCCR | 1 cut(s) | 409 |
| AcyI | GRCGYC | 1 cut(s) | 252 |
| AfaI | GTAC | 2 cut(s) | 298, 442 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 262, 418 |
| AgsI | TTSAA | 1 cut(s) | 95 |
| AluBI | AGCT | 2 cut(s) | 18, 302 |
| AluI | AGCT | 2 cut(s) | 18, 302 |
| Alw21I | GWGCWC | 1 cut(s) | 115 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 438 |
| Ama87I | CYCGRG | 1 cut(s) | 154 |
| AoxI | GGCC | 2 cut(s) | 358, 409 |
| ApeKI | GCWGC | 2 cut(s) | 125, 352 |
| AspS9I | GGNCC | 1 cut(s) | 359 |
| AsuC2I | CCSGG | 1 cut(s) | 419 |
| AvaI | CYCGRG | 1 cut(s) | 154 |
| Bbv12I | GWGCWC | 1 cut(s) | 115 |
| BbvI | GCAGC | 2 cut(s) | 112, 364 |
| BccI | CCATC | 1 cut(s) | 75 |
| BceAI | ACGGC | 1 cut(s) | 373 |
| BcnI | CCSGG | 1 cut(s) | 419 |
| BfaI | CTAG | 4 cut(s) | 65, 119, 195, 311 |
| BfmI | CTRYAG | 1 cut(s) | 222 |
| BfuAI | ACCTGC | 1 cut(s) | 44 |
| BisI | GCNGC | 5 cut(s) | 126, 353, 386, 389, 409 |
| BlsI | GCNGC | 5 cut(s) | 127, 354, 387, 390, 410 |
| Bme1390I | CCNGG | 1 cut(s) | 419 |
| BmeT110I | CYCGRG | 1 cut(s) | 154 |
| BmgT120I | GGNCC | 1 cut(s) | 359 |
| BmiI | GGNNCC | 2 cut(s) | 234, 361 |
| BmrFI | CCNGG | 1 cut(s) | 419 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 137, 169 |
| BpuMI | CCSGG | 1 cut(s) | 419 |
| Bsa29I | ATCGAT | 1 cut(s) | 178 |
| BsaHI | GRCGYC | 1 cut(s) | 252 |
| BsaJI | CCNNGG | 2 cut(s) | 39, 418 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 262, 418 |
| BseCI | ATCGAT | 1 cut(s) | 178 |
| BseDI | CCNNGG | 2 cut(s) | 39, 418 |
| BseGI | GGATG | 1 cut(s) | 86 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 262, 418 |
| BseXI | GCAGC | 2 cut(s) | 112, 364 |
| BsgI | GTGCAG | 1 cut(s) | 6 |
| BshFI | GGCC | 2 cut(s) | 360, 411 |
| BshVI | ATCGAT | 1 cut(s) | 178 |
| BsiHKAI | GWGCWC | 1 cut(s) | 115 |
| BsiHKCI | CYCGRG | 1 cut(s) | 154 |
| BsiSI | CCGG | 2 cut(s) | 405, 418 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 262, 418 |
| BsnI | GGCC | 2 cut(s) | 360, 411 |
| BsoBI | CYCGRG | 1 cut(s) | 154 |
| Bsp1286I | GDGCHC | 1 cut(s) | 115 |
| Bsp1407I | TGTACA | 1 cut(s) | 440 |
| Bsp143I | GATC | 1 cut(s) | 202 |
| BspACI | CCGC | 3 cut(s) | 385, 388, 408 |
| BspANI | GGCC | 2 cut(s) | 360, 411 |
| BspDI | ATCGAT | 1 cut(s) | 178 |
| BspLI | GGNNCC | 2 cut(s) | 234, 361 |
| BspMI | ACCTGC | 1 cut(s) | 44 |
| BsrGI | TGTACA | 1 cut(s) | 440 |
| BssECI | CCNNGG | 2 cut(s) | 39, 418 |
| BssMI | GATC | 1 cut(s) | 202 |
| BssNI | GRCGYC | 1 cut(s) | 252 |
| BssT1I | CCWWGG | 1 cut(s) | 39 |
| Bst4CI | ACNGT | 1 cut(s) | 434 |
| BstACI | GRCGYC | 1 cut(s) | 252 |
| BstAUI | TGTACA | 1 cut(s) | 440 |
| BstC8I | GCNNGC | 2 cut(s) | 46, 393 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 260 |
| BstF5I | GGATG | 1 cut(s) | 86 |
| BstKTI | GATC | 1 cut(s) | 205 |
| BstMBI | GATC | 1 cut(s) | 202 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 50, 352 |
| BstNSI | RCATGY | 1 cut(s) | 310 |
| BstSCI | CCNGG | 1 cut(s) | 417 |
| BstSFI | CTRYAG | 1 cut(s) | 222 |
| BstV1I | GCAGC | 2 cut(s) | 112, 364 |
| Bsu15I | ATCGAT | 1 cut(s) | 178 |
| BsuRI | GGCC | 2 cut(s) | 360, 411 |
| BsuTUI | ATCGAT | 1 cut(s) | 178 |
| BtsCI | GGATG | 1 cut(s) | 86 |
| BveI | ACCTGC | 1 cut(s) | 44 |
| Cac8I | GCNNGC | 2 cut(s) | 46, 393 |
| CaiI | CAGNNNCTG | 1 cut(s) | 438 |
| Cfr13I | GGNCC | 1 cut(s) | 359 |
| ClaI | ATCGAT | 1 cut(s) | 178 |
| Csp6I | GTAC | 2 cut(s) | 297, 441 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 150, 185 |
| CviAII | CATG | 5 cut(s) | 77, 130, 142, 206, 307 |
| CviJI | RGCY | 9 cut(s) | 18, 38, 44, 233, 302, 331, 360, 391, 411 |
| CviKI_1 | RGCY | 9 cut(s) | 18, 38, 44, 233, 302, 331, 360, 391, 411 |
| CviQI | GTAC | 2 cut(s) | 297, 441 |
| DpnI | GATC | 1 cut(s) | 204 |
| DpnII | GATC | 1 cut(s) | 202 |
| EaeI | YGGCCR | 1 cut(s) | 409 |
| Eco130I | CCWWGG | 1 cut(s) | 39 |
| Eco88I | CYCGRG | 1 cut(s) | 154 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 260 |
| EcoT14I | CCWWGG | 1 cut(s) | 39 |
| ErhI | CCWWGG | 1 cut(s) | 39 |
| FaeI | CATG | 5 cut(s) | 80, 133, 145, 209, 310 |
| FatI | CATG | 5 cut(s) | 76, 129, 141, 205, 306 |
| Fnu4HI | GCNGC | 5 cut(s) | 126, 353, 386, 389, 409 |
| FokI | GGATG | 1 cut(s) | 93 |
| Fsp4HI | GCNGC | 5 cut(s) | 126, 353, 386, 389, 409 |
| FspBI | CTAG | 4 cut(s) | 65, 119, 195, 311 |
| GluI | GCNGC | 5 cut(s) | 126, 353, 386, 389, 409 |
| HaeIII | GGCC | 2 cut(s) | 360, 411 |
| HapII | CCGG | 2 cut(s) | 405, 418 |
| Hin1I | GRCGYC | 1 cut(s) | 252 |
| Hin1II | CATG | 5 cut(s) | 80, 133, 145, 209, 310 |
| HinfI | GANTC | 2 cut(s) | 4, 133 |
| HpaII | CCGG | 2 cut(s) | 405, 418 |
| Hpy188III | TCNNGA | 1 cut(s) | 156 |
| HpyAV | CCTTC | 1 cut(s) | 79 |
| HpyCH4III | ACNGT | 1 cut(s) | 434 |
| HpyCH4IV | ACGT | 1 cut(s) | 252 |
| HpyCH4V | TGCA | 2 cut(s) | 23, 48 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 50, 352 |
| HpySE526I | ACGT | 1 cut(s) | 252 |
| Hsp92I | GRCGYC | 1 cut(s) | 252 |
| Hsp92II | CATG | 5 cut(s) | 80, 133, 145, 209, 310 |
| Kzo9I | GATC | 1 cut(s) | 202 |
| LmnI | GCTCC | 1 cut(s) | 238 |
| LpnPI | CCDG | 5 cut(s) | 39, 233, 249, 418, 431 |
| Lsp1109I | GCAGC | 2 cut(s) | 112, 364 |
| MaeI | CTAG | 4 cut(s) | 65, 119, 195, 311 |
| MaeII | ACGT | 1 cut(s) | 252 |
| MaeIII | GTNAC | 2 cut(s) | 272, 422 |
| MalI | GATC | 1 cut(s) | 204 |
| MboI | GATC | 1 cut(s) | 202 |
| MhlI | GDGCHC | 1 cut(s) | 115 |
| MluCI | AATT | 1 cut(s) | 96 |
| MnlI | CCTC | 6 cut(s) | 18, 139, 195, 223, 256, 266 |
| MseI | TTAA | 1 cut(s) | 14 |
| MspI | CCGG | 2 cut(s) | 405, 418 |
| MspR9I | CCNGG | 1 cut(s) | 419 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 50, 352 |
| NciI | CCSGG | 1 cut(s) | 419 |
| NdeII | GATC | 1 cut(s) | 202 |
| NlaIII | CATG | 5 cut(s) | 80, 133, 145, 209, 310 |
| NlaIV | GGNNCC | 2 cut(s) | 234, 361 |
| NmuCI | GTSAC | 1 cut(s) | 422 |
| NspI | RCATGY | 1 cut(s) | 310 |
| PaeR7I | CTCGAG | 1 cut(s) | 154 |
| PfeI | GAWTC | 2 cut(s) | 4, 133 |
| PkrI | GCNGC | 5 cut(s) | 127, 354, 387, 390, 410 |
| PspN4I | GGNNCC | 2 cut(s) | 234, 361 |
| PspPI | GGNCC | 1 cut(s) | 359 |
| PstNI | CAGNNNCTG | 1 cut(s) | 438 |
| RsaI | GTAC | 2 cut(s) | 298, 442 |
| RsaNI | GTAC | 2 cut(s) | 297, 441 |
| SaqAI | TTAA | 1 cut(s) | 14 |
| SatI | GCNGC | 5 cut(s) | 126, 353, 386, 389, 409 |
| Sau3AI | GATC | 1 cut(s) | 202 |
| Sau96I | GGNCC | 1 cut(s) | 359 |
| ScrFI | CCNGG | 1 cut(s) | 419 |
| SduI | GDGCHC | 1 cut(s) | 115 |
| SetI | ASST | 4 cut(s) | 20, 58, 255, 304 |
| SfcI | CTRYAG | 1 cut(s) | 222 |
| Sfr274I | CTCGAG | 1 cut(s) | 154 |
| SlaI | CTCGAG | 1 cut(s) | 154 |
| SmlI | CTYRAG | 1 cut(s) | 154 |
| SmoI | CTYRAG | 1 cut(s) | 154 |
| Sse9I | AATT | 1 cut(s) | 96 |
| SsiI | CCGC | 3 cut(s) | 385, 388, 408 |
| SspMI | CTAG | 4 cut(s) | 65, 119, 195, 311 |
| StyD4I | CCNGG | 1 cut(s) | 417 |
| StyI | CCWWGG | 1 cut(s) | 39 |
| TaaI | ACNGT | 1 cut(s) | 434 |
| TaiI | ACGT | 1 cut(s) | 255 |
| TaqI | TCGA | 2 cut(s) | 155, 178 |
| TasI | AATT | 1 cut(s) | 96 |
| TatI | WGTACW | 1 cut(s) | 440 |
| TauI | GCSGC | 3 cut(s) | 388, 391, 411 |
| TfiI | GAWTC | 2 cut(s) | 4, 133 |
| Tru1I | TTAA | 1 cut(s) | 14 |
| Tru9I | TTAA | 1 cut(s) | 14 |
| TseFI | GTSAC | 1 cut(s) | 422 |
| TseI | GCWGC | 2 cut(s) | 125, 352 |
| Tsp45I | GTSAC | 1 cut(s) | 422 |
| TspDTI | ATGAA | 3 cut(s) | 17, 146, 356 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 260 |
| XceI | RCATGY | 1 cut(s) | 310 |
| XhoI | CTCGAG | 1 cut(s) | 154 |
| XspI | CTAG | 4 cut(s) | 65, 119, 195, 311 |
| ZraI | GACGTC | 1 cut(s) | 253 |