Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 43 - 140 | 1.6e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 395 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 110 |
| AciI | CCGC | 1 cut(s) | 260 |
| AcsI | RAATTY | 1 cut(s) | 4 |
| AdeI | CACNNNGTG | 1 cut(s) | 110 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 58, 110 |
| AgsI | TTSAA | 2 cut(s) | 14, 323 |
| AleI | CACNNNNGTG | 1 cut(s) | 341 |
| AoxI | GGCC | 2 cut(s) | 80, 221 |
| ApeKI | GCWGC | 2 cut(s) | 209, 347 |
| ApoI | RAATTY | 1 cut(s) | 4 |
| AsuC2I | CCSGG | 1 cut(s) | 389 |
| AsuHPI | GGTGA | 1 cut(s) | 287 |
| AxyI | CCTNAGG | 1 cut(s) | 57 |
| BbsI | GAAGAC | 1 cut(s) | 272 |
| BbvI | GCAGC | 2 cut(s) | 196, 334 |
| BccI | CCATC | 2 cut(s) | 60, 128 |
| BcnI | CCSGG | 1 cut(s) | 389 |
| BfaI | CTAG | 2 cut(s) | 78, 108 |
| BfmI | CTRYAG | 1 cut(s) | 210 |
| BglII | AGATCT | 1 cut(s) | 370 |
| BisI | GCNGC | 2 cut(s) | 210, 348 |
| BlsI | GCNGC | 2 cut(s) | 211, 349 |
| Bme1390I | CCNGG | 1 cut(s) | 389 |
| BmrFI | CCNGG | 1 cut(s) | 389 |
| BpiI | GAAGAC | 1 cut(s) | 272 |
| BpuMI | CCSGG | 1 cut(s) | 389 |
| BsaJI | CCNNGG | 1 cut(s) | 298 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 58, 110 |
| Bse21I | CCTNAGG | 1 cut(s) | 57 |
| BseDI | CCNNGG | 1 cut(s) | 298 |
| BseGI | GGATG | 2 cut(s) | 52, 193 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 58, 110 |
| BseRI | GAGGAG | 1 cut(s) | 377 |
| BseXI | GCAGC | 2 cut(s) | 196, 334 |
| BshFI | GGCC | 2 cut(s) | 82, 223 |
| BsiSI | CCGG | 1 cut(s) | 388 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 58, 110 |
| BsmI | GAATGC | 1 cut(s) | 104 |
| BsnI | GGCC | 2 cut(s) | 82, 223 |
| Bsp143I | GATC | 1 cut(s) | 370 |
| BspACI | CCGC | 1 cut(s) | 260 |
| BspANI | GGCC | 2 cut(s) | 82, 223 |
| BspMAI | CTGCAG | 1 cut(s) | 214 |
| BssECI | CCNNGG | 1 cut(s) | 298 |
| BssMI | GATC | 1 cut(s) | 370 |
| BssT1I | CCWWGG | 1 cut(s) | 298 |
| BstDEI | CTNAG | 1 cut(s) | 57 |
| BstF5I | GGATG | 2 cut(s) | 52, 193 |
| BstKTI | GATC | 1 cut(s) | 373 |
| BstMBI | GATC | 1 cut(s) | 370 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 215 |
| BstNSI | RCATGY | 1 cut(s) | 236 |
| BstSCI | CCNGG | 1 cut(s) | 387 |
| BstSFI | CTRYAG | 1 cut(s) | 210 |
| BstV1I | GCAGC | 2 cut(s) | 196, 334 |
| BstV2I | GAAGAC | 1 cut(s) | 272 |
| BstX2I | RGATCY | 1 cut(s) | 370 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 343 |
| BstYI | RGATCY | 1 cut(s) | 370 |
| Bsu36I | CCTNAGG | 1 cut(s) | 57 |
| BsuRI | GGCC | 2 cut(s) | 82, 223 |
| BtsCI | GGATG | 2 cut(s) | 52, 193 |
| BtsI | GCAGTG | 1 cut(s) | 69 |
| BtsIMutI | CAGTG | 1 cut(s) | 69 |
| CviAII | CATG | 1 cut(s) | 233 |
| CviJI | RGCY | 5 cut(s) | 77, 82, 118, 223, 347 |
| CviKI_1 | RGCY | 5 cut(s) | 77, 82, 118, 223, 347 |
| DdeI | CTNAG | 1 cut(s) | 57 |
| DpnI | GATC | 1 cut(s) | 372 |
| DpnII | GATC | 1 cut(s) | 370 |
| DraIII | CACNNNGTG | 1 cut(s) | 110 |
| Eco130I | CCWWGG | 1 cut(s) | 298 |
| Eco147I | AGGCCT | 2 cut(s) | 82, 223 |
| Eco81I | CCTNAGG | 1 cut(s) | 57 |
| EcoT14I | CCWWGG | 1 cut(s) | 298 |
| EcoT22I | ATGCAT | 1 cut(s) | 238 |
| ErhI | CCWWGG | 1 cut(s) | 298 |
| FaeI | CATG | 1 cut(s) | 236 |
| FaiI | YATR | 6 cut(s) | 162, 200, 234, 238, 254, 395 |
| FatI | CATG | 1 cut(s) | 232 |
| Fnu4HI | GCNGC | 2 cut(s) | 210, 348 |
| FokI | GGATG | 2 cut(s) | 39, 200 |
| Fsp4HI | GCNGC | 2 cut(s) | 210, 348 |
| FspBI | CTAG | 2 cut(s) | 78, 108 |
| GluI | GCNGC | 2 cut(s) | 210, 348 |
| HaeIII | GGCC | 2 cut(s) | 82, 223 |
| HapII | CCGG | 1 cut(s) | 388 |
| Hin1II | CATG | 1 cut(s) | 236 |
| HinfI | GANTC | 2 cut(s) | 10, 329 |
| HpaII | CCGG | 1 cut(s) | 388 |
| HphI | GGTGA | 1 cut(s) | 287 |
| Hpy166II | GTNNAC | 1 cut(s) | 385 |
| Hpy188I | TCNGA | 2 cut(s) | 45, 379 |
| Hpy8I | GTNNAC | 1 cut(s) | 385 |
| HpyAV | CCTTC | 1 cut(s) | 108 |
| HpyCH4V | TGCA | 2 cut(s) | 212, 236 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 215 |
| HpyF3I | CTNAG | 1 cut(s) | 57 |
| Hsp92II | CATG | 1 cut(s) | 236 |
| Kzo9I | GATC | 1 cut(s) | 370 |
| LmnI | GCTCC | 1 cut(s) | 137 |
| LpnPI | CCDG | 1 cut(s) | 401 |
| Lsp1109I | GCAGC | 2 cut(s) | 196, 334 |
| MaeI | CTAG | 2 cut(s) | 78, 108 |
| MaeIII | GTNAC | 1 cut(s) | 410 |
| MalI | GATC | 1 cut(s) | 372 |
| MboI | GATC | 1 cut(s) | 370 |
| MboII | GAAGA | 2 cut(s) | 272, 275 |
| MflI | RGATCY | 1 cut(s) | 370 |
| MluCI | AATT | 2 cut(s) | 4, 168 |
| MlyI | GAGTC | 1 cut(s) | 323 |
| MmeI | TCCRAC | 1 cut(s) | 284 |
| MnlI | CCTC | 6 cut(s) | 28, 84, 177, 256, 355, 373 |
| Mph1103I | ATGCAT | 1 cut(s) | 238 |
| MseI | TTAA | 3 cut(s) | 249, 354, 427 |
| MslI | CAYNNNNRTG | 1 cut(s) | 341 |
| MspI | CCGG | 1 cut(s) | 388 |
| MspR9I | CCNGG | 1 cut(s) | 389 |
| Mva1269I | GAATGC | 1 cut(s) | 104 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 215 |
| NciI | CCSGG | 1 cut(s) | 389 |
| NdeII | GATC | 1 cut(s) | 370 |
| NlaIII | CATG | 1 cut(s) | 236 |
| NsiI | ATGCAT | 1 cut(s) | 238 |
| NspI | RCATGY | 1 cut(s) | 236 |
| OliI | CACNNNNGTG | 1 cut(s) | 341 |
| PceI | AGGCCT | 2 cut(s) | 82, 223 |
| PctI | GAATGC | 1 cut(s) | 104 |
| PfeI | GAWTC | 1 cut(s) | 10 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 110 |
| PkrI | GCNGC | 2 cut(s) | 211, 349 |
| PleI | GAGTC | 1 cut(s) | 323 |
| PpsI | GAGTC | 1 cut(s) | 323 |
| PsiI | TTATAA | 1 cut(s) | 395 |
| PstI | CTGCAG | 1 cut(s) | 214 |
| PsuI | RGATCY | 1 cut(s) | 370 |
| RseI | CAYNNNNRTG | 1 cut(s) | 341 |
| SaqAI | TTAA | 3 cut(s) | 249, 354, 427 |
| SatI | GCNGC | 2 cut(s) | 210, 348 |
| Sau3AI | GATC | 1 cut(s) | 370 |
| SchI | GAGTC | 1 cut(s) | 323 |
| ScrFI | CCNGG | 1 cut(s) | 389 |
| SetI | ASST | 4 cut(s) | 95, 109, 304, 384 |
| SfcI | CTRYAG | 1 cut(s) | 210 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 341 |
| Sse9I | AATT | 2 cut(s) | 4, 168 |
| SseBI | AGGCCT | 2 cut(s) | 82, 223 |
| SsiI | CCGC | 1 cut(s) | 260 |
| SspMI | CTAG | 2 cut(s) | 78, 108 |
| StuI | AGGCCT | 2 cut(s) | 82, 223 |
| StyD4I | CCNGG | 1 cut(s) | 387 |
| StyI | CCWWGG | 1 cut(s) | 298 |
| TaqI | TCGA | 1 cut(s) | 132 |
| TasI | AATT | 2 cut(s) | 4, 168 |
| TfiI | GAWTC | 1 cut(s) | 10 |
| Tru1I | TTAA | 3 cut(s) | 249, 354, 427 |
| Tru9I | TTAA | 3 cut(s) | 249, 354, 427 |
| TscAI | CASTG | 1 cut(s) | 69 |
| TseI | GCWGC | 2 cut(s) | 209, 347 |
| TspDTI | ATGAA | 3 cut(s) | 17, 83, 204 |
| TspRI | CASTG | 1 cut(s) | 69 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 110 |
| XapI | RAATTY | 1 cut(s) | 4 |
| XceI | RCATGY | 1 cut(s) | 236 |
| XspI | CTAG | 2 cut(s) | 78, 108 |
| Zsp2I | ATGCAT | 1 cut(s) | 238 |