Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 42 - 120 | 1.7e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 107 |
| AciI | CCGC | 2 cut(s) | 192, 311 |
| AclWI | GGATC | 1 cut(s) | 20 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 107 |
| AgsI | TTSAA | 3 cut(s) | 20, 38, 320 |
| AluBI | AGCT | 4 cut(s) | 72, 209, 247, 266 |
| AluI | AGCT | 4 cut(s) | 72, 209, 247, 266 |
| AlwI | GGATC | 1 cut(s) | 20 |
| ApeKI | GCWGC | 3 cut(s) | 206, 263, 308 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 95, 127 |
| AsuHPI | GGTGA | 3 cut(s) | 187, 206, 335 |
| AsuNHI | GCTAGC | 1 cut(s) | 247 |
| BbvCI | CCTCAGC | 1 cut(s) | 243 |
| BbvI | GCAGC | 3 cut(s) | 218, 275, 295 |
| BceAI | ACGGC | 1 cut(s) | 364 |
| BfaI | CTAG | 3 cut(s) | 219, 248, 267 |
| BfmI | CTRYAG | 2 cut(s) | 73, 302 |
| BisI | GCNGC | 3 cut(s) | 207, 264, 309 |
| BlsI | GCNGC | 3 cut(s) | 208, 265, 310 |
| BmsI | GCATC | 2 cut(s) | 262, 316 |
| BmtI | GCTAGC | 1 cut(s) | 251 |
| Bpu10I | CCTNAGC | 1 cut(s) | 243 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 107 |
| BseGI | GGATG | 2 cut(s) | 148, 277 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 107 |
| BseMII | CTCAG | 2 cut(s) | 98, 257 |
| BseRI | GAGGAG | 1 cut(s) | 231 |
| BseXI | GCAGC | 3 cut(s) | 218, 275, 295 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 107 |
| Bsp143I | GATC | 1 cut(s) | 25 |
| BspACI | CCGC | 2 cut(s) | 192, 311 |
| BspCNI | CTCAG | 2 cut(s) | 97, 256 |
| BspHI | TCATGA | 1 cut(s) | 364 |
| BspOI | GCTAGC | 1 cut(s) | 251 |
| BspPI | GGATC | 1 cut(s) | 20 |
| BssMI | GATC | 1 cut(s) | 25 |
| BstC8I | GCNNGC | 1 cut(s) | 249 |
| BstDEI | CTNAG | 3 cut(s) | 30, 84, 243 |
| BstF5I | GGATG | 2 cut(s) | 148, 277 |
| BstKTI | GATC | 1 cut(s) | 28 |
| BstMBI | GATC | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 212, 272 |
| BstNSI | RCATGY | 1 cut(s) | 227 |
| BstSFI | CTRYAG | 2 cut(s) | 73, 302 |
| BstV1I | GCAGC | 3 cut(s) | 218, 275, 295 |
| BstX2I | RGATCY | 1 cut(s) | 25 |
| BstYI | RGATCY | 1 cut(s) | 25 |
| BtsCI | GGATG | 2 cut(s) | 148, 277 |
| Cac8I | GCNNGC | 1 cut(s) | 249 |
| CciI | TCATGA | 1 cut(s) | 364 |
| CviAII | CATG | 3 cut(s) | 138, 224, 365 |
| CviJI | RGCY | 8 cut(s) | 72, 100, 209, 247, 251, 266, 308, 347 |
| CviKI_1 | RGCY | 8 cut(s) | 72, 100, 209, 247, 251, 266, 308, 347 |
| DdeI | CTNAG | 3 cut(s) | 30, 84, 243 |
| DpnI | GATC | 1 cut(s) | 27 |
| DpnII | GATC | 1 cut(s) | 25 |
| DraI | TTTAAA | 1 cut(s) | 118 |
| FaeI | CATG | 3 cut(s) | 141, 227, 368 |
| FaiI | YATR | 7 cut(s) | 139, 212, 225, 260, 341, 357, 366 |
| FatI | CATG | 3 cut(s) | 137, 223, 364 |
| Fnu4HI | GCNGC | 3 cut(s) | 207, 264, 309 |
| FokI | GGATG | 2 cut(s) | 155, 284 |
| Fsp4HI | GCNGC | 3 cut(s) | 207, 264, 309 |
| FspBI | CTAG | 3 cut(s) | 219, 248, 267 |
| GluI | GCNGC | 3 cut(s) | 207, 264, 309 |
| Hin1II | CATG | 3 cut(s) | 141, 227, 368 |
| HinfI | GANTC | 2 cut(s) | 38, 178 |
| HphI | GGTGA | 3 cut(s) | 187, 206, 335 |
| Hpy188I | TCNGA | 2 cut(s) | 87, 183 |
| Hpy188III | TCNNGA | 1 cut(s) | 365 |
| HpyAV | CCTTC | 1 cut(s) | 314 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 212, 272 |
| HpyF3I | CTNAG | 3 cut(s) | 30, 84, 243 |
| Hsp92II | CATG | 3 cut(s) | 141, 227, 368 |
| Kzo9I | GATC | 1 cut(s) | 25 |
| LpnPI | CCDG | 1 cut(s) | 290 |
| Lsp1109I | GCAGC | 3 cut(s) | 218, 275, 295 |
| LweI | GCATC | 2 cut(s) | 262, 316 |
| MaeI | CTAG | 3 cut(s) | 219, 248, 267 |
| MaeIII | GTNAC | 2 cut(s) | 194, 226 |
| MalI | GATC | 1 cut(s) | 27 |
| MboI | GATC | 1 cut(s) | 25 |
| MflI | RGATCY | 1 cut(s) | 25 |
| MluCI | AATT | 2 cut(s) | 89, 124 |
| MnlI | CCTC | 4 cut(s) | 247, 252, 288, 361 |
| MseI | TTAA | 2 cut(s) | 12, 117 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 212, 272 |
| NdeII | GATC | 1 cut(s) | 25 |
| NheI | GCTAGC | 1 cut(s) | 247 |
| NlaIII | CATG | 3 cut(s) | 141, 227, 368 |
| NmuCI | GTSAC | 2 cut(s) | 194, 226 |
| NspI | RCATGY | 1 cut(s) | 227 |
| PagI | TCATGA | 1 cut(s) | 364 |
| PfeI | GAWTC | 2 cut(s) | 38, 178 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 107 |
| PkrI | GCNGC | 3 cut(s) | 208, 265, 310 |
| PsuI | RGATCY | 1 cut(s) | 25 |
| SaqAI | TTAA | 2 cut(s) | 12, 117 |
| SatI | GCNGC | 3 cut(s) | 207, 264, 309 |
| Sau3AI | GATC | 1 cut(s) | 25 |
| SetI | ASST | 5 cut(s) | 74, 211, 249, 268, 325 |
| SfaNI | GCATC | 2 cut(s) | 262, 316 |
| SfcI | CTRYAG | 2 cut(s) | 73, 302 |
| SgeI | CNNG | 9 cut(s) | 150, 231, 236, 260, 279, 301, 317, 347, 377 |
| Sse9I | AATT | 2 cut(s) | 89, 124 |
| SsiI | CCGC | 2 cut(s) | 192, 311 |
| SspI | AATATT | 2 cut(s) | 106, 390 |
| SspMI | CTAG | 3 cut(s) | 219, 248, 267 |
| TasI | AATT | 2 cut(s) | 89, 124 |
| TfiI | GAWTC | 2 cut(s) | 38, 178 |
| Tru1I | TTAA | 2 cut(s) | 12, 117 |
| Tru9I | TTAA | 2 cut(s) | 12, 117 |
| TseFI | GTSAC | 2 cut(s) | 194, 226 |
| TseI | GCWGC | 3 cut(s) | 206, 263, 308 |
| Tsp45I | GTSAC | 2 cut(s) | 194, 226 |
| TspDTI | ATGAA | 4 cut(s) | 39, 75, 110, 159 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 107 |
| XceI | RCATGY | 1 cut(s) | 227 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 356 |
| XspI | CTAG | 3 cut(s) | 219, 248, 267 |