Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exostosin_GT47 | PF03016 | 191 - 470 | 4.3e-61 | Exostosin GT47 domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 399, 1134 |
| Acc65I | GGTACC | 1 cut(s) | 1122 |
| AccB1I | GGYRCC | 1 cut(s) | 1122 |
| AciI | CCGC | 3 cut(s) | 230, 1242, 1552 |
| AclWI | GGATC | 3 cut(s) | 494, 602, 1569 |
| AcoI | YGGCCR | 2 cut(s) | 774, 1111 |
| AcsI | RAATTY | 1 cut(s) | 350 |
| AcyI | GRCGYC | 1 cut(s) | 111 |
| AfaI | GTAC | 9 cut(s) | 153, 160, 294, 474, 764, 957, 1124, 1371, 1430 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 772, 901, 1074, 1558 |
| AgsI | TTSAA | 6 cut(s) | 340, 425, 583, 988, 1510, 1546 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1351 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 563, 595 |
| AluBI | AGCT | 5 cut(s) | 92, 182, 242, 464, 934 |
| AluI | AGCT | 5 cut(s) | 92, 182, 242, 464, 934 |
| Alw26I | GTCTC | 1 cut(s) | 1064 |
| AlwI | GGATC | 3 cut(s) | 494, 602, 1569 |
| Ama87I | CYCGRG | 1 cut(s) | 468 |
| AoxI | GGCC | 5 cut(s) | 200, 774, 905, 1099, 1111 |
| ApeKI | GCWGC | 3 cut(s) | 233, 464, 1105 |
| ApoI | RAATTY | 1 cut(s) | 350 |
| AseI | ATTAAT | 1 cut(s) | 363 |
| Asp718I | GGTACC | 1 cut(s) | 1122 |
| AspS9I | GGNCC | 5 cut(s) | 521, 629, 699, 905, 1484 |
| AsuHPI | GGTGA | 5 cut(s) | 27, 368, 760, 1317, 1489 |
| AvaI | CYCGRG | 1 cut(s) | 468 |
| AvaII | GGWCC | 4 cut(s) | 521, 629, 699, 1484 |
| BaeGI | GKGCMC | 1 cut(s) | 1238 |
| BalI | TGGCCA | 1 cut(s) | 1113 |
| BanI | GGYRCC | 1 cut(s) | 1122 |
| BanII | GRGCYC | 1 cut(s) | 1262 |
| BbvCI | CCTCAGC | 1 cut(s) | 930 |
| BbvI | GCAGC | 3 cut(s) | 245, 451, 1092 |
| BccI | CCATC | 3 cut(s) | 31, 562, 1286 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 957, 991 |
| BcoDI | GTCTC | 1 cut(s) | 1064 |
| BfaI | CTAG | 3 cut(s) | 80, 179, 204 |
| BfmI | CTRYAG | 1 cut(s) | 651 |
| BfuAI | ACCTGC | 2 cut(s) | 399, 1134 |
| BisI | GCNGC | 4 cut(s) | 231, 234, 465, 1106 |
| BlsI | GCNGC | 4 cut(s) | 232, 235, 466, 1107 |
| BmcAI | AGTACT | 1 cut(s) | 1430 |
| Bme18I | GGWCC | 4 cut(s) | 521, 629, 699, 1484 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1351 |
| BmeT110I | CYCGRG | 1 cut(s) | 468 |
| BmgT120I | GGNCC | 5 cut(s) | 521, 629, 699, 905, 1484 |
| BmiI | GGNNCC | 2 cut(s) | 906, 1124 |
| BmrI | ACTGGG | 1 cut(s) | 164 |
| BmsI | GCATC | 2 cut(s) | 386, 458 |
| BmuI | ACTGGG | 1 cut(s) | 164 |
| BpmI | CTGGAG | 1 cut(s) | 459 |
| Bpu10I | CCTNAGC | 2 cut(s) | 930, 1535 |
| BpuEI | CTTGAG | 3 cut(s) | 195, 501, 1453 |
| BsaBI | GATNNNNATC | 1 cut(s) | 843 |
| BsaHI | GRCGYC | 1 cut(s) | 111 |
| BsaI | GGTCTC | 1 cut(s) | 1064 |
| BsaJI | CCNNGG | 2 cut(s) | 865, 1186 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 130, 160 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 772, 901, 1074, 1558 |
| Bse118I | RCCGGY | 3 cut(s) | 1074, 1101, 1297 |
| Bse1I | ACTGG | 4 cut(s) | 159, 1036, 1352, 1426 |
| Bse3DI | GCAATG | 1 cut(s) | 970 |
| Bse8I | GATNNNNATC | 1 cut(s) | 843 |
| BseDI | CCNNGG | 2 cut(s) | 865, 1186 |
| BseGI | GGATG | 3 cut(s) | 244, 449, 844 |
| BseJI | GATNNNNATC | 1 cut(s) | 843 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 772, 901, 1074, 1558 |
| BseMI | GCAATG | 1 cut(s) | 970 |
| BseMII | CTCAG | 3 cut(s) | 944, 1433, 1549 |
| BseNI | ACTGG | 4 cut(s) | 159, 1036, 1352, 1426 |
| BseSI | GKGCMC | 1 cut(s) | 1238 |
| BseXI | GCAGC | 3 cut(s) | 245, 451, 1092 |
| BseYI | CCCAGC | 1 cut(s) | 1238 |
| BsgI | GTGCAG | 1 cut(s) | 1481 |
| BshFI | GGCC | 5 cut(s) | 202, 776, 907, 1101, 1113 |
| BshNI | GGYRCC | 1 cut(s) | 1122 |
| BsiHKCI | CYCGRG | 1 cut(s) | 468 |
| BsiSI | CCGG | 3 cut(s) | 1075, 1102, 1298 |
| BslFI | GGGAC | 1 cut(s) | 766 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 772, 901, 1074, 1558 |
| BsmAI | GTCTC | 1 cut(s) | 1064 |
| BsmFI | GGGAC | 1 cut(s) | 766 |
| BsmI | GAATGC | 2 cut(s) | 1295, 1443 |
| BsnI | GGCC | 5 cut(s) | 202, 776, 907, 1101, 1113 |
| Bso31I | GGTCTC | 1 cut(s) | 1064 |
| BsoBI | CYCGRG | 1 cut(s) | 468 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1238, 1262 |
| Bsp143I | GATC | 3 cut(s) | 499, 607, 1561 |
| Bsp19I | CCATGG | 1 cut(s) | 1186 |
| BspACI | CCGC | 3 cut(s) | 230, 1242, 1552 |
| BspANI | GGCC | 5 cut(s) | 202, 776, 907, 1101, 1113 |
| BspCNI | CTCAG | 3 cut(s) | 943, 1432, 1548 |
| BspHI | TCATGA | 1 cut(s) | 670 |
| BspLI | GGNNCC | 2 cut(s) | 906, 1124 |
| BspMI | ACCTGC | 2 cut(s) | 399, 1134 |
| BspPI | GGATC | 3 cut(s) | 494, 602, 1569 |
| BspT107I | GGYRCC | 1 cut(s) | 1122 |
| BspTNI | GGTCTC | 1 cut(s) | 1064 |
| BsrDI | GCAATG | 1 cut(s) | 970 |
| BsrFI | RCCGGY | 3 cut(s) | 1074, 1101, 1297 |
| BsrI | ACTGG | 4 cut(s) | 159, 1036, 1352, 1426 |
| BssAI | RCCGGY | 3 cut(s) | 1074, 1101, 1297 |
| BssECI | CCNNGG | 2 cut(s) | 865, 1186 |
| BssMI | GATC | 3 cut(s) | 499, 607, 1561 |
| BssNI | GRCGYC | 1 cut(s) | 111 |
| BssT1I | CCWWGG | 2 cut(s) | 865, 1186 |
| Bst4CI | ACNGT | 2 cut(s) | 292, 1329 |
| Bst6I | CTCTTC | 1 cut(s) | 175 |
| BstACI | GRCGYC | 1 cut(s) | 111 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1227 |
| BstC8I | GCNNGC | 4 cut(s) | 1099, 1103, 1258, 1295 |
| BstDEI | CTNAG | 3 cut(s) | 930, 1419, 1535 |
| BstDSI | CCRYGG | 1 cut(s) | 1186 |
| BstF5I | GGATG | 3 cut(s) | 244, 449, 844 |
| BstKTI | GATC | 3 cut(s) | 502, 610, 1564 |
| BstMAI | GTCTC | 1 cut(s) | 1064 |
| BstMBI | GATC | 3 cut(s) | 499, 607, 1561 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 108, 239, 374, 434, 1094, 1227, 1283 |
| BstSFI | CTRYAG | 1 cut(s) | 651 |
| BstSLI | GKGCMC | 1 cut(s) | 1238 |
| BstV1I | GCAGC | 3 cut(s) | 245, 451, 1092 |
| BstX2I | RGATCY | 2 cut(s) | 499, 607 |
| BstYI | RGATCY | 2 cut(s) | 499, 607 |
| BsuRI | GGCC | 5 cut(s) | 202, 776, 907, 1101, 1113 |
| BtgI | CCRYGG | 1 cut(s) | 1186 |
| BtsCI | GGATG | 3 cut(s) | 244, 449, 844 |
| BtsIMutI | CAGTG | 3 cut(s) | 748, 789, 1339 |
| BveI | ACCTGC | 2 cut(s) | 399, 1134 |
| Cac8I | GCNNGC | 4 cut(s) | 1099, 1103, 1258, 1295 |
| CciI | TCATGA | 1 cut(s) | 670 |
| Cfr10I | RCCGGY | 3 cut(s) | 1074, 1101, 1297 |
| Cfr13I | GGNCC | 5 cut(s) | 521, 629, 699, 905, 1484 |
| CseI | GACGC | 1 cut(s) | 100 |
| Csp6I | GTAC | 9 cut(s) | 152, 159, 293, 473, 763, 956, 1123, 1370, 1429 |
| CviAII | CATG | 8 cut(s) | 129, 135, 494, 671, 785, 896, 1109, 1187 |
| CviQI | GTAC | 9 cut(s) | 152, 159, 293, 473, 763, 956, 1123, 1370, 1429 |
| DdeI | CTNAG | 3 cut(s) | 930, 1419, 1535 |
| DpnI | GATC | 3 cut(s) | 501, 609, 1563 |
| DpnII | GATC | 3 cut(s) | 499, 607, 1561 |
| DraI | TTTAAA | 1 cut(s) | 1134 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1351 |
| EaeI | YGGCCR | 2 cut(s) | 774, 1111 |
| Eam1104I | CTCTTC | 1 cut(s) | 175 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1351 |
| EarI | CTCTTC | 1 cut(s) | 175 |
| Eco130I | CCWWGG | 2 cut(s) | 865, 1186 |
| Eco147I | AGGCCT | 1 cut(s) | 202 |
| Eco24I | GRGCYC | 1 cut(s) | 1262 |
| Eco31I | GGTCTC | 1 cut(s) | 1064 |
| Eco47I | GGWCC | 4 cut(s) | 521, 629, 699, 1484 |
| Eco88I | CYCGRG | 1 cut(s) | 468 |
| EcoO109I | RGGNCCY | 1 cut(s) | 905 |
| EcoT14I | CCWWGG | 2 cut(s) | 865, 1186 |
| EcoT22I | ATGCAT | 1 cut(s) | 1443 |
| EcoT38I | GRGCYC | 1 cut(s) | 1262 |
| ErhI | CCWWGG | 2 cut(s) | 865, 1186 |
| FaeI | CATG | 8 cut(s) | 132, 138, 497, 674, 788, 899, 1112, 1190 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1214, 1246 |
| FaqI | GGGAC | 1 cut(s) | 766 |
| FatI | CATG | 8 cut(s) | 128, 134, 493, 670, 784, 895, 1108, 1186 |
| Fnu4HI | GCNGC | 4 cut(s) | 231, 234, 465, 1106 |
| FokI | GGATG | 3 cut(s) | 231, 436, 831 |
| FriOI | GRGCYC | 1 cut(s) | 1262 |
| Fsp4HI | GCNGC | 4 cut(s) | 231, 234, 465, 1106 |
| FspBI | CTAG | 3 cut(s) | 80, 179, 204 |
| GluI | GCNGC | 4 cut(s) | 231, 234, 465, 1106 |
| GsaI | CCCAGC | 1 cut(s) | 1242 |
| GsuI | CTGGAG | 1 cut(s) | 459 |
| HaeIII | GGCC | 5 cut(s) | 202, 776, 907, 1101, 1113 |
| HapII | CCGG | 3 cut(s) | 1075, 1102, 1298 |
| HgaI | GACGC | 1 cut(s) | 100 |
| Hin1I | GRCGYC | 1 cut(s) | 111 |
| Hin1II | CATG | 8 cut(s) | 132, 138, 497, 674, 788, 899, 1112, 1190 |
| HincII | GTYRAC | 1 cut(s) | 817 |
| HindII | GTYRAC | 1 cut(s) | 817 |
| HinfI | GANTC | 7 cut(s) | 76, 272, 779, 794, 856, 984, 1202 |
| HpaII | CCGG | 3 cut(s) | 1075, 1102, 1298 |
| HphI | GGTGA | 5 cut(s) | 27, 368, 760, 1317, 1489 |
| Hpy166II | GTNNAC | 1 cut(s) | 817 |
| Hpy188I | TCNGA | 8 cut(s) | 277, 382, 483, 838, 979, 1028, 1312, 1422 |
| Hpy188III | TCNNGA | 7 cut(s) | 503, 583, 599, 671, 1013, 1303, 1537 |
| Hpy8I | GTNNAC | 1 cut(s) | 817 |
| HpyAV | CCTTC | 9 cut(s) | 270, 596, 654, 974, 1002, 1099, 1372, 1447, 1497 |
| HpyCH4III | ACNGT | 2 cut(s) | 292, 1329 |
| HpyCH4IV | ACGT | 3 cut(s) | 104, 150, 1503 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 108, 239, 374, 434, 1094, 1227, 1283 |
| HpyF3I | CTNAG | 3 cut(s) | 930, 1419, 1535 |
| HpySE526I | ACGT | 3 cut(s) | 104, 150, 1503 |
| Hsp92I | GRCGYC | 1 cut(s) | 111 |
| Hsp92II | CATG | 8 cut(s) | 132, 138, 497, 674, 788, 899, 1112, 1190 |
| KpnI | GGTACC | 1 cut(s) | 1126 |
| KroI | GCCGGC | 1 cut(s) | 1101 |
| KroNI | GCCGGC | 1 cut(s) | 1103 |
| Kzo9I | GATC | 3 cut(s) | 499, 607, 1561 |
| Lsp1109I | GCAGC | 3 cut(s) | 245, 451, 1092 |
| LweI | GCATC | 2 cut(s) | 386, 458 |
| MaeI | CTAG | 3 cut(s) | 80, 179, 204 |
| MaeII | ACGT | 3 cut(s) | 104, 150, 1503 |
| MaeIII | GTNAC | 4 cut(s) | 112, 146, 557, 1244 |
| MalI | GATC | 3 cut(s) | 501, 609, 1563 |
| MboI | GATC | 3 cut(s) | 499, 607, 1561 |
| MboII | GAAGA | 9 cut(s) | 42, 51, 54, 57, 162, 290, 509, 725, 909 |
| MflI | RGATCY | 2 cut(s) | 499, 607 |
| MhlI | GDGCHC | 2 cut(s) | 1238, 1262 |
| MlsI | TGGCCA | 1 cut(s) | 1113 |
| MluCI | AATT | 6 cut(s) | 312, 350, 360, 1080, 1266, 1315 |
| MluNI | TGGCCA | 1 cut(s) | 1113 |
| MlyI | GAGTC | 2 cut(s) | 788, 1211 |
| Mox20I | TGGCCA | 1 cut(s) | 1113 |
| Mph1103I | ATGCAT | 1 cut(s) | 1443 |
| MroNI | GCCGGC | 1 cut(s) | 1101 |
| MscI | TGGCCA | 1 cut(s) | 1113 |
| MseI | TTAA | 3 cut(s) | 363, 1133, 1211 |
| MslI | CAYNNNNRTG | 1 cut(s) | 133 |
| Msp20I | TGGCCA | 1 cut(s) | 1113 |
| MspA1I | CMGCKG | 1 cut(s) | 1242 |
| MspI | CCGG | 3 cut(s) | 1075, 1102, 1298 |
| Mva1269I | GAATGC | 2 cut(s) | 1295, 1443 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 108, 239, 374, 434, 1094, 1227, 1283 |
| NaeI | GCCGGC | 1 cut(s) | 1103 |
| NcoI | CCATGG | 1 cut(s) | 1186 |
| NdeII | GATC | 3 cut(s) | 499, 607, 1561 |
| NgoMIV | GCCGGC | 1 cut(s) | 1101 |
| NlaIII | CATG | 8 cut(s) | 132, 138, 497, 674, 788, 899, 1112, 1190 |
| NlaIV | GGNNCC | 2 cut(s) | 906, 1124 |
| NmeAIII | GCCGAG | 1 cut(s) | 802 |
| NmuCI | GTSAC | 1 cut(s) | 112 |
| NsiI | ATGCAT | 1 cut(s) | 1443 |
| PaeR7I | CTCGAG | 1 cut(s) | 468 |
| PagI | TCATGA | 1 cut(s) | 670 |
| PceI | AGGCCT | 1 cut(s) | 202 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1290 |
| PctI | GAATGC | 2 cut(s) | 1295, 1443 |
| PdiI | GCCGGC | 1 cut(s) | 1103 |
| PfeI | GAWTC | 5 cut(s) | 76, 272, 794, 856, 984 |
| PflFI | GACNNNGTC | 1 cut(s) | 821 |
| PkrI | GCNGC | 4 cut(s) | 232, 235, 466, 1107 |
| PleI | GAGTC | 2 cut(s) | 787, 1210 |
| PpsI | GAGTC | 2 cut(s) | 787, 1210 |
| PshBI | ATTAAT | 1 cut(s) | 363 |
| PspFI | CCCAGC | 1 cut(s) | 1238 |
| PspN4I | GGNNCC | 2 cut(s) | 906, 1124 |
| PspPI | GGNCC | 5 cut(s) | 521, 629, 699, 905, 1484 |
| PspXI | VCTCGAGB | 1 cut(s) | 468 |
| PsuI | RGATCY | 2 cut(s) | 499, 607 |
| PsyI | GACNNNGTC | 1 cut(s) | 821 |
| RsaI | GTAC | 9 cut(s) | 153, 160, 294, 474, 764, 957, 1124, 1371, 1430 |
| RsaNI | GTAC | 9 cut(s) | 152, 159, 293, 473, 763, 956, 1123, 1370, 1429 |
| RseI | CAYNNNNRTG | 1 cut(s) | 133 |
| SaqAI | TTAA | 3 cut(s) | 363, 1133, 1211 |
| SatI | GCNGC | 4 cut(s) | 231, 234, 465, 1106 |
| Sau3AI | GATC | 3 cut(s) | 499, 607, 1561 |
| Sau96I | GGNCC | 5 cut(s) | 521, 629, 699, 905, 1484 |
| ScaI | AGTACT | 1 cut(s) | 1430 |
| SchI | GAGTC | 2 cut(s) | 788, 1211 |
| SduI | GDGCHC | 2 cut(s) | 1238, 1262 |
| SfaNI | GCATC | 2 cut(s) | 386, 458 |
| SfcI | CTRYAG | 1 cut(s) | 651 |
| Sfr274I | CTCGAG | 1 cut(s) | 468 |
| SinI | GGWCC | 4 cut(s) | 521, 629, 699, 1484 |
| SlaI | CTCGAG | 1 cut(s) | 468 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 133 |
| SmlI | CTYRAG | 4 cut(s) | 210, 468, 516, 1432 |
| SmoI | CTYRAG | 4 cut(s) | 210, 468, 516, 1432 |
| Sse9I | AATT | 6 cut(s) | 312, 350, 360, 1080, 1266, 1315 |
| SseBI | AGGCCT | 1 cut(s) | 202 |
| SsiI | CCGC | 3 cut(s) | 230, 1242, 1552 |
| SspMI | CTAG | 3 cut(s) | 80, 179, 204 |
| StuI | AGGCCT | 1 cut(s) | 202 |
| StyI | CCWWGG | 2 cut(s) | 865, 1186 |
| TaaI | ACNGT | 2 cut(s) | 292, 1329 |
| TaiI | ACGT | 3 cut(s) | 107, 153, 1506 |
| TaqI | TCGA | 3 cut(s) | 469, 859, 1569 |
| TasI | AATT | 6 cut(s) | 312, 350, 360, 1080, 1266, 1315 |
| TatI | WGTACW | 3 cut(s) | 292, 1369, 1428 |
| TauI | GCSGC | 1 cut(s) | 233 |
| TfiI | GAWTC | 5 cut(s) | 76, 272, 794, 856, 984 |
| Tru1I | TTAA | 3 cut(s) | 363, 1133, 1211 |
| Tru9I | TTAA | 3 cut(s) | 363, 1133, 1211 |
| TscAI | CASTG | 3 cut(s) | 748, 796, 1339 |
| TseFI | GTSAC | 1 cut(s) | 112 |
| TseI | GCWGC | 3 cut(s) | 233, 464, 1105 |
| Tsp45I | GTSAC | 1 cut(s) | 112 |
| TspRI | CASTG | 3 cut(s) | 748, 796, 1339 |
| Tth111I | GACNNNGTC | 1 cut(s) | 821 |
| VpaK11BI | GGWCC | 4 cut(s) | 521, 629, 699, 1484 |
| VspI | ATTAAT | 1 cut(s) | 363 |
| XapI | RAATTY | 1 cut(s) | 350 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1028, 1184 |
| XhoI | CTCGAG | 1 cut(s) | 468 |
| XspI | CTAG | 3 cut(s) | 80, 179, 204 |
| ZrmI | AGTACT | 1 cut(s) | 1430 |
| Zsp2I | ATGCAT | 1 cut(s) | 1443 |