Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 181 |
| AccI | GTMKAC | 1 cut(s) | 65 |
| AciI | CCGC | 1 cut(s) | 78 |
| AclWI | GGATC | 1 cut(s) | 231 |
| AfaI | GTAC | 2 cut(s) | 303, 391 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 84 |
| AgsI | TTSAA | 1 cut(s) | 233 |
| AjnI | CCWGG | 2 cut(s) | 184, 219 |
| AluBI | AGCT | 2 cut(s) | 92, 459 |
| AluI | AGCT | 2 cut(s) | 92, 459 |
| Alw21I | GWGCWC | 1 cut(s) | 114 |
| AlwI | GGATC | 1 cut(s) | 231 |
| ApeKI | GCWGC | 3 cut(s) | 43, 98, 160 |
| BanI | GGYRCC | 1 cut(s) | 181 |
| Bbv12I | GWGCWC | 1 cut(s) | 114 |
| BbvI | GCAGC | 3 cut(s) | 55, 85, 172 |
| BccI | CCATC | 1 cut(s) | 317 |
| BciT130I | CCWGG | 2 cut(s) | 186, 221 |
| BfaI | CTAG | 4 cut(s) | 93, 396, 456, 460 |
| BfmI | CTRYAG | 2 cut(s) | 99, 385 |
| BglII | AGATCT | 1 cut(s) | 198 |
| BisI | GCNGC | 3 cut(s) | 44, 99, 161 |
| BlsI | GCNGC | 3 cut(s) | 45, 100, 162 |
| BmcAI | AGTACT | 1 cut(s) | 391 |
| Bme1390I | CCNGG | 2 cut(s) | 186, 221 |
| BmiI | GGNNCC | 1 cut(s) | 183 |
| BmrFI | CCNGG | 2 cut(s) | 186, 221 |
| Bpu10I | CCTNAGC | 1 cut(s) | 118 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 84 |
| Bse3DI | GCAATG | 1 cut(s) | 61 |
| BseBI | CCWGG | 2 cut(s) | 186, 221 |
| BseGI | GGATG | 2 cut(s) | 295, 328 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 84 |
| BseMI | GCAATG | 1 cut(s) | 61 |
| BseRI | GAGGAG | 1 cut(s) | 115 |
| BseXI | GCAGC | 3 cut(s) | 55, 85, 172 |
| BsgI | GTGCAG | 1 cut(s) | 215 |
| BshNI | GGYRCC | 1 cut(s) | 181 |
| BsiHKAI | GWGCWC | 1 cut(s) | 114 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 84 |
| Bsp1286I | GDGCHC | 1 cut(s) | 114 |
| Bsp1407I | TGTACA | 1 cut(s) | 301 |
| Bsp143I | GATC | 2 cut(s) | 198, 223 |
| BspACI | CCGC | 1 cut(s) | 78 |
| BspLI | GGNNCC | 1 cut(s) | 183 |
| BspMAI | CTGCAG | 1 cut(s) | 103 |
| BspPI | GGATC | 1 cut(s) | 231 |
| BspT107I | GGYRCC | 1 cut(s) | 181 |
| BsrDI | GCAATG | 1 cut(s) | 61 |
| BsrGI | TGTACA | 1 cut(s) | 301 |
| BssMI | GATC | 2 cut(s) | 198, 223 |
| BssNAI | GTATAC | 1 cut(s) | 66 |
| Bst1107I | GTATAC | 1 cut(s) | 66 |
| Bst2UI | CCWGG | 2 cut(s) | 186, 221 |
| Bst4CI | ACNGT | 3 cut(s) | 70, 301, 389 |
| BstAUI | TGTACA | 1 cut(s) | 301 |
| BstC8I | GCNNGC | 5 cut(s) | 174, 213, 217, 275, 279 |
| BstDEI | CTNAG | 1 cut(s) | 118 |
| BstEII | GGTNACC | 1 cut(s) | 137 |
| BstF5I | GGATG | 2 cut(s) | 295, 328 |
| BstKTI | GATC | 2 cut(s) | 201, 226 |
| BstMBI | GATC | 2 cut(s) | 198, 223 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 98, 169, 434 |
| BstNI | CCWGG | 2 cut(s) | 186, 221 |
| BstNSI | RCATGY | 1 cut(s) | 245 |
| BstPI | GGTNACC | 1 cut(s) | 137 |
| BstSCI | CCNGG | 2 cut(s) | 184, 219 |
| BstSFI | CTRYAG | 2 cut(s) | 99, 385 |
| BstV1I | GCAGC | 3 cut(s) | 55, 85, 172 |
| BstX2I | RGATCY | 1 cut(s) | 198 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 412 |
| BstYI | RGATCY | 1 cut(s) | 198 |
| BstZ17I | GTATAC | 1 cut(s) | 66 |
| BtsCI | GGATG | 2 cut(s) | 295, 328 |
| BtsI | GCAGTG | 1 cut(s) | 108 |
| BtsIMutI | CAGTG | 2 cut(s) | 108, 243 |
| Cac8I | GCNNGC | 5 cut(s) | 174, 213, 217, 275, 279 |
| CseI | GACGC | 1 cut(s) | 152 |
| Csp6I | GTAC | 2 cut(s) | 302, 390 |
| CviAII | CATG | 3 cut(s) | 134, 242, 308 |
| CviJI | RGCY | 7 cut(s) | 46, 92, 98, 122, 354, 416, 459 |
| CviKI_1 | RGCY | 7 cut(s) | 46, 92, 98, 122, 354, 416, 459 |
| CviQI | GTAC | 2 cut(s) | 302, 390 |
| DdeI | CTNAG | 1 cut(s) | 118 |
| DpnI | GATC | 2 cut(s) | 200, 225 |
| DpnII | GATC | 2 cut(s) | 198, 223 |
| Eco91I | GGTNACC | 1 cut(s) | 137 |
| EcoO65I | GGTNACC | 1 cut(s) | 137 |
| EcoRII | CCWGG | 2 cut(s) | 184, 219 |
| FaeI | CATG | 3 cut(s) | 137, 245, 311 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 18, 50 |
| FatI | CATG | 3 cut(s) | 133, 241, 307 |
| FblI | GTMKAC | 1 cut(s) | 65 |
| Fnu4HI | GCNGC | 3 cut(s) | 44, 99, 161 |
| FokI | GGATG | 2 cut(s) | 302, 335 |
| Fsp4HI | GCNGC | 3 cut(s) | 44, 99, 161 |
| FspBI | CTAG | 4 cut(s) | 93, 396, 456, 460 |
| GluI | GCNGC | 3 cut(s) | 44, 99, 161 |
| HgaI | GACGC | 1 cut(s) | 152 |
| Hin1II | CATG | 3 cut(s) | 137, 245, 311 |
| HincII | GTYRAC | 1 cut(s) | 14 |
| HindII | GTYRAC | 1 cut(s) | 14 |
| HinfI | GANTC | 2 cut(s) | 10, 233 |
| Hpy166II | GTNNAC | 3 cut(s) | 14, 66, 304 |
| Hpy8I | GTNNAC | 3 cut(s) | 14, 66, 304 |
| HpyCH4III | ACNGT | 3 cut(s) | 70, 301, 389 |
| HpyCH4V | TGCA | 4 cut(s) | 101, 196, 241, 277 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 98, 169, 434 |
| HpyF3I | CTNAG | 1 cut(s) | 118 |
| Hsp92II | CATG | 3 cut(s) | 137, 245, 311 |
| Kzo9I | GATC | 2 cut(s) | 198, 223 |
| LmnI | GCTCC | 1 cut(s) | 109 |
| LpnPI | CCDG | 8 cut(s) | 60, 171, 198, 206, 233, 302, 336, 414 |
| Lsp1109I | GCAGC | 3 cut(s) | 55, 85, 172 |
| MaeI | CTAG | 4 cut(s) | 93, 396, 456, 460 |
| MaeIII | GTNAC | 1 cut(s) | 137 |
| MalI | GATC | 2 cut(s) | 200, 225 |
| MboI | GATC | 2 cut(s) | 198, 223 |
| MflI | RGATCY | 1 cut(s) | 198 |
| MhlI | GDGCHC | 1 cut(s) | 114 |
| MluCI | AATT | 3 cut(s) | 258, 432, 439 |
| MlyI | GAGTC | 1 cut(s) | 19 |
| MmeI | TCCRAC | 1 cut(s) | 87 |
| MnlI | CCTC | 2 cut(s) | 133, 136 |
| MseI | TTAA | 1 cut(s) | 246 |
| MspR9I | CCNGG | 2 cut(s) | 186, 221 |
| MvaI | CCWGG | 2 cut(s) | 186, 221 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 98, 169, 434 |
| NdeII | GATC | 2 cut(s) | 198, 223 |
| NlaIII | CATG | 3 cut(s) | 137, 245, 311 |
| NlaIV | GGNNCC | 1 cut(s) | 183 |
| NspI | RCATGY | 1 cut(s) | 245 |
| PfeI | GAWTC | 1 cut(s) | 233 |
| PkrI | GCNGC | 3 cut(s) | 45, 100, 162 |
| PleI | GAGTC | 1 cut(s) | 18 |
| PpsI | GAGTC | 1 cut(s) | 18 |
| Psp6I | CCWGG | 2 cut(s) | 184, 219 |
| PspEI | GGTNACC | 1 cut(s) | 137 |
| PspGI | CCWGG | 2 cut(s) | 184, 219 |
| PspN4I | GGNNCC | 1 cut(s) | 183 |
| PstI | CTGCAG | 1 cut(s) | 103 |
| PsuI | RGATCY | 1 cut(s) | 198 |
| RsaI | GTAC | 2 cut(s) | 303, 391 |
| RsaNI | GTAC | 2 cut(s) | 302, 390 |
| SaqAI | TTAA | 1 cut(s) | 246 |
| SatI | GCNGC | 3 cut(s) | 44, 99, 161 |
| Sau3AI | GATC | 2 cut(s) | 198, 223 |
| ScaI | AGTACT | 1 cut(s) | 391 |
| SchI | GAGTC | 1 cut(s) | 19 |
| ScrFI | CCNGG | 2 cut(s) | 186, 221 |
| SduI | GDGCHC | 1 cut(s) | 114 |
| SetI | ASST | 6 cut(s) | 24, 94, 119, 183, 195, 461 |
| SfcI | CTRYAG | 2 cut(s) | 99, 385 |
| Sse9I | AATT | 3 cut(s) | 258, 432, 439 |
| SsiI | CCGC | 1 cut(s) | 78 |
| SspMI | CTAG | 4 cut(s) | 93, 396, 456, 460 |
| StyD4I | CCNGG | 2 cut(s) | 184, 219 |
| TaaI | ACNGT | 3 cut(s) | 70, 301, 389 |
| TaqI | TCGA | 2 cut(s) | 226, 421 |
| TasI | AATT | 3 cut(s) | 258, 432, 439 |
| TatI | WGTACW | 2 cut(s) | 301, 389 |
| TfiI | GAWTC | 1 cut(s) | 233 |
| Tru1I | TTAA | 1 cut(s) | 246 |
| Tru9I | TTAA | 1 cut(s) | 246 |
| TscAI | CASTG | 2 cut(s) | 108, 243 |
| TseI | GCWGC | 3 cut(s) | 43, 98, 160 |
| TspDTI | ATGAA | 2 cut(s) | 324, 459 |
| TspRI | CASTG | 2 cut(s) | 108, 243 |
| XceI | RCATGY | 1 cut(s) | 245 |
| XmiI | GTMKAC | 1 cut(s) | 65 |
| XspI | CTAG | 4 cut(s) | 93, 396, 456, 460 |
| ZrmI | AGTACT | 1 cut(s) | 391 |