ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 12 - 109 | 2.8e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 127 |
| AclWI | GGATC | 1 cut(s) | 276 |
| AcyI | GRCGYC | 1 cut(s) | 22 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 17, 18, 97, 291, 377 |
| AluBI | AGCT | 3 cut(s) | 8, 48, 119 |
| AluI | AGCT | 3 cut(s) | 8, 48, 119 |
| AlwI | GGATC | 1 cut(s) | 276 |
| AoxI | GGCC | 1 cut(s) | 53 |
| ApeKI | GCWGC | 3 cut(s) | 5, 116, 254 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 218 |
| AspLEI | GCGC | 1 cut(s) | 127 |
| AsuC2I | CCSGG | 1 cut(s) | 19 |
| AsuHPI | GGTGA | 2 cut(s) | 194, 360 |
| BbvI | GCAGC | 3 cut(s) | 17, 128, 241 |
| BccI | CCATC | 2 cut(s) | 35, 95 |
| BcnI | CCSGG | 1 cut(s) | 19 |
| BfmI | CTRYAG | 1 cut(s) | 49 |
| BisI | GCNGC | 3 cut(s) | 6, 117, 255 |
| BlsI | GCNGC | 3 cut(s) | 7, 118, 256 |
| Bme1390I | CCNGG | 1 cut(s) | 19 |
| BmrFI | CCNGG | 1 cut(s) | 19 |
| BmsI | GCATC | 1 cut(s) | 371 |
| BpmI | CTGGAG | 2 cut(s) | 204, 371 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BpuMI | CCSGG | 1 cut(s) | 19 |
| Bsa29I | ATCGAT | 1 cut(s) | 280 |
| BsaHI | GRCGYC | 1 cut(s) | 22 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 17, 18, 97, 291, 377 |
| BseCI | ATCGAT | 1 cut(s) | 280 |
| BseGI | GGATG | 3 cut(s) | 46, 106, 386 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 17, 18, 97, 291, 377 |
| BseXI | GCAGC | 3 cut(s) | 17, 128, 241 |
| Bsh1236I | CGCG | 1 cut(s) | 127 |
| BshFI | GGCC | 1 cut(s) | 55 |
| BshVI | ATCGAT | 1 cut(s) | 280 |
| BsiSI | CCGG | 2 cut(s) | 18, 194 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 17, 18, 97, 291, 377 |
| BsmI | GAATGC | 1 cut(s) | 220 |
| BsnI | GGCC | 1 cut(s) | 55 |
| Bsp143I | GATC | 2 cut(s) | 277, 281 |
| BspANI | GGCC | 1 cut(s) | 55 |
| BspDI | ATCGAT | 1 cut(s) | 280 |
| BspFNI | CGCG | 1 cut(s) | 127 |
| BspPI | GGATC | 1 cut(s) | 276 |
| BssMI | GATC | 2 cut(s) | 277, 281 |
| BssNI | GRCGYC | 1 cut(s) | 22 |
| BstACI | GRCGYC | 1 cut(s) | 22 |
| BstF5I | GGATG | 3 cut(s) | 46, 106, 386 |
| BstFNI | CGCG | 1 cut(s) | 127 |
| BstHHI | GCGC | 1 cut(s) | 127 |
| BstKTI | GATC | 2 cut(s) | 280, 284 |
| BstMBI | GATC | 2 cut(s) | 277, 281 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 122, 179 |
| BstSCI | CCNGG | 1 cut(s) | 17 |
| BstSFI | CTRYAG | 1 cut(s) | 49 |
| BstUI | CGCG | 1 cut(s) | 127 |
| BstV1I | GCAGC | 3 cut(s) | 17, 128, 241 |
| Bsu15I | ATCGAT | 1 cut(s) | 280 |
| BsuRI | GGCC | 1 cut(s) | 55 |
| BsuTUI | ATCGAT | 1 cut(s) | 280 |
| BtsCI | GGATG | 3 cut(s) | 46, 106, 386 |
| CfoI | GCGC | 1 cut(s) | 127 |
| ClaI | ATCGAT | 1 cut(s) | 280 |
| CseI | GACGC | 1 cut(s) | 11 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 231, 266 |
| CviAII | CATG | 2 cut(s) | 140, 308 |
| CviJI | RGCY | 9 cut(s) | 8, 48, 55, 119, 173, 182, 254, 341, 349 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 48, 55, 119, 173, 182, 254, 341, 349 |
| DpnI | GATC | 2 cut(s) | 279, 283 |
| DpnII | GATC | 2 cut(s) | 277, 281 |
| Eco147I | AGGCCT | 1 cut(s) | 55 |
| FaeI | CATG | 2 cut(s) | 143, 311 |
| FatI | CATG | 2 cut(s) | 139, 307 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 117, 255 |
| FokI | GGATG | 2 cut(s) | 53, 113 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 117, 255 |
| GlaI | GCGC | 1 cut(s) | 126 |
| GluI | GCNGC | 3 cut(s) | 6, 117, 255 |
| GsuI | CTGGAG | 2 cut(s) | 204, 371 |
| HaeIII | GGCC | 1 cut(s) | 55 |
| HapII | CCGG | 2 cut(s) | 18, 194 |
| HgaI | GACGC | 1 cut(s) | 11 |
| HhaI | GCGC | 1 cut(s) | 127 |
| Hin1I | GRCGYC | 1 cut(s) | 22 |
| Hin1II | CATG | 2 cut(s) | 143, 311 |
| Hin6I | GCGC | 1 cut(s) | 125 |
| HinP1I | GCGC | 1 cut(s) | 125 |
| HinfI | GANTC | 1 cut(s) | 81 |
| HpaII | CCGG | 2 cut(s) | 18, 194 |
| HphI | GGTGA | 2 cut(s) | 194, 360 |
| Hpy188I | TCNGA | 1 cut(s) | 286 |
| HpyAV | CCTTC | 2 cut(s) | 229, 395 |
| HpyCH4IV | ACGT | 1 cut(s) | 36 |
| HpyCH4V | TGCA | 1 cut(s) | 116 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 122, 179 |
| HpySE526I | ACGT | 1 cut(s) | 36 |
| Hsp92I | GRCGYC | 1 cut(s) | 22 |
| Hsp92II | CATG | 2 cut(s) | 143, 311 |
| HspAI | GCGC | 1 cut(s) | 125 |
| Kzo9I | GATC | 2 cut(s) | 277, 281 |
| LmnI | GCTCC | 1 cut(s) | 13 |
| LpnPI | CCDG | 4 cut(s) | 31, 168, 207, 335 |
| Lsp1109I | GCAGC | 3 cut(s) | 17, 128, 241 |
| LweI | GCATC | 1 cut(s) | 371 |
| MaeII | ACGT | 1 cut(s) | 36 |
| MaeIII | GTNAC | 1 cut(s) | 258 |
| MalI | GATC | 2 cut(s) | 279, 283 |
| MboI | GATC | 2 cut(s) | 277, 281 |
| MboII | GAAGA | 3 cut(s) | 182, 287, 349 |
| MluCI | AATT | 3 cut(s) | 58, 198, 364 |
| MmeI | TCCRAC | 1 cut(s) | 309 |
| MnlI | CCTC | 4 cut(s) | 147, 157, 315, 325 |
| MroXI | GAANNNNTTC | 1 cut(s) | 218 |
| MspI | CCGG | 2 cut(s) | 18, 194 |
| MspR9I | CCNGG | 1 cut(s) | 19 |
| Mva1269I | GAATGC | 1 cut(s) | 220 |
| MvnI | CGCG | 1 cut(s) | 127 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 122, 179 |
| NciI | CCSGG | 1 cut(s) | 19 |
| NdeII | GATC | 2 cut(s) | 277, 281 |
| NlaIII | CATG | 2 cut(s) | 143, 311 |
| PceI | AGGCCT | 1 cut(s) | 55 |
| PctI | GAATGC | 1 cut(s) | 220 |
| PdmI | GAANNNNTTC | 1 cut(s) | 218 |
| PfeI | GAWTC | 1 cut(s) | 81 |
| PkrI | GCNGC | 3 cut(s) | 7, 118, 256 |
| SatI | GCNGC | 3 cut(s) | 6, 117, 255 |
| Sau3AI | GATC | 2 cut(s) | 277, 281 |
| ScrFI | CCNGG | 1 cut(s) | 19 |
| SetI | ASST | 6 cut(s) | 10, 39, 50, 121, 228, 394 |
| SfaNI | GCATC | 1 cut(s) | 371 |
| SfcI | CTRYAG | 1 cut(s) | 49 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 3 cut(s) | 58, 198, 364 |
| SseBI | AGGCCT | 1 cut(s) | 55 |
| SspI | AATATT | 2 cut(s) | 209, 375 |
| StuI | AGGCCT | 1 cut(s) | 55 |
| StyD4I | CCNGG | 1 cut(s) | 17 |
| TaiI | ACGT | 1 cut(s) | 39 |
| TaqI | TCGA | 4 cut(s) | 63, 222, 280, 388 |
| TasI | AATT | 3 cut(s) | 58, 198, 364 |
| TfiI | GAWTC | 1 cut(s) | 81 |
| TseI | GCWGC | 3 cut(s) | 5, 116, 254 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 98 |
| XmnI | GAANNNNTTC | 1 cut(s) | 218 |