ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 52 - 121 | 1.9e-14 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 87 |
| AccB1I | GGYRCC | 1 cut(s) | 87 |
| AclI | AACGTT | 1 cut(s) | 236 |
| AcyI | GRCGYC | 1 cut(s) | 220 |
| AfaI | GTAC | 4 cut(s) | 89, 192, 204, 399 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 480 |
| AflIII | ACRYGT | 1 cut(s) | 325 |
| AgsI | TTSAA | 1 cut(s) | 334 |
| AjiI | CACGTC | 1 cut(s) | 283 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 355, 387 |
| AluBI | AGCT | 6 cut(s) | 175, 251, 321, 454, 458, 492 |
| AluI | AGCT | 6 cut(s) | 175, 251, 321, 454, 458, 492 |
| Ama87I | CYCGRG | 1 cut(s) | 246 |
| ApeKI | GCWGC | 1 cut(s) | 251 |
| Asp718I | GGTACC | 1 cut(s) | 87 |
| AspA2I | CCTAGG | 1 cut(s) | 142 |
| AspS9I | GGNCC | 1 cut(s) | 268 |
| AsuNHI | GCTAGC | 1 cut(s) | 454 |
| AvaI | CYCGRG | 1 cut(s) | 246 |
| AvaII | GGWCC | 1 cut(s) | 268 |
| AvrII | CCTAGG | 1 cut(s) | 142 |
| AxyI | CCTNAGG | 1 cut(s) | 198 |
| BanI | GGYRCC | 1 cut(s) | 87 |
| BauI | CACGAG | 1 cut(s) | 99 |
| BbvI | GCAGC | 1 cut(s) | 238 |
| BccI | CCATC | 1 cut(s) | 483 |
| BceAI | ACGGC | 1 cut(s) | 141 |
| BfaI | CTAG | 4 cut(s) | 143, 438, 455, 489 |
| BisI | GCNGC | 1 cut(s) | 252 |
| BlnI | CCTAGG | 1 cut(s) | 142 |
| BlsI | GCNGC | 1 cut(s) | 253 |
| Bme18I | GGWCC | 1 cut(s) | 268 |
| BmeT110I | CYCGRG | 1 cut(s) | 246 |
| BmgBI | CACGTC | 1 cut(s) | 283 |
| BmgT120I | GGNCC | 1 cut(s) | 268 |
| BmiI | GGNNCC | 2 cut(s) | 89, 269 |
| BmsI | GCATC | 3 cut(s) | 137, 354, 376 |
| BmtI | GCTAGC | 1 cut(s) | 458 |
| BpmI | CTGGAG | 1 cut(s) | 434 |
| BpuEI | CTTGAG | 1 cut(s) | 121 |
| BsaAI | YACGTR | 1 cut(s) | 206 |
| BsaHI | GRCGYC | 1 cut(s) | 220 |
| BsaJI | CCNNGG | 2 cut(s) | 142, 479 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 58, 88 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 480 |
| Bse21I | CCTNAGG | 1 cut(s) | 198 |
| BseDI | CCNNGG | 2 cut(s) | 142, 479 |
| BseGI | GGATG | 2 cut(s) | 369, 475 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 480 |
| BseMII | CTCAG | 1 cut(s) | 291 |
| BseXI | GCAGC | 1 cut(s) | 238 |
| BseYI | CCCAGC | 1 cut(s) | 376 |
| BsgI | GTGCAG | 1 cut(s) | 481 |
| BshNI | GGYRCC | 1 cut(s) | 87 |
| BsiHKCI | CYCGRG | 1 cut(s) | 246 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 480 |
| BsoBI | CYCGRG | 1 cut(s) | 246 |
| Bsp143I | GATC | 1 cut(s) | 151 |
| BspCNI | CTCAG | 1 cut(s) | 290 |
| BspLI | GGNNCC | 2 cut(s) | 89, 269 |
| BspOI | GCTAGC | 1 cut(s) | 458 |
| BspT107I | GGYRCC | 1 cut(s) | 87 |
| BssECI | CCNNGG | 2 cut(s) | 142, 479 |
| BssMI | GATC | 1 cut(s) | 151 |
| BssNI | GRCGYC | 1 cut(s) | 220 |
| BssSI | CACGAG | 1 cut(s) | 99 |
| BssT1I | CCWWGG | 2 cut(s) | 142, 479 |
| Bst2BI | CACGAG | 1 cut(s) | 99 |
| Bst4CI | ACNGT | 4 cut(s) | 113, 341, 467, 507 |
| BstACI | GRCGYC | 1 cut(s) | 220 |
| BstBAI | YACGTR | 1 cut(s) | 206 |
| BstC8I | GCNNGC | 2 cut(s) | 213, 456 |
| BstDEI | CTNAG | 3 cut(s) | 14, 198, 277 |
| BstF5I | GGATG | 2 cut(s) | 369, 475 |
| BstKTI | GATC | 1 cut(s) | 154 |
| BstMBI | GATC | 1 cut(s) | 151 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 46, 155, 217, 373 |
| BstNSI | RCATGY | 2 cut(s) | 215, 329 |
| BstSNI | TACGTA | 1 cut(s) | 206 |
| BstV1I | GCAGC | 1 cut(s) | 238 |
| Bsu36I | CCTNAGG | 1 cut(s) | 198 |
| BtrI | CACGTC | 1 cut(s) | 283 |
| BtsCI | GGATG | 2 cut(s) | 369, 475 |
| Cac8I | GCNNGC | 2 cut(s) | 213, 456 |
| Cfr13I | GGNCC | 1 cut(s) | 268 |
| CseI | GACGC | 1 cut(s) | 209 |
| Csp6I | GTAC | 4 cut(s) | 88, 191, 203, 398 |
| CviAII | CATG | 5 cut(s) | 92, 212, 216, 326, 442 |
| CviQI | GTAC | 4 cut(s) | 88, 191, 203, 398 |
| DdeI | CTNAG | 3 cut(s) | 14, 198, 277 |
| DpnI | GATC | 1 cut(s) | 153 |
| DpnII | GATC | 1 cut(s) | 151 |
| Eco105I | TACGTA | 1 cut(s) | 206 |
| Eco130I | CCWWGG | 2 cut(s) | 142, 479 |
| Eco47I | GGWCC | 1 cut(s) | 268 |
| Eco81I | CCTNAGG | 1 cut(s) | 198 |
| Eco88I | CYCGRG | 1 cut(s) | 246 |
| EcoT14I | CCWWGG | 2 cut(s) | 142, 479 |
| EcoT22I | ATGCAT | 3 cut(s) | 213, 217, 369 |
| ErhI | CCWWGG | 2 cut(s) | 142, 479 |
| FaeI | CATG | 5 cut(s) | 95, 215, 219, 329, 445 |
| FatI | CATG | 5 cut(s) | 91, 211, 215, 325, 441 |
| Fnu4HI | GCNGC | 1 cut(s) | 252 |
| FokI | GGATG | 2 cut(s) | 376, 462 |
| Fsp4HI | GCNGC | 1 cut(s) | 252 |
| FspBI | CTAG | 4 cut(s) | 143, 438, 455, 489 |
| GluI | GCNGC | 1 cut(s) | 252 |
| GsaI | CCCAGC | 1 cut(s) | 380 |
| GsuI | CTGGAG | 1 cut(s) | 434 |
| HgaI | GACGC | 1 cut(s) | 209 |
| Hin1I | GRCGYC | 1 cut(s) | 220 |
| Hin1II | CATG | 5 cut(s) | 95, 215, 219, 329, 445 |
| HincII | GTYRAC | 1 cut(s) | 187 |
| HindII | GTYRAC | 1 cut(s) | 187 |
| HpaI | GTTAAC | 1 cut(s) | 187 |
| Hpy166II | GTNNAC | 1 cut(s) | 187 |
| Hpy188I | TCNGA | 1 cut(s) | 280 |
| Hpy188III | TCNNGA | 1 cut(s) | 361 |
| Hpy8I | GTNNAC | 1 cut(s) | 187 |
| HpyCH4III | ACNGT | 4 cut(s) | 113, 341, 467, 507 |
| HpyCH4IV | ACGT | 4 cut(s) | 189, 205, 236, 282 |
| HpyCH4V | TGCA | 6 cut(s) | 211, 215, 367, 393, 404, 498 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 46, 155, 217, 373 |
| HpyF3I | CTNAG | 3 cut(s) | 14, 198, 277 |
| HpySE526I | ACGT | 4 cut(s) | 189, 205, 236, 282 |
| Hsp92I | GRCGYC | 1 cut(s) | 220 |
| Hsp92II | CATG | 5 cut(s) | 95, 215, 219, 329, 445 |
| KpnI | GGTACC | 1 cut(s) | 91 |
| KspAI | GTTAAC | 1 cut(s) | 187 |
| Kzo9I | GATC | 1 cut(s) | 151 |
| LpnPI | CCDG | 6 cut(s) | 117, 209, 346, 362, 403, 464 |
| Lsp1109I | GCAGC | 1 cut(s) | 238 |
| LweI | GCATC | 3 cut(s) | 137, 354, 376 |
| MaeI | CTAG | 4 cut(s) | 143, 438, 455, 489 |
| MaeII | ACGT | 4 cut(s) | 189, 205, 236, 282 |
| MaeIII | GTNAC | 2 cut(s) | 103, 237 |
| MalI | GATC | 1 cut(s) | 153 |
| MboI | GATC | 1 cut(s) | 151 |
| MluCI | AATT | 2 cut(s) | 258, 415 |
| MmeI | TCCRAC | 1 cut(s) | 295 |
| MnlI | CCTC | 7 cut(s) | 20, 21, 60, 114, 204, 258, 307 |
| Mph1103I | ATGCAT | 3 cut(s) | 213, 217, 369 |
| MseI | TTAA | 3 cut(s) | 20, 186, 261 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 46, 155, 217, 373 |
| NdeII | GATC | 1 cut(s) | 151 |
| NheI | GCTAGC | 1 cut(s) | 454 |
| NlaIII | CATG | 5 cut(s) | 95, 215, 219, 329, 445 |
| NlaIV | GGNNCC | 2 cut(s) | 89, 269 |
| NsiI | ATGCAT | 3 cut(s) | 213, 217, 369 |
| NspI | RCATGY | 2 cut(s) | 215, 329 |
| PaeI | GCATGC | 1 cut(s) | 215 |
| PaeR7I | CTCGAG | 1 cut(s) | 246 |
| PciI | ACATGT | 1 cut(s) | 325 |
| PkrI | GCNGC | 1 cut(s) | 253 |
| Ppu21I | YACGTR | 1 cut(s) | 206 |
| PscI | ACATGT | 1 cut(s) | 325 |
| Psp1406I | AACGTT | 1 cut(s) | 236 |
| PspFI | CCCAGC | 1 cut(s) | 376 |
| PspN4I | GGNNCC | 2 cut(s) | 89, 269 |
| PspPI | GGNCC | 1 cut(s) | 268 |
| PspXI | VCTCGAGB | 1 cut(s) | 246 |
| RsaI | GTAC | 4 cut(s) | 89, 192, 204, 399 |
| RsaNI | GTAC | 4 cut(s) | 88, 191, 203, 398 |
| SaqAI | TTAA | 3 cut(s) | 20, 186, 261 |
| SatI | GCNGC | 1 cut(s) | 252 |
| Sau3AI | GATC | 1 cut(s) | 151 |
| Sau96I | GGNCC | 1 cut(s) | 268 |
| SfaNI | GCATC | 3 cut(s) | 137, 354, 376 |
| Sfr274I | CTCGAG | 1 cut(s) | 246 |
| SinI | GGWCC | 1 cut(s) | 268 |
| SlaI | CTCGAG | 1 cut(s) | 246 |
| SmlI | CTYRAG | 2 cut(s) | 136, 246 |
| SmoI | CTYRAG | 2 cut(s) | 136, 246 |
| SnaBI | TACGTA | 1 cut(s) | 206 |
| SphI | GCATGC | 1 cut(s) | 215 |
| Sse9I | AATT | 2 cut(s) | 258, 415 |
| SspMI | CTAG | 4 cut(s) | 143, 438, 455, 489 |
| StyI | CCWWGG | 2 cut(s) | 142, 479 |
| TaaI | ACNGT | 4 cut(s) | 113, 341, 467, 507 |
| TaiI | ACGT | 4 cut(s) | 192, 208, 239, 285 |
| TaqI | TCGA | 1 cut(s) | 247 |
| TasI | AATT | 2 cut(s) | 258, 415 |
| TatI | WGTACW | 1 cut(s) | 397 |
| Tru1I | TTAA | 3 cut(s) | 20, 186, 261 |
| Tru9I | TTAA | 3 cut(s) | 20, 186, 261 |
| TseI | GCWGC | 1 cut(s) | 251 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 122 |
| VpaK11BI | GGWCC | 1 cut(s) | 268 |
| XceI | RCATGY | 2 cut(s) | 215, 329 |
| XhoI | CTCGAG | 1 cut(s) | 246 |
| XmaJI | CCTAGG | 1 cut(s) | 142 |
| XspI | CTAG | 4 cut(s) | 143, 438, 455, 489 |
| Zsp2I | ATGCAT | 3 cut(s) | 213, 217, 369 |