ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 53 - 150 | 3.8e-13 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 177 |
| Acc36I | ACCTGC | 1 cut(s) | 746 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 672 |
| AclWI | GGATC | 2 cut(s) | 137, 461 |
| AcuI | CTGAAG | 1 cut(s) | 228 |
| AfaI | GTAC | 3 cut(s) | 385, 504, 936 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 589, 672, 755 |
| AgsI | TTSAA | 7 cut(s) | 93, 197, 251, 431, 662, 689, 875 |
| AjnI | CCWGG | 1 cut(s) | 725 |
| AluBI | AGCT | 9 cut(s) | 83, 173, 185, 200, 221, 287, 314, 464, 574 |
| AluI | AGCT | 9 cut(s) | 83, 173, 185, 200, 221, 287, 314, 464, 574 |
| Alw26I | GTCTC | 2 cut(s) | 401, 825 |
| AlwI | GGATC | 2 cut(s) | 137, 461 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 290 |
| ApeKI | GCWGC | 2 cut(s) | 461, 529 |
| AseI | ATTAAT | 1 cut(s) | 452 |
| AsuHPI | GGTGA | 1 cut(s) | 659 |
| AsuII | TTCGAA | 1 cut(s) | 395 |
| BbsI | GAAGAC | 1 cut(s) | 234 |
| BbvI | GCAGC | 2 cut(s) | 473, 516 |
| BccI | CCATC | 3 cut(s) | 702, 757, 913 |
| BciT130I | CCWGG | 1 cut(s) | 727 |
| BcoDI | GTCTC | 2 cut(s) | 401, 825 |
| BfaI | CTAG | 4 cut(s) | 533, 584, 713, 949 |
| BfmI | CTRYAG | 2 cut(s) | 639, 753 |
| BfuAI | ACCTGC | 1 cut(s) | 746 |
| BisI | GCNGC | 2 cut(s) | 462, 530 |
| BlsI | GCNGC | 2 cut(s) | 463, 531 |
| Bme1390I | CCNGG | 1 cut(s) | 727 |
| BmrFI | CCNGG | 1 cut(s) | 727 |
| BpiI | GAAGAC | 1 cut(s) | 234 |
| Bpu14I | TTCGAA | 1 cut(s) | 395 |
| BpuEI | CTTGAG | 1 cut(s) | 425 |
| BsaI | GGTCTC | 1 cut(s) | 401 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 589, 672, 755 |
| Bse3DI | GCAATG | 2 cut(s) | 352, 741 |
| BseBI | CCWGG | 1 cut(s) | 727 |
| BseGI | GGATG | 1 cut(s) | 924 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 589, 672, 755 |
| BseMI | GCAATG | 2 cut(s) | 352, 741 |
| BseMII | CTCAG | 2 cut(s) | 213, 849 |
| BseXI | GCAGC | 2 cut(s) | 473, 516 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 589, 672, 755 |
| BsmAI | GTCTC | 2 cut(s) | 401, 825 |
| BsmI | GAATGC | 3 cut(s) | 403, 437, 785 |
| Bso31I | GGTCTC | 1 cut(s) | 401 |
| Bsp119I | TTCGAA | 1 cut(s) | 395 |
| Bsp1407I | TGTACA | 1 cut(s) | 502 |
| Bsp143I | GATC | 2 cut(s) | 142, 466 |
| BspCNI | CTCAG | 2 cut(s) | 214, 848 |
| BspHI | TCATGA | 1 cut(s) | 679 |
| BspMAI | CTGCAG | 1 cut(s) | 757 |
| BspMI | ACCTGC | 1 cut(s) | 746 |
| BspPI | GGATC | 2 cut(s) | 137, 461 |
| BspT104I | TTCGAA | 1 cut(s) | 395 |
| BspTNI | GGTCTC | 1 cut(s) | 401 |
| BsrDI | GCAATG | 2 cut(s) | 352, 741 |
| BsrGI | TGTACA | 1 cut(s) | 502 |
| BssMI | GATC | 2 cut(s) | 142, 466 |
| Bst2UI | CCWGG | 1 cut(s) | 727 |
| Bst4CI | ACNGT | 4 cut(s) | 118, 163, 643, 782 |
| Bst6I | CTCTTC | 1 cut(s) | 198 |
| BstAUI | TGTACA | 1 cut(s) | 502 |
| BstBI | TTCGAA | 1 cut(s) | 395 |
| BstC8I | GCNNGC | 1 cut(s) | 273 |
| BstDEI | CTNAG | 3 cut(s) | 222, 444, 835 |
| BstF5I | GGATG | 1 cut(s) | 924 |
| BstKTI | GATC | 2 cut(s) | 145, 469 |
| BstMAI | GTCTC | 2 cut(s) | 401, 825 |
| BstMBI | GATC | 2 cut(s) | 142, 466 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 320, 432 |
| BstNI | CCWGG | 1 cut(s) | 727 |
| BstNSI | RCATGY | 1 cut(s) | 862 |
| BstSCI | CCNGG | 1 cut(s) | 725 |
| BstSFI | CTRYAG | 2 cut(s) | 639, 753 |
| BstV1I | GCAGC | 2 cut(s) | 473, 516 |
| BstV2I | GAAGAC | 1 cut(s) | 234 |
| BtsCI | GGATG | 1 cut(s) | 924 |
| BtsIMutI | CAGTG | 1 cut(s) | 168 |
| BveI | ACCTGC | 1 cut(s) | 746 |
| Cac8I | GCNNGC | 1 cut(s) | 273 |
| CaiI | CAGNNNCTG | 1 cut(s) | 290 |
| CciI | TCATGA | 1 cut(s) | 679 |
| Csp6I | GTAC | 3 cut(s) | 384, 503, 935 |
| CviAII | CATG | 4 cut(s) | 359, 672, 680, 859 |
| CviQI | GTAC | 3 cut(s) | 384, 503, 935 |
| DdeI | CTNAG | 3 cut(s) | 222, 444, 835 |
| DpnI | GATC | 2 cut(s) | 144, 468 |
| DpnII | GATC | 2 cut(s) | 142, 466 |
| DraI | TTTAAA | 1 cut(s) | 520 |
| Eam1104I | CTCTTC | 1 cut(s) | 198 |
| EarI | CTCTTC | 1 cut(s) | 198 |
| Eco31I | GGTCTC | 1 cut(s) | 401 |
| Eco57I | CTGAAG | 1 cut(s) | 228 |
| EcoRII | CCWGG | 1 cut(s) | 725 |
| EcoT22I | ATGCAT | 1 cut(s) | 673 |
| FaeI | CATG | 4 cut(s) | 362, 675, 683, 862 |
| FatI | CATG | 4 cut(s) | 358, 671, 679, 858 |
| FauNDI | CATATG | 2 cut(s) | 305, 804 |
| Fnu4HI | GCNGC | 2 cut(s) | 462, 530 |
| FokI | GGATG | 1 cut(s) | 931 |
| Fsp4HI | GCNGC | 2 cut(s) | 462, 530 |
| FspBI | CTAG | 4 cut(s) | 533, 584, 713, 949 |
| GluI | GCNGC | 2 cut(s) | 462, 530 |
| Hin1II | CATG | 4 cut(s) | 362, 675, 683, 862 |
| HincII | GTYRAC | 1 cut(s) | 228 |
| HindII | GTYRAC | 1 cut(s) | 228 |
| HindIII | AAGCTT | 3 cut(s) | 198, 312, 572 |
| HinfI | GANTC | 6 cut(s) | 212, 224, 239, 475, 799, 833 |
| HphI | GGTGA | 1 cut(s) | 659 |
| Hpy166II | GTNNAC | 1 cut(s) | 228 |
| Hpy188I | TCNGA | 1 cut(s) | 838 |
| Hpy188III | TCNNGA | 1 cut(s) | 680 |
| Hpy8I | GTNNAC | 1 cut(s) | 228 |
| HpyAV | CCTTC | 5 cut(s) | 33, 331, 448, 570, 833 |
| HpyCH4III | ACNGT | 4 cut(s) | 118, 163, 643, 782 |
| HpyCH4V | TGCA | 7 cut(s) | 293, 303, 352, 401, 671, 755, 785 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 320, 432 |
| HpyF3I | CTNAG | 3 cut(s) | 222, 444, 835 |
| Hsp92II | CATG | 4 cut(s) | 362, 675, 683, 862 |
| Kzo9I | GATC | 2 cut(s) | 142, 466 |
| LpnPI | CCDG | 7 cut(s) | 297, 683, 712, 739, 741, 897, 902 |
| Lsp1109I | GCAGC | 2 cut(s) | 473, 516 |
| MaeI | CTAG | 4 cut(s) | 533, 584, 713, 949 |
| MaeIII | GTNAC | 2 cut(s) | 104, 213 |
| MalI | GATC | 2 cut(s) | 144, 468 |
| MboI | GATC | 2 cut(s) | 142, 466 |
| MboII | GAAGA | 3 cut(s) | 185, 234, 504 |
| MluCI | AATT | 9 cut(s) | 31, 93, 155, 179, 251, 453, 506, 689, 772 |
| MlyI | GAGTC | 5 cut(s) | 221, 233, 248, 793, 827 |
| MmeI | TCCRAC | 1 cut(s) | 796 |
| MnlI | CCTC | 4 cut(s) | 256, 451, 756, 909 |
| Mph1103I | ATGCAT | 1 cut(s) | 673 |
| MseI | TTAA | 6 cut(s) | 30, 51, 363, 452, 519, 771 |
| MslI | CAYNNNNRTG | 3 cut(s) | 357, 421, 807 |
| MspA1I | CMGCKG | 1 cut(s) | 464 |
| MspR9I | CCNGG | 1 cut(s) | 727 |
| Mva1269I | GAATGC | 3 cut(s) | 403, 437, 785 |
| MvaI | CCWGG | 1 cut(s) | 727 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 320, 432 |
| NdeI | CATATG | 2 cut(s) | 305, 804 |
| NdeII | GATC | 2 cut(s) | 142, 466 |
| NlaIII | CATG | 4 cut(s) | 362, 675, 683, 862 |
| NmuCI | GTSAC | 2 cut(s) | 104, 213 |
| NsiI | ATGCAT | 1 cut(s) | 673 |
| NspI | RCATGY | 1 cut(s) | 862 |
| NspV | TTCGAA | 1 cut(s) | 395 |
| PagI | TCATGA | 1 cut(s) | 679 |
| PctI | GAATGC | 3 cut(s) | 403, 437, 785 |
| PfeI | GAWTC | 1 cut(s) | 475 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 672 |
| PfoI | TCCNGGA | 1 cut(s) | 725 |
| PkrI | GCNGC | 2 cut(s) | 463, 531 |
| PleI | GAGTC | 5 cut(s) | 220, 232, 247, 793, 827 |
| PpsI | GAGTC | 5 cut(s) | 220, 232, 247, 793, 827 |
| PshBI | ATTAAT | 1 cut(s) | 452 |
| PsiI | TTATAA | 1 cut(s) | 177 |
| Psp6I | CCWGG | 1 cut(s) | 725 |
| PspGI | CCWGG | 1 cut(s) | 725 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 376, 408 |
| PstI | CTGCAG | 1 cut(s) | 757 |
| PstNI | CAGNNNCTG | 1 cut(s) | 290 |
| PvuII | CAGCTG | 1 cut(s) | 464 |
| RsaI | GTAC | 3 cut(s) | 385, 504, 936 |
| RsaNI | GTAC | 3 cut(s) | 384, 503, 935 |
| RseI | CAYNNNNRTG | 3 cut(s) | 357, 421, 807 |
| SaqAI | TTAA | 6 cut(s) | 30, 51, 363, 452, 519, 771 |
| SatI | GCNGC | 2 cut(s) | 462, 530 |
| Sau3AI | GATC | 2 cut(s) | 142, 466 |
| SchI | GAGTC | 5 cut(s) | 221, 233, 248, 793, 827 |
| ScrFI | CCNGG | 1 cut(s) | 727 |
| SfcI | CTRYAG | 2 cut(s) | 639, 753 |
| SfuI | TTCGAA | 1 cut(s) | 395 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 357, 421, 807 |
| SmlI | CTYRAG | 1 cut(s) | 404 |
| SmoI | CTYRAG | 1 cut(s) | 404 |
| Sse9I | AATT | 9 cut(s) | 31, 93, 155, 179, 251, 453, 506, 689, 772 |
| SspI | AATATT | 1 cut(s) | 280 |
| SspMI | CTAG | 4 cut(s) | 533, 584, 713, 949 |
| StyD4I | CCNGG | 1 cut(s) | 725 |
| TaaI | ACNGT | 4 cut(s) | 118, 163, 643, 782 |
| TaqI | TCGA | 1 cut(s) | 395 |
| TasI | AATT | 9 cut(s) | 31, 93, 155, 179, 251, 453, 506, 689, 772 |
| TatI | WGTACW | 2 cut(s) | 383, 502 |
| TfiI | GAWTC | 1 cut(s) | 475 |
| Tru1I | TTAA | 6 cut(s) | 30, 51, 363, 452, 519, 771 |
| Tru9I | TTAA | 6 cut(s) | 30, 51, 363, 452, 519, 771 |
| TscAI | CASTG | 1 cut(s) | 168 |
| TseFI | GTSAC | 2 cut(s) | 104, 213 |
| TseI | GCWGC | 2 cut(s) | 461, 529 |
| Tsp45I | GTSAC | 2 cut(s) | 104, 213 |
| TspDTI | ATGAA | 3 cut(s) | 4, 467, 668 |
| TspGWI | ACGGA | 1 cut(s) | 459 |
| TspRI | CASTG | 1 cut(s) | 168 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 672 |
| VspI | ATTAAT | 1 cut(s) | 452 |
| XceI | RCATGY | 1 cut(s) | 862 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 756 |
| XspI | CTAG | 4 cut(s) | 533, 584, 713, 949 |
| Zsp2I | ATGCAT | 1 cut(s) | 673 |