Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 926 |
| Acc65I | GGTACC | 1 cut(s) | 812 |
| AccB1I | GGYRCC | 1 cut(s) | 812 |
| AccII | CGCG | 2 cut(s) | 936, 976 |
| AciI | CCGC | 3 cut(s) | 976, 1009, 1040 |
| AclWI | GGATC | 1 cut(s) | 350 |
| AcoI | YGGCCR | 1 cut(s) | 6 |
| AcsI | RAATTY | 1 cut(s) | 692 |
| AcyI | GRCGYC | 2 cut(s) | 923, 1012 |
| AfaI | GTAC | 7 cut(s) | 62, 74, 196, 399, 723, 814, 914 |
| AfeI | AGCGCT | 1 cut(s) | 369 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 15, 459, 732 |
| AflIII | ACRYGT | 3 cut(s) | 316, 418, 934 |
| AgsI | TTSAA | 1 cut(s) | 578 |
| AjnI | CCWGG | 3 cut(s) | 338, 453, 680 |
| AleI | CACNNNNGTG | 1 cut(s) | 272 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 818, 850 |
| AluBI | AGCT | 7 cut(s) | 382, 490, 551, 648, 704, 865, 999 |
| AluI | AGCT | 7 cut(s) | 382, 490, 551, 648, 704, 865, 999 |
| Alw26I | GTCTC | 3 cut(s) | 16, 289, 497 |
| AlwI | GGATC | 1 cut(s) | 350 |
| Aor51HI | AGCGCT | 1 cut(s) | 369 |
| AoxI | GGCC | 2 cut(s) | 6, 336 |
| ApeKI | GCWGC | 5 cut(s) | 853, 945, 996, 1037, 1078 |
| ApoI | RAATTY | 1 cut(s) | 692 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 582, 693 |
| Asp718I | GGTACC | 1 cut(s) | 812 |
| AspLEI | GCGC | 1 cut(s) | 370 |
| AspS9I | GGNCC | 1 cut(s) | 277 |
| AsuC2I | CCSGG | 1 cut(s) | 500 |
| AsuHPI | GGTGA | 5 cut(s) | 122, 200, 365, 497, 1033 |
| AvaII | GGWCC | 1 cut(s) | 277 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 186, 219 |
| BalI | TGGCCA | 1 cut(s) | 8 |
| BanI | GGYRCC | 1 cut(s) | 812 |
| BbvI | GCAGC | 4 cut(s) | 865, 957, 1008, 1049 |
| BccI | CCATC | 3 cut(s) | 46, 127, 185 |
| BceAI | ACGGC | 1 cut(s) | 922 |
| BciT130I | CCWGG | 3 cut(s) | 340, 455, 682 |
| BciVI | GTATCC | 1 cut(s) | 219 |
| BcnI | CCSGG | 1 cut(s) | 500 |
| BcoDI | GTCTC | 3 cut(s) | 16, 289, 497 |
| BfaI | CTAG | 5 cut(s) | 309, 323, 401, 645, 705 |
| BfmI | CTRYAG | 1 cut(s) | 851 |
| BfoI | RGCGCY | 1 cut(s) | 371 |
| BfuI | GTATCC | 1 cut(s) | 219 |
| BisI | GCNGC | 6 cut(s) | 854, 946, 997, 1010, 1038, 1079 |
| BlsI | GCNGC | 6 cut(s) | 855, 947, 998, 1011, 1039, 1080 |
| BmcAI | AGTACT | 2 cut(s) | 74, 399 |
| Bme1390I | CCNGG | 4 cut(s) | 340, 455, 500, 682 |
| Bme18I | GGWCC | 1 cut(s) | 277 |
| BmgT120I | GGNCC | 1 cut(s) | 277 |
| BmiI | GGNNCC | 1 cut(s) | 814 |
| BmrFI | CCNGG | 4 cut(s) | 340, 455, 500, 682 |
| BmsI | GCATC | 4 cut(s) | 289, 565, 996, 1065 |
| BoxI | GACNNNNGTC | 1 cut(s) | 317 |
| Bpu10I | CCTNAGC | 1 cut(s) | 711 |
| BpuEI | CTTGAG | 1 cut(s) | 333 |
| BpuMI | CCSGG | 1 cut(s) | 500 |
| BsaAI | YACGTR | 1 cut(s) | 419 |
| BsaHI | GRCGYC | 2 cut(s) | 923, 1012 |
| BsaJI | CCNNGG | 1 cut(s) | 453 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 418, 448 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 15, 459, 732 |
| Bse1I | ACTGG | 2 cut(s) | 339, 832 |
| Bse3DI | GCAATG | 1 cut(s) | 48 |
| BseBI | CCWGG | 3 cut(s) | 340, 455, 682 |
| BseDI | CCNNGG | 1 cut(s) | 453 |
| BseGI | GGATG | 5 cut(s) | 543, 724, 970, 1011, 1080 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 15, 459, 732 |
| BseMI | GCAATG | 1 cut(s) | 48 |
| BseNI | ACTGG | 2 cut(s) | 339, 832 |
| BseXI | GCAGC | 4 cut(s) | 865, 957, 1008, 1049 |
| Bsh1236I | CGCG | 2 cut(s) | 936, 976 |
| Bsh1285I | CGRYCG | 1 cut(s) | 737 |
| BshFI | GGCC | 2 cut(s) | 8, 338 |
| BshNI | GGYRCC | 1 cut(s) | 812 |
| BsiEI | CGRYCG | 1 cut(s) | 737 |
| BsiSI | CCGG | 2 cut(s) | 500, 1050 |
| BslFI | GGGAC | 1 cut(s) | 943 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 15, 459, 732 |
| BsmAI | GTCTC | 3 cut(s) | 16, 289, 497 |
| BsmBI | CGTCTC | 1 cut(s) | 497 |
| BsmFI | GGGAC | 1 cut(s) | 943 |
| BsmI | GAATGC | 1 cut(s) | 138 |
| BsnI | GGCC | 2 cut(s) | 8, 338 |
| Bsp1407I | TGTACA | 1 cut(s) | 60 |
| Bsp143I | GATC | 2 cut(s) | 289, 355 |
| BspACI | CCGC | 3 cut(s) | 976, 1009, 1040 |
| BspANI | GGCC | 2 cut(s) | 8, 338 |
| BspFNI | CGCG | 2 cut(s) | 936, 976 |
| BspHI | TCATGA | 1 cut(s) | 837 |
| BspLI | GGNNCC | 1 cut(s) | 814 |
| BspMAI | CTGCAG | 1 cut(s) | 855 |
| BspPI | GGATC | 1 cut(s) | 350 |
| BspQI | GCTCTTC | 1 cut(s) | 655 |
| BspT107I | GGYRCC | 1 cut(s) | 812 |
| BsrDI | GCAATG | 1 cut(s) | 48 |
| BsrGI | TGTACA | 1 cut(s) | 60 |
| BsrI | ACTGG | 2 cut(s) | 339, 832 |
| BssECI | CCNNGG | 1 cut(s) | 453 |
| BssMI | GATC | 2 cut(s) | 289, 355 |
| BssNI | GRCGYC | 2 cut(s) | 923, 1012 |
| Bst2UI | CCWGG | 3 cut(s) | 340, 455, 682 |
| Bst4CI | ACNGT | 2 cut(s) | 735, 1070 |
| Bst6I | CTCTTC | 1 cut(s) | 655 |
| BstACI | GRCGYC | 2 cut(s) | 923, 1012 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 553 |
| BstAUI | TGTACA | 1 cut(s) | 60 |
| BstBAI | YACGTR | 1 cut(s) | 419 |
| BstC8I | GCNNGC | 4 cut(s) | 99, 148, 549, 702 |
| BstDEI | CTNAG | 3 cut(s) | 161, 655, 711 |
| BstF5I | GGATG | 5 cut(s) | 543, 724, 970, 1011, 1080 |
| BstFNI | CGCG | 2 cut(s) | 936, 976 |
| BstH2I | RGCGCY | 1 cut(s) | 371 |
| BstHHI | GCGC | 1 cut(s) | 370 |
| BstKTI | GATC | 2 cut(s) | 292, 358 |
| BstMAI | GTCTC | 3 cut(s) | 16, 289, 497 |
| BstMBI | GATC | 2 cut(s) | 289, 355 |
| BstMCI | CGRYCG | 1 cut(s) | 737 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 553, 862, 942 |
| BstNI | CCWGG | 3 cut(s) | 340, 455, 682 |
| BstNSI | RCATGY | 2 cut(s) | 101, 320 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 317 |
| BstSCI | CCNGG | 4 cut(s) | 338, 453, 498, 680 |
| BstSFI | CTRYAG | 1 cut(s) | 851 |
| BstUI | CGCG | 2 cut(s) | 936, 976 |
| BstV1I | GCAGC | 4 cut(s) | 865, 957, 1008, 1049 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 271 |
| BsuI | GTATCC | 1 cut(s) | 219 |
| BsuRI | GGCC | 2 cut(s) | 8, 338 |
| BtsCI | GGATG | 5 cut(s) | 543, 724, 970, 1011, 1080 |
| BtsIMutI | CAGTG | 1 cut(s) | 332 |
| Cac8I | GCNNGC | 4 cut(s) | 99, 148, 549, 702 |
| CciI | TCATGA | 1 cut(s) | 837 |
| CfoI | GCGC | 1 cut(s) | 370 |
| Cfr13I | GGNCC | 1 cut(s) | 277 |
| CseI | GACGC | 3 cut(s) | 122, 291, 1001 |
| CsiI | ACCWGGT | 1 cut(s) | 680 |
| Csp6I | GTAC | 7 cut(s) | 61, 73, 195, 398, 722, 813, 913 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 353, 388 |
| CviAII | CATG | 3 cut(s) | 98, 317, 838 |
| CviQI | GTAC | 7 cut(s) | 61, 73, 195, 398, 722, 813, 913 |
| DdeI | CTNAG | 3 cut(s) | 161, 655, 711 |
| DpnI | GATC | 2 cut(s) | 291, 357 |
| DpnII | GATC | 2 cut(s) | 289, 355 |
| EaeI | YGGCCR | 1 cut(s) | 6 |
| Eam1104I | CTCTTC | 1 cut(s) | 655 |
| EarI | CTCTTC | 1 cut(s) | 655 |
| Eco47I | GGWCC | 1 cut(s) | 277 |
| Eco47III | AGCGCT | 1 cut(s) | 369 |
| EcoRII | CCWGG | 3 cut(s) | 338, 453, 680 |
| Esp3I | CGTCTC | 1 cut(s) | 497 |
| FaeI | CATG | 3 cut(s) | 101, 320, 841 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 474, 506 |
| FaqI | GGGAC | 1 cut(s) | 943 |
| FatI | CATG | 3 cut(s) | 97, 316, 837 |
| Fnu4HI | GCNGC | 6 cut(s) | 854, 946, 997, 1010, 1038, 1079 |
| FokI | GGATG | 4 cut(s) | 550, 731, 977, 1018 |
| Fsp4HI | GCNGC | 6 cut(s) | 854, 946, 997, 1010, 1038, 1079 |
| FspBI | CTAG | 5 cut(s) | 309, 323, 401, 645, 705 |
| GlaI | GCGC | 1 cut(s) | 369 |
| GluI | GCNGC | 6 cut(s) | 854, 946, 997, 1010, 1038, 1079 |
| HaeII | RGCGCY | 1 cut(s) | 371 |
| HaeIII | GGCC | 2 cut(s) | 8, 338 |
| HapII | CCGG | 2 cut(s) | 500, 1050 |
| HgaI | GACGC | 3 cut(s) | 122, 291, 1001 |
| HhaI | GCGC | 1 cut(s) | 370 |
| Hin1I | GRCGYC | 2 cut(s) | 923, 1012 |
| Hin1II | CATG | 3 cut(s) | 101, 320, 841 |
| Hin6I | GCGC | 1 cut(s) | 368 |
| HinP1I | GCGC | 1 cut(s) | 368 |
| HincII | GTYRAC | 3 cut(s) | 205, 306, 904 |
| HindII | GTYRAC | 3 cut(s) | 205, 306, 904 |
| HinfI | GANTC | 1 cut(s) | 1046 |
| HpaI | GTTAAC | 1 cut(s) | 205 |
| HpaII | CCGG | 2 cut(s) | 500, 1050 |
| HphI | GGTGA | 5 cut(s) | 122, 200, 365, 497, 1033 |
| Hpy166II | GTNNAC | 5 cut(s) | 205, 253, 277, 306, 904 |
| Hpy188I | TCNGA | 3 cut(s) | 289, 754, 805 |
| Hpy188III | TCNNGA | 3 cut(s) | 385, 530, 838 |
| Hpy8I | GTNNAC | 5 cut(s) | 205, 253, 277, 306, 904 |
| Hpy99I | CGWCG | 1 cut(s) | 1017 |
| HpyAV | CCTTC | 2 cut(s) | 382, 955 |
| HpyCH4III | ACNGT | 2 cut(s) | 735, 1070 |
| HpyCH4IV | ACGT | 3 cut(s) | 418, 506, 923 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 553, 862, 942 |
| HpyF3I | CTNAG | 3 cut(s) | 161, 655, 711 |
| HpySE526I | ACGT | 3 cut(s) | 418, 506, 923 |
| Hsp92I | GRCGYC | 2 cut(s) | 923, 1012 |
| Hsp92II | CATG | 3 cut(s) | 101, 320, 841 |
| HspAI | GCGC | 1 cut(s) | 368 |
| KpnI | GGTACC | 1 cut(s) | 816 |
| KspAI | GTTAAC | 1 cut(s) | 205 |
| Kzo9I | GATC | 2 cut(s) | 289, 355 |
| LguI | GCTCTTC | 1 cut(s) | 655 |
| LmnI | GCTCC | 2 cut(s) | 121, 544 |
| Lsp1109I | GCAGC | 4 cut(s) | 865, 957, 1008, 1049 |
| LweI | GCATC | 4 cut(s) | 289, 565, 996, 1065 |
| MabI | ACCWGGT | 1 cut(s) | 680 |
| MaeI | CTAG | 5 cut(s) | 309, 323, 401, 645, 705 |
| MaeII | ACGT | 3 cut(s) | 418, 506, 923 |
| MaeIII | GTNAC | 5 cut(s) | 28, 110, 215, 937, 1064 |
| MalI | GATC | 2 cut(s) | 291, 357 |
| MboI | GATC | 2 cut(s) | 289, 355 |
| MboII | GAAGA | 4 cut(s) | 33, 622, 642, 701 |
| MlsI | TGGCCA | 1 cut(s) | 8 |
| MluCI | AATT | 3 cut(s) | 82, 242, 692 |
| MluI | ACGCGT | 1 cut(s) | 934 |
| MluNI | TGGCCA | 1 cut(s) | 8 |
| MmeI | TCCRAC | 1 cut(s) | 522 |
| MnlI | CCTC | 9 cut(s) | 270, 562, 709, 736, 817, 888, 961, 1017, 1051 |
| Mox20I | TGGCCA | 1 cut(s) | 8 |
| MroXI | GAANNNNTTC | 2 cut(s) | 582, 693 |
| MscI | TGGCCA | 1 cut(s) | 8 |
| MseI | TTAA | 4 cut(s) | 174, 204, 780, 981 |
| MslI | CAYNNNNRTG | 2 cut(s) | 272, 417 |
| Msp20I | TGGCCA | 1 cut(s) | 8 |
| MspA1I | CMGCKG | 1 cut(s) | 1040 |
| MspI | CCGG | 2 cut(s) | 500, 1050 |
| MspR9I | CCNGG | 4 cut(s) | 340, 455, 500, 682 |
| Mva1269I | GAATGC | 1 cut(s) | 138 |
| MvaI | CCWGG | 3 cut(s) | 340, 455, 682 |
| MvnI | CGCG | 2 cut(s) | 936, 976 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 553, 862, 942 |
| NciI | CCSGG | 1 cut(s) | 500 |
| NdeII | GATC | 2 cut(s) | 289, 355 |
| NlaIII | CATG | 3 cut(s) | 101, 320, 841 |
| NlaIV | GGNNCC | 1 cut(s) | 814 |
| NmuCI | GTSAC | 4 cut(s) | 110, 215, 937, 1064 |
| NspI | RCATGY | 2 cut(s) | 101, 320 |
| OliI | CACNNNNGTG | 1 cut(s) | 272 |
| PaeI | GCATGC | 1 cut(s) | 101 |
| PagI | TCATGA | 1 cut(s) | 837 |
| PciI | ACATGT | 1 cut(s) | 316 |
| PciSI | GCTCTTC | 1 cut(s) | 655 |
| PctI | GAATGC | 1 cut(s) | 138 |
| PdmI | GAANNNNTTC | 2 cut(s) | 582, 693 |
| PfeI | GAWTC | 1 cut(s) | 1046 |
| PflFI | GACNNNGTC | 1 cut(s) | 281 |
| PkrI | GCNGC | 6 cut(s) | 855, 947, 998, 1011, 1039, 1080 |
| Ppu21I | YACGTR | 1 cut(s) | 419 |
| PscI | ACATGT | 1 cut(s) | 316 |
| PshAI | GACNNNNGTC | 1 cut(s) | 317 |
| Psp6I | CCWGG | 3 cut(s) | 338, 453, 680 |
| PspGI | CCWGG | 3 cut(s) | 338, 453, 680 |
| PspN4I | GGNNCC | 1 cut(s) | 814 |
| PspPI | GGNCC | 1 cut(s) | 277 |
| PstI | CTGCAG | 1 cut(s) | 855 |
| PsyI | GACNNNGTC | 1 cut(s) | 281 |
| RsaI | GTAC | 7 cut(s) | 62, 74, 196, 399, 723, 814, 914 |
| RsaNI | GTAC | 7 cut(s) | 61, 73, 195, 398, 722, 813, 913 |
| RseI | CAYNNNNRTG | 2 cut(s) | 272, 417 |
| SapI | GCTCTTC | 1 cut(s) | 655 |
| SaqAI | TTAA | 4 cut(s) | 174, 204, 780, 981 |
| SatI | GCNGC | 6 cut(s) | 854, 946, 997, 1010, 1038, 1079 |
| Sau3AI | GATC | 2 cut(s) | 289, 355 |
| Sau96I | GGNCC | 1 cut(s) | 277 |
| ScaI | AGTACT | 2 cut(s) | 74, 399 |
| ScrFI | CCNGG | 4 cut(s) | 340, 455, 500, 682 |
| SexAI | ACCWGGT | 1 cut(s) | 680 |
| SfaNI | GCATC | 4 cut(s) | 289, 565, 996, 1065 |
| SfcI | CTRYAG | 1 cut(s) | 851 |
| SinI | GGWCC | 1 cut(s) | 277 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 272, 417 |
| SmlI | CTYRAG | 1 cut(s) | 348 |
| SmoI | CTYRAG | 1 cut(s) | 348 |
| SphI | GCATGC | 1 cut(s) | 101 |
| Sse9I | AATT | 3 cut(s) | 82, 242, 692 |
| SsiI | CCGC | 3 cut(s) | 976, 1009, 1040 |
| SspMI | CTAG | 5 cut(s) | 309, 323, 401, 645, 705 |
| StyD4I | CCNGG | 4 cut(s) | 338, 453, 498, 680 |
| TaaI | ACNGT | 2 cut(s) | 735, 1070 |
| TaiI | ACGT | 3 cut(s) | 421, 509, 926 |
| TaqI | TCGA | 1 cut(s) | 529 |
| TasI | AATT | 3 cut(s) | 82, 242, 692 |
| TatI | WGTACW | 3 cut(s) | 60, 72, 397 |
| TauI | GCSGC | 1 cut(s) | 1012 |
| TfiI | GAWTC | 1 cut(s) | 1046 |
| Tru1I | TTAA | 4 cut(s) | 174, 204, 780, 981 |
| Tru9I | TTAA | 4 cut(s) | 174, 204, 780, 981 |
| TscAI | CASTG | 1 cut(s) | 339 |
| TseFI | GTSAC | 4 cut(s) | 110, 215, 937, 1064 |
| TseI | GCWGC | 5 cut(s) | 853, 945, 996, 1037, 1078 |
| Tsp45I | GTSAC | 4 cut(s) | 110, 215, 937, 1064 |
| TspDTI | ATGAA | 3 cut(s) | 401, 658, 826 |
| TspRI | CASTG | 1 cut(s) | 339 |
| Tth111I | GACNNNGTC | 1 cut(s) | 281 |
| VpaK11BI | GGWCC | 1 cut(s) | 277 |
| XapI | RAATTY | 1 cut(s) | 692 |
| XceI | RCATGY | 2 cut(s) | 101, 320 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 126, 271, 923 |
| XmnI | GAANNNNTTC | 2 cut(s) | 582, 693 |
| XspI | CTAG | 5 cut(s) | 309, 323, 401, 645, 705 |
| ZraI | GACGTC | 1 cut(s) | 924 |
| ZrmI | AGTACT | 2 cut(s) | 74, 399 |