ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 27 - 153 | 1.2e-07 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 651 |
| AciI | CCGC | 1 cut(s) | 786 |
| AcoI | YGGCCR | 1 cut(s) | 358 |
| AcsI | RAATTY | 1 cut(s) | 597 |
| AcuI | CTGAAG | 1 cut(s) | 743 |
| AfaI | GTAC | 1 cut(s) | 450 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 119 |
| AgsI | TTSAA | 5 cut(s) | 10, 59, 325, 416, 532 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 623 |
| AjnI | CCWGG | 1 cut(s) | 78 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 850 |
| AluBI | AGCT | 8 cut(s) | 69, 282, 412, 428, 561, 574, 587, 842 |
| AluI | AGCT | 8 cut(s) | 69, 282, 412, 428, 561, 574, 587, 842 |
| AoxI | GGCC | 2 cut(s) | 110, 358 |
| ApeKI | GCWGC | 1 cut(s) | 434 |
| ApoI | RAATTY | 1 cut(s) | 597 |
| AspS9I | GGNCC | 1 cut(s) | 625 |
| AsuHPI | GGTGA | 4 cut(s) | 55, 138, 146, 568 |
| AsuII | TTCGAA | 1 cut(s) | 229 |
| AvaII | GGWCC | 1 cut(s) | 625 |
| BalI | TGGCCA | 1 cut(s) | 360 |
| BbvI | GCAGC | 1 cut(s) | 421 |
| BccI | CCATC | 2 cut(s) | 40, 776 |
| BciT130I | CCWGG | 1 cut(s) | 80 |
| BfaI | CTAG | 1 cut(s) | 117 |
| BisI | GCNGC | 1 cut(s) | 435 |
| BlsI | GCNGC | 1 cut(s) | 436 |
| Bme1390I | CCNGG | 1 cut(s) | 80 |
| Bme18I | GGWCC | 1 cut(s) | 625 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 623 |
| BmgT120I | GGNCC | 1 cut(s) | 625 |
| BmiI | GGNNCC | 2 cut(s) | 206, 627 |
| BmrFI | CCNGG | 1 cut(s) | 80 |
| BmsI | GCATC | 1 cut(s) | 132 |
| BpmI | CTGGAG | 2 cut(s) | 583, 864 |
| Bpu14I | TTCGAA | 1 cut(s) | 229 |
| BsaBI | GATNNNNATC | 1 cut(s) | 681 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 119 |
| Bse8I | GATNNNNATC | 1 cut(s) | 681 |
| BseBI | CCWGG | 1 cut(s) | 80 |
| BseGI | GGATG | 1 cut(s) | 720 |
| BseJI | GATNNNNATC | 1 cut(s) | 681 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BseXI | GCAGC | 1 cut(s) | 421 |
| BsgI | GTGCAG | 1 cut(s) | 189 |
| BshFI | GGCC | 2 cut(s) | 112, 360 |
| BslFI | GGGAC | 3 cut(s) | 611, 678, 755 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BsmFI | GGGAC | 3 cut(s) | 611, 678, 755 |
| BsmI | GAATGC | 3 cut(s) | 225, 317, 748 |
| BsnI | GGCC | 2 cut(s) | 112, 360 |
| Bsp119I | TTCGAA | 1 cut(s) | 229 |
| Bsp143I | GATC | 1 cut(s) | 676 |
| BspACI | CCGC | 1 cut(s) | 786 |
| BspANI | GGCC | 2 cut(s) | 112, 360 |
| BspLI | GGNNCC | 2 cut(s) | 206, 627 |
| BspT104I | TTCGAA | 1 cut(s) | 229 |
| BssMI | GATC | 1 cut(s) | 676 |
| Bst2UI | CCWGG | 1 cut(s) | 80 |
| Bst4CI | ACNGT | 2 cut(s) | 64, 244 |
| Bst6I | CTCTTC | 1 cut(s) | 300 |
| BstBI | TTCGAA | 1 cut(s) | 229 |
| BstC8I | GCNNGC | 2 cut(s) | 297, 362 |
| BstDEI | CTNAG | 2 cut(s) | 570, 578 |
| BstEII | GGTNACC | 1 cut(s) | 134 |
| BstF5I | GGATG | 1 cut(s) | 720 |
| BstKTI | GATC | 1 cut(s) | 679 |
| BstMBI | GATC | 1 cut(s) | 676 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 434, 829 |
| BstNI | CCWGG | 1 cut(s) | 80 |
| BstNSI | RCATGY | 1 cut(s) | 299 |
| BstPI | GGTNACC | 1 cut(s) | 134 |
| BstSCI | CCNGG | 1 cut(s) | 78 |
| BstV1I | GCAGC | 1 cut(s) | 421 |
| BsuRI | GGCC | 2 cut(s) | 112, 360 |
| BtsCI | GGATG | 1 cut(s) | 720 |
| BtsI | GCAGTG | 2 cut(s) | 218, 391 |
| BtsIMutI | CAGTG | 3 cut(s) | 218, 249, 391 |
| Cac8I | GCNNGC | 2 cut(s) | 297, 362 |
| Cfr13I | GGNCC | 1 cut(s) | 625 |
| Csp6I | GTAC | 1 cut(s) | 449 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 477, 512 |
| CviAII | CATG | 4 cut(s) | 296, 467, 494, 631 |
| CviQI | GTAC | 1 cut(s) | 449 |
| DdeI | CTNAG | 2 cut(s) | 570, 578 |
| DpnI | GATC | 1 cut(s) | 678 |
| DpnII | GATC | 1 cut(s) | 676 |
| DraI | TTTAAA | 1 cut(s) | 799 |
| DriI | GACNNNNNGTC | 1 cut(s) | 623 |
| EaeI | YGGCCR | 1 cut(s) | 358 |
| Eam1104I | CTCTTC | 1 cut(s) | 300 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 623 |
| EarI | CTCTTC | 1 cut(s) | 300 |
| EciI | GGCGGA | 1 cut(s) | 801 |
| Eco47I | GGWCC | 1 cut(s) | 625 |
| Eco57I | CTGAAG | 1 cut(s) | 743 |
| Eco91I | GGTNACC | 1 cut(s) | 134 |
| EcoO65I | GGTNACC | 1 cut(s) | 134 |
| EcoRII | CCWGG | 1 cut(s) | 78 |
| FaeI | CATG | 4 cut(s) | 299, 470, 497, 634 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 525, 557 |
| FaqI | GGGAC | 3 cut(s) | 611, 678, 755 |
| FatI | CATG | 4 cut(s) | 295, 466, 493, 630 |
| FauNDI | CATATG | 2 cut(s) | 355, 405 |
| Fnu4HI | GCNGC | 1 cut(s) | 435 |
| FokI | GGATG | 1 cut(s) | 727 |
| Fsp4HI | GCNGC | 1 cut(s) | 435 |
| FspBI | CTAG | 1 cut(s) | 117 |
| GluI | GCNGC | 1 cut(s) | 435 |
| GsuI | CTGGAG | 2 cut(s) | 583, 864 |
| HaeIII | GGCC | 2 cut(s) | 112, 360 |
| Hin1II | CATG | 4 cut(s) | 299, 470, 497, 634 |
| HinfI | GANTC | 4 cut(s) | 718, 739, 789, 865 |
| HphI | GGTGA | 4 cut(s) | 55, 138, 146, 568 |
| Hpy166II | GTNNAC | 1 cut(s) | 85 |
| Hpy188I | TCNGA | 6 cut(s) | 128, 240, 446, 723, 794, 864 |
| Hpy188III | TCNNGA | 2 cut(s) | 325, 772 |
| Hpy8I | GTNNAC | 1 cut(s) | 85 |
| HpyCH4III | ACNGT | 2 cut(s) | 64, 244 |
| HpyCH4IV | ACGT | 1 cut(s) | 256 |
| HpyCH4V | TGCA | 6 cut(s) | 23, 170, 299, 353, 376, 392 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 434, 829 |
| HpyF3I | CTNAG | 2 cut(s) | 570, 578 |
| HpySE526I | ACGT | 1 cut(s) | 256 |
| Hsp92II | CATG | 4 cut(s) | 299, 470, 497, 634 |
| Kzo9I | GATC | 1 cut(s) | 676 |
| LmnI | GCTCC | 2 cut(s) | 409, 584 |
| Lsp1109I | GCAGC | 1 cut(s) | 421 |
| LweI | GCATC | 1 cut(s) | 132 |
| MaeI | CTAG | 1 cut(s) | 117 |
| MaeII | ACGT | 1 cut(s) | 256 |
| MaeIII | GTNAC | 2 cut(s) | 134, 257 |
| MalI | GATC | 1 cut(s) | 678 |
| MboI | GATC | 1 cut(s) | 676 |
| MboII | GAAGA | 3 cut(s) | 38, 317, 736 |
| MfeI | CAATTG | 1 cut(s) | 686 |
| MlsI | TGGCCA | 1 cut(s) | 360 |
| MluCI | AATT | 8 cut(s) | 320, 348, 370, 597, 603, 643, 686, 816 |
| MluNI | TGGCCA | 1 cut(s) | 360 |
| MlyI | GAGTC | 1 cut(s) | 798 |
| MmeI | TCCRAC | 1 cut(s) | 772 |
| MnlI | CCTC | 6 cut(s) | 92, 166, 193, 301, 558, 839 |
| Mox20I | TGGCCA | 1 cut(s) | 360 |
| MscI | TGGCCA | 1 cut(s) | 360 |
| MseI | TTAA | 6 cut(s) | 218, 369, 396, 602, 798, 815 |
| MslI | CAYNNNNRTG | 2 cut(s) | 300, 635 |
| Msp20I | TGGCCA | 1 cut(s) | 360 |
| MspR9I | CCNGG | 1 cut(s) | 80 |
| MunI | CAATTG | 1 cut(s) | 686 |
| Mva1269I | GAATGC | 3 cut(s) | 225, 317, 748 |
| MvaI | CCWGG | 1 cut(s) | 80 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 434, 829 |
| NdeI | CATATG | 2 cut(s) | 355, 405 |
| NdeII | GATC | 1 cut(s) | 676 |
| NlaIII | CATG | 4 cut(s) | 299, 470, 497, 634 |
| NlaIV | GGNNCC | 2 cut(s) | 206, 627 |
| NmuCI | GTSAC | 2 cut(s) | 134, 257 |
| NspI | RCATGY | 1 cut(s) | 299 |
| NspV | TTCGAA | 1 cut(s) | 229 |
| PaeI | GCATGC | 1 cut(s) | 299 |
| PctI | GAATGC | 3 cut(s) | 225, 317, 748 |
| PfeI | GAWTC | 3 cut(s) | 718, 739, 865 |
| PkrI | GCNGC | 1 cut(s) | 436 |
| PleI | GAGTC | 1 cut(s) | 797 |
| PpsI | GAGTC | 1 cut(s) | 797 |
| PsiI | TTATAA | 1 cut(s) | 651 |
| Psp6I | CCWGG | 1 cut(s) | 78 |
| PspEI | GGTNACC | 1 cut(s) | 134 |
| PspGI | CCWGG | 1 cut(s) | 78 |
| PspN4I | GGNNCC | 2 cut(s) | 206, 627 |
| PspPI | GGNCC | 1 cut(s) | 625 |
| RsaI | GTAC | 1 cut(s) | 450 |
| RsaNI | GTAC | 1 cut(s) | 449 |
| RseI | CAYNNNNRTG | 2 cut(s) | 300, 635 |
| SaqAI | TTAA | 6 cut(s) | 218, 369, 396, 602, 798, 815 |
| SatI | GCNGC | 1 cut(s) | 435 |
| Sau3AI | GATC | 1 cut(s) | 676 |
| Sau96I | GGNCC | 1 cut(s) | 625 |
| SchI | GAGTC | 1 cut(s) | 798 |
| ScrFI | CCNGG | 1 cut(s) | 80 |
| SfaNI | GCATC | 1 cut(s) | 132 |
| SfuI | TTCGAA | 1 cut(s) | 229 |
| SinI | GGWCC | 1 cut(s) | 625 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 300, 635 |
| SphI | GCATGC | 1 cut(s) | 299 |
| Sse9I | AATT | 8 cut(s) | 320, 348, 370, 597, 603, 643, 686, 816 |
| SsiI | CCGC | 1 cut(s) | 786 |
| SspI | AATATT | 1 cut(s) | 331 |
| SspMI | CTAG | 1 cut(s) | 117 |
| StyD4I | CCNGG | 1 cut(s) | 78 |
| TaaI | ACNGT | 2 cut(s) | 64, 244 |
| TaiI | ACGT | 1 cut(s) | 259 |
| TaqI | TCGA | 2 cut(s) | 229, 273 |
| TaqII | GACCGA | 1 cut(s) | 613 |
| TasI | AATT | 8 cut(s) | 320, 348, 370, 597, 603, 643, 686, 816 |
| TatI | WGTACW | 1 cut(s) | 448 |
| TfiI | GAWTC | 3 cut(s) | 718, 739, 865 |
| Tru1I | TTAA | 6 cut(s) | 218, 369, 396, 602, 798, 815 |
| Tru9I | TTAA | 6 cut(s) | 218, 369, 396, 602, 798, 815 |
| TscAI | CASTG | 3 cut(s) | 218, 249, 391 |
| TseFI | GTSAC | 2 cut(s) | 134, 257 |
| TseI | GCWGC | 1 cut(s) | 434 |
| Tsp45I | GTSAC | 2 cut(s) | 134, 257 |
| TspDTI | ATGAA | 6 cut(s) | 63, 148, 318, 360, 656, 731 |
| TspGWI | ACGGA | 1 cut(s) | 102 |
| TspRI | CASTG | 3 cut(s) | 218, 249, 391 |
| VpaK11BI | GGWCC | 1 cut(s) | 625 |
| XapI | RAATTY | 1 cut(s) | 597 |
| XceI | RCATGY | 1 cut(s) | 299 |
| XspI | CTAG | 1 cut(s) | 117 |