Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 62, 286 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 73, 91 |
| AgsI | TTSAA | 1 cut(s) | 110 |
| AluBI | AGCT | 2 cut(s) | 260, 300 |
| AluI | AGCT | 2 cut(s) | 260, 300 |
| Alw26I | GTCTC | 1 cut(s) | 147 |
| AoxI | GGCC | 1 cut(s) | 64 |
| AspLEI | GCGC | 1 cut(s) | 177 |
| AspS9I | GGNCC | 2 cut(s) | 64, 157 |
| AsuHPI | GGTGA | 2 cut(s) | 74, 290 |
| AsuII | TTCGAA | 1 cut(s) | 102 |
| AvaII | GGWCC | 1 cut(s) | 157 |
| BbsI | GAAGAC | 1 cut(s) | 229 |
| BccI | CCATC | 2 cut(s) | 89, 121 |
| BcoDI | GTCTC | 1 cut(s) | 147 |
| Bme18I | GGWCC | 1 cut(s) | 157 |
| BmgT120I | GGNCC | 2 cut(s) | 64, 157 |
| BmsI | GCATC | 1 cut(s) | 215 |
| BpiI | GAAGAC | 1 cut(s) | 229 |
| Bpu14I | TTCGAA | 1 cut(s) | 102 |
| Bsa29I | ATCGAT | 1 cut(s) | 183 |
| BsaJI | CCNNGG | 1 cut(s) | 85 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 73, 91 |
| BseCI | ATCGAT | 1 cut(s) | 183 |
| BseDI | CCNNGG | 1 cut(s) | 85 |
| BseGI | GGATG | 1 cut(s) | 100 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 73, 91 |
| BseMII | CTCAG | 2 cut(s) | 156, 158 |
| BseRI | GAGGAG | 6 cut(s) | 59, 304, 335, 344, 347, 356 |
| BshFI | GGCC | 1 cut(s) | 66 |
| BshVI | ATCGAT | 1 cut(s) | 183 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 73, 91 |
| BsmAI | GTCTC | 1 cut(s) | 147 |
| BsnI | GGCC | 1 cut(s) | 66 |
| Bsp119I | TTCGAA | 1 cut(s) | 102 |
| Bsp143I | GATC | 2 cut(s) | 161, 293 |
| BspACI | CCGC | 2 cut(s) | 62, 286 |
| BspANI | GGCC | 1 cut(s) | 66 |
| BspCNI | CTCAG | 2 cut(s) | 157, 157 |
| BspDI | ATCGAT | 1 cut(s) | 183 |
| BspT104I | TTCGAA | 1 cut(s) | 102 |
| BssECI | CCNNGG | 1 cut(s) | 85 |
| BssMI | GATC | 2 cut(s) | 161, 293 |
| BssT1I | CCWWGG | 1 cut(s) | 85 |
| Bst6I | CTCTTC | 1 cut(s) | 333 |
| BstBI | TTCGAA | 1 cut(s) | 102 |
| BstC8I | GCNNGC | 1 cut(s) | 64 |
| BstDEI | CTNAG | 2 cut(s) | 144, 165 |
| BstF5I | GGATG | 1 cut(s) | 100 |
| BstHHI | GCGC | 1 cut(s) | 177 |
| BstKTI | GATC | 2 cut(s) | 164, 296 |
| BstMAI | GTCTC | 1 cut(s) | 147 |
| BstMBI | GATC | 2 cut(s) | 161, 293 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 59 |
| BstNSI | RCATGY | 1 cut(s) | 57 |
| BstV2I | GAAGAC | 1 cut(s) | 229 |
| Bsu15I | ATCGAT | 1 cut(s) | 183 |
| BsuRI | GGCC | 1 cut(s) | 66 |
| BsuTUI | ATCGAT | 1 cut(s) | 183 |
| BtsCI | GGATG | 1 cut(s) | 100 |
| BtsIMutI | CAGTG | 1 cut(s) | 122 |
| Cac8I | GCNNGC | 1 cut(s) | 64 |
| CfoI | GCGC | 1 cut(s) | 177 |
| Cfr13I | GGNCC | 2 cut(s) | 64, 157 |
| ClaI | ATCGAT | 1 cut(s) | 183 |
| CviAII | CATG | 4 cut(s) | 20, 54, 233, 313 |
| CviJI | RGCY | 3 cut(s) | 66, 260, 300 |
| CviKI_1 | RGCY | 3 cut(s) | 66, 260, 300 |
| DdeI | CTNAG | 2 cut(s) | 144, 165 |
| DpnI | GATC | 2 cut(s) | 163, 295 |
| DpnII | GATC | 2 cut(s) | 161, 293 |
| Eam1104I | CTCTTC | 1 cut(s) | 333 |
| EarI | CTCTTC | 1 cut(s) | 333 |
| Eco130I | CCWWGG | 1 cut(s) | 85 |
| Eco47I | GGWCC | 1 cut(s) | 157 |
| EcoT14I | CCWWGG | 1 cut(s) | 85 |
| ErhI | CCWWGG | 1 cut(s) | 85 |
| FaeI | CATG | 4 cut(s) | 23, 57, 236, 316 |
| FaiI | YATR | 7 cut(s) | 21, 39, 41, 55, 199, 234, 314 |
| FatI | CATG | 4 cut(s) | 19, 53, 232, 312 |
| FauI | CCCGC | 1 cut(s) | 55 |
| FauNDI | CATATG | 1 cut(s) | 39 |
| FokI | GGATG | 1 cut(s) | 107 |
| GlaI | GCGC | 1 cut(s) | 176 |
| HaeIII | GGCC | 1 cut(s) | 66 |
| HhaI | GCGC | 1 cut(s) | 177 |
| Hin1II | CATG | 4 cut(s) | 23, 57, 236, 316 |
| Hin6I | GCGC | 1 cut(s) | 175 |
| HinP1I | GCGC | 1 cut(s) | 175 |
| HinfI | GANTC | 3 cut(s) | 44, 79, 99 |
| HphI | GGTGA | 2 cut(s) | 74, 290 |
| Hpy188I | TCNGA | 4 cut(s) | 49, 147, 166, 225 |
| HpyCH4IV | ACGT | 1 cut(s) | 7 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 59 |
| HpyF3I | CTNAG | 2 cut(s) | 144, 165 |
| HpySE526I | ACGT | 1 cut(s) | 7 |
| Hsp92II | CATG | 4 cut(s) | 23, 57, 236, 316 |
| HspAI | GCGC | 1 cut(s) | 175 |
| Kzo9I | GATC | 2 cut(s) | 161, 293 |
| LweI | GCATC | 1 cut(s) | 215 |
| MaeII | ACGT | 1 cut(s) | 7 |
| MalI | GATC | 2 cut(s) | 163, 295 |
| MboI | GATC | 2 cut(s) | 161, 293 |
| MboII | GAAGA | 2 cut(s) | 229, 350 |
| MluCI | AATT | 1 cut(s) | 219 |
| MlyI | GAGTC | 1 cut(s) | 53 |
| MseI | TTAA | 1 cut(s) | 361 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 59 |
| NdeI | CATATG | 1 cut(s) | 39 |
| NdeII | GATC | 2 cut(s) | 161, 293 |
| NlaIII | CATG | 4 cut(s) | 23, 57, 236, 316 |
| NspI | RCATGY | 1 cut(s) | 57 |
| NspV | TTCGAA | 1 cut(s) | 102 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 324 |
| PfeI | GAWTC | 2 cut(s) | 79, 99 |
| PflFI | GACNNNGTC | 1 cut(s) | 314 |
| PleI | GAGTC | 1 cut(s) | 52 |
| PpsI | GAGTC | 1 cut(s) | 52 |
| PspPI | GGNCC | 2 cut(s) | 64, 157 |
| PsyI | GACNNNGTC | 1 cut(s) | 314 |
| SaqAI | TTAA | 1 cut(s) | 361 |
| Sau3AI | GATC | 2 cut(s) | 161, 293 |
| Sau96I | GGNCC | 2 cut(s) | 64, 157 |
| SchI | GAGTC | 1 cut(s) | 53 |
| SetI | ASST | 3 cut(s) | 10, 262, 302 |
| SfaNI | GCATC | 1 cut(s) | 215 |
| SfuI | TTCGAA | 1 cut(s) | 102 |
| SinI | GGWCC | 1 cut(s) | 157 |
| Sse9I | AATT | 1 cut(s) | 219 |
| SsiI | CCGC | 2 cut(s) | 62, 286 |
| StyI | CCWWGG | 1 cut(s) | 85 |
| TaiI | ACGT | 1 cut(s) | 10 |
| TaqI | TCGA | 4 cut(s) | 102, 183, 296, 318 |
| TaqII | GACCGA | 1 cut(s) | 174 |
| TasI | AATT | 1 cut(s) | 219 |
| TfiI | GAWTC | 2 cut(s) | 79, 99 |
| Tru1I | TTAA | 1 cut(s) | 361 |
| Tru9I | TTAA | 1 cut(s) | 361 |
| TscAI | CASTG | 1 cut(s) | 129 |
| TspDTI | ATGAA | 2 cut(s) | 26, 292 |
| TspRI | CASTG | 1 cut(s) | 129 |
| Tth111I | GACNNNGTC | 1 cut(s) | 314 |
| VpaK11BI | GGWCC | 1 cut(s) | 157 |
| XceI | RCATGY | 1 cut(s) | 57 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 92 |