Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 107 |
| AccB1I | GGYRCC | 1 cut(s) | 601 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 435, 703 |
| AccI | GTMKAC | 1 cut(s) | 99 |
| AciI | CCGC | 1 cut(s) | 983 |
| AclWI | GGATC | 4 cut(s) | 80, 136, 149, 1197 |
| AcsI | RAATTY | 5 cut(s) | 277, 520, 526, 1026, 1062 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 435, 703 |
| AflIII | ACRYGT | 2 cut(s) | 135, 457 |
| AgeI | ACCGGT | 1 cut(s) | 106 |
| AgsI | TTSAA | 5 cut(s) | 283, 526, 992, 1088, 1222 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 766 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 133, 165 |
| Alw26I | GTCTC | 4 cut(s) | 374, 400, 909, 919 |
| AlwI | GGATC | 4 cut(s) | 80, 136, 149, 1197 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 79 |
| AoxI | GGCC | 2 cut(s) | 587, 656 |
| ApeKI | GCWGC | 1 cut(s) | 963 |
| ApoI | RAATTY | 5 cut(s) | 277, 520, 526, 1026, 1062 |
| AsiGI | ACCGGT | 1 cut(s) | 106 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 679, 1083 |
| AsuHPI | GGTGA | 4 cut(s) | 456, 525, 1069, 1195 |
| AsuII | TTCGAA | 1 cut(s) | 1024 |
| AxyI | CCTNAGG | 1 cut(s) | 584 |
| BamHI | GGATCC | 1 cut(s) | 141 |
| BanI | GGYRCC | 1 cut(s) | 601 |
| BbsI | GAAGAC | 1 cut(s) | 138 |
| BbvI | GCAGC | 1 cut(s) | 975 |
| BccI | CCATC | 4 cut(s) | 613, 775, 950, 1153 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1014, 1048 |
| BciT130I | CCWGG | 1 cut(s) | 768 |
| BcoDI | GTCTC | 4 cut(s) | 374, 400, 909, 919 |
| BfaI | CTAG | 2 cut(s) | 672, 1136 |
| BisI | GCNGC | 1 cut(s) | 964 |
| BlsI | GCNGC | 1 cut(s) | 965 |
| Bme1390I | CCNGG | 1 cut(s) | 768 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 2 cut(s) | 143, 603 |
| BmrFI | CCNGG | 1 cut(s) | 768 |
| BmsI | GCATC | 1 cut(s) | 796 |
| BpiI | GAAGAC | 1 cut(s) | 138 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 714, 746, 1198, 1230 |
| Bpu14I | TTCGAA | 1 cut(s) | 1024 |
| BpuEI | CTTGAG | 6 cut(s) | 35, 75, 108, 675, 872, 1225 |
| BsaI | GGTCTC | 2 cut(s) | 400, 919 |
| BsaJI | CCNNGG | 4 cut(s) | 64, 268, 876, 885 |
| BsaWI | WCCGGW | 1 cut(s) | 106 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 661, 691 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 435, 703 |
| Bse118I | RCCGGY | 1 cut(s) | 106 |
| Bse1I | ACTGG | 1 cut(s) | 423 |
| Bse21I | CCTNAGG | 1 cut(s) | 584 |
| Bse3DI | GCAATG | 1 cut(s) | 744 |
| BseBI | CCWGG | 1 cut(s) | 768 |
| BseDI | CCNNGG | 4 cut(s) | 64, 268, 876, 885 |
| BseGI | GGATG | 5 cut(s) | 220, 601, 605, 1018, 1168 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 435, 703 |
| BseMI | GCAATG | 1 cut(s) | 744 |
| BseMII | CTCAG | 6 cut(s) | 404, 575, 699, 745, 920, 1169 |
| BseNI | ACTGG | 1 cut(s) | 423 |
| BseRI | GAGGAG | 1 cut(s) | 32 |
| BseXI | GCAGC | 1 cut(s) | 975 |
| BshFI | GGCC | 2 cut(s) | 589, 658 |
| BshNI | GGYRCC | 1 cut(s) | 601 |
| BshTI | ACCGGT | 1 cut(s) | 106 |
| BsiSI | CCGG | 1 cut(s) | 107 |
| BslFI | GGGAC | 1 cut(s) | 658 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 435, 703 |
| BsmAI | GTCTC | 4 cut(s) | 374, 400, 909, 919 |
| BsmFI | GGGAC | 1 cut(s) | 658 |
| BsmI | GAATGC | 1 cut(s) | 1175 |
| BsnI | GGCC | 2 cut(s) | 589, 658 |
| Bso31I | GGTCTC | 2 cut(s) | 400, 919 |
| Bsp119I | TTCGAA | 1 cut(s) | 1024 |
| Bsp143I | GATC | 3 cut(s) | 85, 141, 1189 |
| Bsp19I | CCATGG | 1 cut(s) | 64 |
| BspACI | CCGC | 1 cut(s) | 983 |
| BspANI | GGCC | 2 cut(s) | 589, 658 |
| BspCNI | CTCAG | 6 cut(s) | 403, 576, 700, 744, 919, 1168 |
| BspHI | TCATGA | 1 cut(s) | 232 |
| BspLI | GGNNCC | 2 cut(s) | 143, 603 |
| BspPI | GGATC | 4 cut(s) | 80, 136, 149, 1197 |
| BspT104I | TTCGAA | 1 cut(s) | 1024 |
| BspT107I | GGYRCC | 1 cut(s) | 601 |
| BspTNI | GGTCTC | 2 cut(s) | 400, 919 |
| BsrDI | GCAATG | 1 cut(s) | 744 |
| BsrFI | RCCGGY | 1 cut(s) | 106 |
| BsrI | ACTGG | 1 cut(s) | 423 |
| BssAI | RCCGGY | 1 cut(s) | 106 |
| BssECI | CCNNGG | 4 cut(s) | 64, 268, 876, 885 |
| BssMI | GATC | 3 cut(s) | 85, 141, 1189 |
| BssT1I | CCWWGG | 2 cut(s) | 64, 268 |
| Bst2UI | CCWGG | 1 cut(s) | 768 |
| Bst4CI | ACNGT | 3 cut(s) | 558, 877, 1183 |
| Bst6I | CTCTTC | 5 cut(s) | 493, 710, 715, 863, 922 |
| BstBI | TTCGAA | 1 cut(s) | 1024 |
| BstC8I | GCNNGC | 1 cut(s) | 120 |
| BstDEI | CTNAG | 7 cut(s) | 390, 584, 708, 731, 906, 1067, 1155 |
| BstDSI | CCRYGG | 3 cut(s) | 64, 876, 885 |
| BstF5I | GGATG | 5 cut(s) | 220, 601, 605, 1018, 1168 |
| BstKTI | GATC | 3 cut(s) | 88, 144, 1192 |
| BstMAI | GTCTC | 4 cut(s) | 374, 400, 909, 919 |
| BstMBI | GATC | 3 cut(s) | 85, 141, 1189 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 755 |
| BstNI | CCWGG | 1 cut(s) | 768 |
| BstNSI | RCATGY | 1 cut(s) | 461 |
| BstSCI | CCNGG | 1 cut(s) | 766 |
| BstV1I | GCAGC | 1 cut(s) | 975 |
| BstV2I | GAAGAC | 1 cut(s) | 138 |
| BstX2I | RGATCY | 3 cut(s) | 85, 141, 1189 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 641 |
| BstYI | RGATCY | 3 cut(s) | 85, 141, 1189 |
| Bsu36I | CCTNAGG | 1 cut(s) | 584 |
| BsuRI | GGCC | 2 cut(s) | 589, 658 |
| BtgI | CCRYGG | 3 cut(s) | 64, 876, 885 |
| BtgZI | GCGATG | 1 cut(s) | 957 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 5 cut(s) | 220, 601, 605, 1018, 1168 |
| BtsI | GCAGTG | 2 cut(s) | 1030, 1114 |
| BtsIMutI | CAGTG | 2 cut(s) | 1030, 1114 |
| Cac8I | GCNNGC | 1 cut(s) | 120 |
| CaiI | CAGNNNCTG | 1 cut(s) | 79 |
| CciI | TCATGA | 1 cut(s) | 232 |
| Cfr10I | RCCGGY | 1 cut(s) | 106 |
| CspAI | ACCGGT | 1 cut(s) | 106 |
| CviAII | CATG | 7 cut(s) | 65, 233, 458, 686, 939, 1177, 1228 |
| DdeI | CTNAG | 7 cut(s) | 390, 584, 708, 731, 906, 1067, 1155 |
| DpnI | GATC | 3 cut(s) | 87, 143, 1191 |
| DpnII | GATC | 3 cut(s) | 85, 141, 1189 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 107 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 107 |
| Eam1104I | CTCTTC | 5 cut(s) | 493, 710, 715, 863, 922 |
| EarI | CTCTTC | 5 cut(s) | 493, 710, 715, 863, 922 |
| Eco130I | CCWWGG | 2 cut(s) | 64, 268 |
| Eco147I | AGGCCT | 1 cut(s) | 658 |
| Eco31I | GGTCTC | 2 cut(s) | 400, 919 |
| Eco81I | CCTNAGG | 1 cut(s) | 584 |
| EcoRI | GAATTC | 2 cut(s) | 526, 1026 |
| EcoRII | CCWGG | 1 cut(s) | 766 |
| EcoT14I | CCWWGG | 2 cut(s) | 64, 268 |
| ErhI | CCWWGG | 2 cut(s) | 64, 268 |
| FaeI | CATG | 7 cut(s) | 68, 236, 461, 689, 942, 1180, 1231 |
| FaqI | GGGAC | 1 cut(s) | 658 |
| FatI | CATG | 7 cut(s) | 64, 232, 457, 685, 938, 1176, 1227 |
| FauI | CCCGC | 1 cut(s) | 990 |
| FblI | GTMKAC | 1 cut(s) | 99 |
| Fnu4HI | GCNGC | 1 cut(s) | 964 |
| FokI | GGATG | 5 cut(s) | 227, 592, 608, 1025, 1175 |
| Fsp4HI | GCNGC | 1 cut(s) | 964 |
| FspBI | CTAG | 2 cut(s) | 672, 1136 |
| GluI | GCNGC | 1 cut(s) | 964 |
| HaeIII | GGCC | 2 cut(s) | 589, 658 |
| HapII | CCGG | 1 cut(s) | 107 |
| Hin1II | CATG | 7 cut(s) | 68, 236, 461, 689, 942, 1180, 1231 |
| HindIII | AAGCTT | 3 cut(s) | 789, 1082, 1201 |
| HinfI | GANTC | 5 cut(s) | 76, 741, 881, 974, 1021 |
| HpaII | CCGG | 1 cut(s) | 107 |
| HphI | GGTGA | 4 cut(s) | 456, 525, 1069, 1195 |
| Hpy166II | GTNNAC | 3 cut(s) | 100, 243, 1131 |
| Hpy188III | TCNNGA | 6 cut(s) | 233, 424, 511, 692, 851, 1136 |
| Hpy8I | GTNNAC | 3 cut(s) | 100, 243, 1131 |
| HpyAV | CCTTC | 5 cut(s) | 230, 483, 549, 690, 1003 |
| HpyCH4III | ACNGT | 3 cut(s) | 558, 877, 1183 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 177 |
| HpyCH4V | TGCA | 4 cut(s) | 480, 622, 809, 1173 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 755 |
| HpyF3I | CTNAG | 7 cut(s) | 390, 584, 708, 731, 906, 1067, 1155 |
| HpySE526I | ACGT | 2 cut(s) | 135, 177 |
| Hsp92II | CATG | 7 cut(s) | 68, 236, 461, 689, 942, 1180, 1231 |
| Kzo9I | GATC | 3 cut(s) | 85, 141, 1189 |
| LmnI | GCTCC | 2 cut(s) | 834, 984 |
| Lsp1109I | GCAGC | 1 cut(s) | 975 |
| LweI | GCATC | 1 cut(s) | 796 |
| MaeI | CTAG | 2 cut(s) | 672, 1136 |
| MaeII | ACGT | 2 cut(s) | 135, 177 |
| MaeIII | GTNAC | 1 cut(s) | 1183 |
| MalI | GATC | 3 cut(s) | 87, 143, 1191 |
| MboI | GATC | 3 cut(s) | 85, 141, 1189 |
| MflI | RGATCY | 3 cut(s) | 85, 141, 1189 |
| MluCI | AATT | 8 cut(s) | 29, 277, 385, 520, 526, 987, 1026, 1062 |
| MroXI | GAANNNNTTC | 2 cut(s) | 679, 1083 |
| MseI | TTAA | 2 cut(s) | 356, 1101 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1181 |
| MspA1I | CMGCKG | 2 cut(s) | 435, 910 |
| MspI | CCGG | 1 cut(s) | 107 |
| MspR9I | CCNGG | 1 cut(s) | 768 |
| Mva1269I | GAATGC | 1 cut(s) | 1175 |
| MvaI | CCWGG | 1 cut(s) | 768 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 755 |
| NcoI | CCATGG | 1 cut(s) | 64 |
| NdeII | GATC | 3 cut(s) | 85, 141, 1189 |
| NlaIII | CATG | 7 cut(s) | 68, 236, 461, 689, 942, 1180, 1231 |
| NlaIV | GGNNCC | 2 cut(s) | 143, 603 |
| NmuCI | GTSAC | 1 cut(s) | 1183 |
| NspI | RCATGY | 1 cut(s) | 461 |
| NspV | TTCGAA | 1 cut(s) | 1024 |
| PagI | TCATGA | 1 cut(s) | 232 |
| PceI | AGGCCT | 1 cut(s) | 658 |
| PciI | ACATGT | 1 cut(s) | 457 |
| PctI | GAATGC | 1 cut(s) | 1175 |
| PdmI | GAANNNNTTC | 2 cut(s) | 679, 1083 |
| PfeI | GAWTC | 5 cut(s) | 76, 741, 881, 974, 1021 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 435, 703 |
| PfoI | TCCNGGA | 1 cut(s) | 766 |
| PinAI | ACCGGT | 1 cut(s) | 106 |
| PkrI | GCNGC | 1 cut(s) | 965 |
| PscI | ACATGT | 1 cut(s) | 457 |
| Psp6I | CCWGG | 1 cut(s) | 766 |
| PspGI | CCWGG | 1 cut(s) | 766 |
| PspN4I | GGNNCC | 2 cut(s) | 143, 603 |
| PstNI | CAGNNNCTG | 1 cut(s) | 79 |
| PsuI | RGATCY | 3 cut(s) | 85, 141, 1189 |
| PvuII | CAGCTG | 2 cut(s) | 435, 910 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1181 |
| SaqAI | TTAA | 2 cut(s) | 356, 1101 |
| SatI | GCNGC | 1 cut(s) | 964 |
| Sau3AI | GATC | 3 cut(s) | 85, 141, 1189 |
| ScrFI | CCNGG | 1 cut(s) | 768 |
| SfaNI | GCATC | 1 cut(s) | 796 |
| SfuI | TTCGAA | 1 cut(s) | 1024 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1181 |
| SmlI | CTYRAG | 6 cut(s) | 14, 90, 123, 690, 851, 1204 |
| SmoI | CTYRAG | 6 cut(s) | 14, 90, 123, 690, 851, 1204 |
| Sse9I | AATT | 8 cut(s) | 29, 277, 385, 520, 526, 987, 1026, 1062 |
| SseBI | AGGCCT | 1 cut(s) | 658 |
| SsiI | CCGC | 1 cut(s) | 983 |
| SspMI | CTAG | 2 cut(s) | 672, 1136 |
| StuI | AGGCCT | 1 cut(s) | 658 |
| StyD4I | CCNGG | 1 cut(s) | 766 |
| StyI | CCWWGG | 2 cut(s) | 64, 268 |
| TaaI | ACNGT | 3 cut(s) | 558, 877, 1183 |
| TaiI | ACGT | 2 cut(s) | 138, 180 |
| TaqI | TCGA | 2 cut(s) | 510, 1024 |
| TasI | AATT | 8 cut(s) | 29, 277, 385, 520, 526, 987, 1026, 1062 |
| TfiI | GAWTC | 5 cut(s) | 76, 741, 881, 974, 1021 |
| Tru1I | TTAA | 2 cut(s) | 356, 1101 |
| Tru9I | TTAA | 2 cut(s) | 356, 1101 |
| TscAI | CASTG | 2 cut(s) | 1037, 1114 |
| TseFI | GTSAC | 1 cut(s) | 1183 |
| TseI | GCWGC | 1 cut(s) | 963 |
| Tsp45I | GTSAC | 1 cut(s) | 1183 |
| TspGWI | ACGGA | 2 cut(s) | 874, 1202 |
| TspRI | CASTG | 2 cut(s) | 1037, 1114 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 435, 703 |
| XapI | RAATTY | 5 cut(s) | 277, 520, 526, 1026, 1062 |
| XbaI | TCTAGA | 1 cut(s) | 1135 |
| XceI | RCATGY | 1 cut(s) | 461 |
| XmiI | GTMKAC | 1 cut(s) | 99 |
| XmnI | GAANNNNTTC | 2 cut(s) | 679, 1083 |
| XspI | CTAG | 2 cut(s) | 672, 1136 |