Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cation_ATPase_N | PF00690 | 62 - 131 | 1.6e-11 | Cation transporter/ATPase, N-terminus |
| E1-E2_ATPase | PF00122 | 181 - 278 | 9e-18 | P-type ATPase actuator domain |
| Cation_ATPase | PF13246 | 442 - 614 | 1.8e-25 | P-type ATPase, cytoplasmic domain N |
| Hydrolase | PF00702 | 595 - 725 | 2e-10 | haloacid dehalogenase-like hydrolase |
| Cation_ATPase_C | PF00689 | 796 - 965 | 2.8e-37 | Cation transporting ATPase, C-terminus |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2234 |
| AarI | CACCTGC | 1 cut(s) | 2164 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1818 |
| Acc36I | ACCTGC | 2 cut(s) | 2164, 2937 |
| AccB1I | GGYRCC | 2 cut(s) | 628, 2633 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2868 |
| AccI | GTMKAC | 2 cut(s) | 672, 2896 |
| AciI | CCGC | 8 cut(s) | 618, 911, 1052, 1997, 2280, 2492, 2829, 2923 |
| AclI | AACGTT | 1 cut(s) | 294 |
| AclWI | GGATC | 2 cut(s) | 1324, 1823 |
| AcoI | YGGCCR | 2 cut(s) | 471, 2870 |
| AcsI | RAATTY | 8 cut(s) | 6, 50, 62, 237, 1305, 1670, 1737, 2193 |
| AcuI | CTGAAG | 1 cut(s) | 1957 |
| AfaI | GTAC | 6 cut(s) | 1210, 1225, 1370, 1572, 2561, 2628 |
| AfeI | AGCGCT | 1 cut(s) | 387 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 541, 638, 1339, 1501, 2498, 2614, 2868 |
| AgeI | ACCGGT | 1 cut(s) | 2132 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 518 |
| AhlI | ACTAGT | 1 cut(s) | 845 |
| AjiI | CACGTC | 1 cut(s) | 872 |
| AjnI | CCWGG | 5 cut(s) | 70, 1380, 1840, 1957, 2664 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 576, 608 |
| AleI | CACNNNNGTG | 1 cut(s) | 149 |
| Alw21I | GWGCWC | 2 cut(s) | 1613, 2481 |
| Alw26I | GTCTC | 1 cut(s) | 1175 |
| AlwI | GGATC | 2 cut(s) | 1324, 1823 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 587 |
| Ama87I | CYCGRG | 1 cut(s) | 2933 |
| Aor51HI | AGCGCT | 1 cut(s) | 387 |
| AoxI | GGCC | 4 cut(s) | 306, 471, 1503, 2870 |
| ApoI | RAATTY | 8 cut(s) | 6, 50, 62, 237, 1305, 1670, 1737, 2193 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2723, 2755 |
| AsiGI | ACCGGT | 1 cut(s) | 2132 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 734 |
| AspLEI | GCGC | 2 cut(s) | 388, 2144 |
| AspS9I | GGNCC | 4 cut(s) | 307, 520, 1762, 2064 |
| AsuC2I | CCSGG | 1 cut(s) | 1879 |
| AsuHPI | GGTGA | 8 cut(s) | 608, 827, 1280, 1894, 2147, 2275, 2512, 2791 |
| AsuNHI | GCTAGC | 2 cut(s) | 1700, 2440 |
| AvaI | CYCGRG | 1 cut(s) | 2933 |
| AvaII | GGWCC | 3 cut(s) | 520, 1762, 2064 |
| BaeGI | GKGCMC | 1 cut(s) | 2636 |
| BalI | TGGCCA | 1 cut(s) | 473 |
| BanI | GGYRCC | 2 cut(s) | 628, 2633 |
| BanII | GRGCYC | 1 cut(s) | 2481 |
| BbsI | GAAGAC | 1 cut(s) | 1560 |
| Bbv12I | GWGCWC | 2 cut(s) | 1613, 2481 |
| BbvCI | CCTCAGC | 1 cut(s) | 255 |
| BccI | CCATC | 7 cut(s) | 434, 632, 1135, 1450, 1787, 2132, 2874 |
| BceAI | ACGGC | 2 cut(s) | 1821, 2129 |
| BciT130I | CCWGG | 5 cut(s) | 72, 1382, 1842, 1959, 2666 |
| BciVI | GTATCC | 2 cut(s) | 1941, 2803 |
| BclI | TGATCA | 1 cut(s) | 1896 |
| BcnI | CCSGG | 1 cut(s) | 1879 |
| BcoDI | GTCTC | 1 cut(s) | 1175 |
| BcuI | ACTAGT | 1 cut(s) | 845 |
| BfaI | CTAG | 9 cut(s) | 243, 825, 846, 1377, 1601, 1614, 1701, 2145, 2441 |
| BfmI | CTRYAG | 3 cut(s) | 1587, 2361, 2771 |
| BfoI | RGCGCY | 2 cut(s) | 389, 2145 |
| BfuAI | ACCTGC | 2 cut(s) | 2164, 2937 |
| BfuI | GTATCC | 2 cut(s) | 1941, 2803 |
| BglII | AGATCT | 1 cut(s) | 1398 |
| Bme1390I | CCNGG | 6 cut(s) | 72, 1382, 1842, 1879, 1959, 2666 |
| Bme18I | GGWCC | 3 cut(s) | 520, 1762, 2064 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 518 |
| BmeT110I | CYCGRG | 1 cut(s) | 2933 |
| BmgBI | CACGTC | 1 cut(s) | 872 |
| BmgT120I | GGNCC | 4 cut(s) | 307, 520, 1762, 2064 |
| BmiI | GGNNCC | 6 cut(s) | 38, 289, 309, 630, 2540, 2635 |
| BmrFI | CCNGG | 6 cut(s) | 72, 1382, 1842, 1879, 1959, 2666 |
| BmrI | ACTGGG | 2 cut(s) | 1050, 2639 |
| BmsI | GCATC | 7 cut(s) | 7, 214, 241, 414, 1450, 1703, 2140 |
| BmtI | GCTAGC | 2 cut(s) | 1704, 2444 |
| BmuI | ACTGGG | 2 cut(s) | 1050, 2639 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2570 |
| BpiI | GAAGAC | 1 cut(s) | 1560 |
| BpmI | CTGGAG | 4 cut(s) | 23, 896, 1653, 1863 |
| Bpu10I | CCTNAGC | 1 cut(s) | 255 |
| BpuEI | CTTGAG | 2 cut(s) | 1937, 2717 |
| BpuMI | CCSGG | 1 cut(s) | 1879 |
| Bsa29I | ATCGAT | 1 cut(s) | 2241 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1752 |
| BsaJI | CCNNGG | 4 cut(s) | 1878, 2457, 2608, 2637 |
| BsaWI | WCCGGW | 1 cut(s) | 2132 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 21, 51, 612, 642, 2904, 2934 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 541, 638, 1339, 1501, 2498, 2614, 2868 |
| Bse118I | RCCGGY | 3 cut(s) | 631, 2132, 2494 |
| Bse1I | ACTGG | 5 cut(s) | 522, 1045, 1764, 2347, 2634 |
| Bse3DI | GCAATG | 3 cut(s) | 1716, 1929, 2102 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1752 |
| BseBI | CCWGG | 5 cut(s) | 72, 1382, 1842, 1959, 2666 |
| BseCI | ATCGAT | 1 cut(s) | 2241 |
| BseDI | CCNNGG | 4 cut(s) | 1878, 2457, 2608, 2637 |
| BseGI | GGATG | 4 cut(s) | 1465, 1657, 2623, 2885 |
| BseJI | GATNNNNATC | 1 cut(s) | 1752 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 541, 638, 1339, 1501, 2498, 2614, 2868 |
| BseMI | GCAATG | 3 cut(s) | 1716, 1929, 2102 |
| BseMII | CTCAG | 7 cut(s) | 246, 1154, 1170, 1416, 2238, 2318, 2559 |
| BseNI | ACTGG | 5 cut(s) | 522, 1045, 1764, 2347, 2634 |
| BseRI | GAGGAG | 2 cut(s) | 203, 1492 |
| BseSI | GKGCMC | 1 cut(s) | 2636 |
| BseYI | CCCAGC | 1 cut(s) | 310 |
| BsgI | GTGCAG | 2 cut(s) | 402, 1905 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2877 |
| BshFI | GGCC | 4 cut(s) | 308, 473, 1505, 2872 |
| BshNI | GGYRCC | 2 cut(s) | 628, 2633 |
| BshTI | ACCGGT | 1 cut(s) | 2132 |
| BshVI | ATCGAT | 1 cut(s) | 2241 |
| BsiEI | CGRYCG | 1 cut(s) | 2877 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1613, 2481 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2933 |
| BsiSI | CCGG | 4 cut(s) | 632, 1878, 2133, 2495 |
| BslFI | GGGAC | 6 cut(s) | 763, 1824, 1919, 2215, 2372, 2853 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 541, 638, 1339, 1501, 2498, 2614, 2868 |
| BsmAI | GTCTC | 1 cut(s) | 1175 |
| BsmFI | GGGAC | 6 cut(s) | 763, 1824, 1919, 2215, 2372, 2853 |
| BsnI | GGCC | 4 cut(s) | 308, 473, 1505, 2872 |
| BsoBI | CYCGRG | 1 cut(s) | 2933 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1613, 2481, 2636 |
| Bsp1407I | TGTACA | 2 cut(s) | 1368, 1570 |
| Bsp143I | GATC | 8 cut(s) | 622, 1329, 1398, 1593, 1747, 1828, 1896, 2874 |
| BspACI | CCGC | 8 cut(s) | 618, 911, 1052, 1997, 2280, 2492, 2829, 2923 |
| BspANI | GGCC | 4 cut(s) | 308, 473, 1505, 2872 |
| BspCNI | CTCAG | 7 cut(s) | 247, 1155, 1171, 1415, 2237, 2317, 2558 |
| BspDI | ATCGAT | 1 cut(s) | 2241 |
| BspLI | GGNNCC | 6 cut(s) | 38, 289, 309, 630, 2540, 2635 |
| BspMAI | CTGCAG | 2 cut(s) | 1591, 2365 |
| BspMI | ACCTGC | 2 cut(s) | 2164, 2937 |
| BspOI | GCTAGC | 2 cut(s) | 1704, 2444 |
| BspPI | GGATC | 2 cut(s) | 1324, 1823 |
| BspT107I | GGYRCC | 2 cut(s) | 628, 2633 |
| BsrDI | GCAATG | 3 cut(s) | 1716, 1929, 2102 |
| BsrFI | RCCGGY | 3 cut(s) | 631, 2132, 2494 |
| BsrGI | TGTACA | 2 cut(s) | 1368, 1570 |
| BsrI | ACTGG | 5 cut(s) | 522, 1045, 1764, 2347, 2634 |
| BssAI | RCCGGY | 3 cut(s) | 631, 2132, 2494 |
| BssECI | CCNNGG | 4 cut(s) | 1878, 2457, 2608, 2637 |
| BssMI | GATC | 8 cut(s) | 622, 1329, 1398, 1593, 1747, 1828, 1896, 2874 |
| BssNAI | GTATAC | 1 cut(s) | 2897 |
| BssT1I | CCWWGG | 3 cut(s) | 2457, 2608, 2637 |
| Bst1107I | GTATAC | 1 cut(s) | 2897 |
| Bst2UI | CCWGG | 5 cut(s) | 72, 1382, 1842, 1959, 2666 |
| Bst4CI | ACNGT | 5 cut(s) | 1117, 1159, 1249, 2398, 2758 |
| Bst6I | CTCTTC | 2 cut(s) | 88, 184 |
| BstAUI | TGTACA | 2 cut(s) | 1368, 1570 |
| BstC8I | GCNNGC | 6 cut(s) | 459, 633, 867, 1702, 2278, 2442 |
| BstDEI | CTNAG | 7 cut(s) | 255, 1163, 1179, 1402, 2224, 2304, 2545 |
| BstF5I | GGATG | 4 cut(s) | 1465, 1657, 2623, 2885 |
| BstH2I | RGCGCY | 2 cut(s) | 389, 2145 |
| BstHHI | GCGC | 2 cut(s) | 388, 2144 |
| BstKTI | GATC | 8 cut(s) | 625, 1332, 1401, 1596, 1750, 1831, 1899, 2877 |
| BstMAI | GTCTC | 1 cut(s) | 1175 |
| BstMBI | GATC | 8 cut(s) | 622, 1329, 1398, 1593, 1747, 1828, 1896, 2874 |
| BstMCI | CGRYCG | 1 cut(s) | 2877 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 834, 889, 917, 1151, 2150, 2369 |
| BstNI | CCWGG | 5 cut(s) | 72, 1382, 1842, 1959, 2666 |
| BstNSI | RCATGY | 3 cut(s) | 688, 2120, 2280 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2570 |
| BstSCI | CCNGG | 6 cut(s) | 70, 1380, 1840, 1877, 1957, 2664 |
| BstSFI | CTRYAG | 3 cut(s) | 1587, 2361, 2771 |
| BstSLI | GKGCMC | 1 cut(s) | 2636 |
| BstV2I | GAAGAC | 1 cut(s) | 1560 |
| BstX2I | RGATCY | 2 cut(s) | 1398, 1828 |
| BstYI | RGATCY | 2 cut(s) | 1398, 1828 |
| BstZ17I | GTATAC | 1 cut(s) | 2897 |
| Bsu15I | ATCGAT | 1 cut(s) | 2241 |
| BsuI | GTATCC | 2 cut(s) | 1941, 2803 |
| BsuRI | GGCC | 4 cut(s) | 308, 473, 1505, 2872 |
| BsuTUI | ATCGAT | 1 cut(s) | 2241 |
| BtgZI | GCGATG | 2 cut(s) | 261, 735 |
| BtrI | CACGTC | 1 cut(s) | 872 |
| BtsCI | GGATG | 4 cut(s) | 1465, 1657, 2623, 2885 |
| BtsI | GCAGTG | 7 cut(s) | 234, 662, 942, 1917, 1989, 2133, 2435 |
| BtsIMutI | CAGTG | 8 cut(s) | 234, 662, 942, 1917, 1981, 1989, 2133, 2435 |
| BveI | ACCTGC | 2 cut(s) | 2164, 2937 |
| Cac8I | GCNNGC | 6 cut(s) | 459, 633, 867, 1702, 2278, 2442 |
| CaiI | CAGNNNCTG | 1 cut(s) | 587 |
| CfoI | GCGC | 2 cut(s) | 388, 2144 |
| Cfr10I | RCCGGY | 3 cut(s) | 631, 2132, 2494 |
| Cfr13I | GGNCC | 4 cut(s) | 307, 520, 1762, 2064 |
| ClaI | ATCGAT | 1 cut(s) | 2241 |
| CseI | GACGC | 1 cut(s) | 2791 |
| Csp6I | GTAC | 6 cut(s) | 1209, 1224, 1369, 1571, 2560, 2627 |
| CspAI | ACCGGT | 1 cut(s) | 2132 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1053, 1088, 1510, 1545 |
| CviQI | GTAC | 6 cut(s) | 1209, 1224, 1369, 1571, 2560, 2627 |
| DdeI | CTNAG | 7 cut(s) | 255, 1163, 1179, 1402, 2224, 2304, 2545 |
| DpnI | GATC | 8 cut(s) | 624, 1331, 1400, 1595, 1749, 1830, 1898, 2876 |
| DpnII | GATC | 8 cut(s) | 622, 1329, 1398, 1593, 1747, 1828, 1896, 2874 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1818 |
| DriI | GACNNNNNGTC | 1 cut(s) | 518 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1818 |
| EaeI | YGGCCR | 2 cut(s) | 471, 2870 |
| Eam1104I | CTCTTC | 2 cut(s) | 88, 184 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 518 |
| EarI | CTCTTC | 2 cut(s) | 88, 184 |
| Ecl136II | GAGCTC | 1 cut(s) | 2479 |
| Eco130I | CCWWGG | 3 cut(s) | 2457, 2608, 2637 |
| Eco147I | AGGCCT | 1 cut(s) | 1505 |
| Eco24I | GRGCYC | 1 cut(s) | 2481 |
| Eco32I | GATATC | 1 cut(s) | 2710 |
| Eco47I | GGWCC | 3 cut(s) | 520, 1762, 2064 |
| Eco47III | AGCGCT | 1 cut(s) | 387 |
| Eco53kI | GAGCTC | 1 cut(s) | 2479 |
| Eco57I | CTGAAG | 1 cut(s) | 1957 |
| Eco88I | CYCGRG | 1 cut(s) | 2933 |
| EcoICRI | GAGCTC | 1 cut(s) | 2479 |
| EcoO109I | RGGNCCY | 2 cut(s) | 307, 2064 |
| EcoRI | GAATTC | 2 cut(s) | 237, 2193 |
| EcoRII | CCWGG | 5 cut(s) | 70, 1380, 1840, 1957, 2664 |
| EcoRV | GATATC | 1 cut(s) | 2710 |
| EcoT14I | CCWWGG | 3 cut(s) | 2457, 2608, 2637 |
| EcoT22I | ATGCAT | 1 cut(s) | 1718 |
| EcoT38I | GRGCYC | 1 cut(s) | 2481 |
| ErhI | CCWWGG | 3 cut(s) | 2457, 2608, 2637 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2592, 2624, 2696, 2728 |
| FaqI | GGGAC | 6 cut(s) | 763, 1824, 1919, 2215, 2372, 2853 |
| FauNDI | CATATG | 1 cut(s) | 1647 |
| FbaI | TGATCA | 1 cut(s) | 1896 |
| FblI | GTMKAC | 2 cut(s) | 672, 2896 |
| FokI | GGATG | 4 cut(s) | 1472, 1664, 2630, 2892 |
| FriOI | GRGCYC | 1 cut(s) | 2481 |
| FspBI | CTAG | 9 cut(s) | 243, 825, 846, 1377, 1601, 1614, 1701, 2145, 2441 |
| GlaI | GCGC | 2 cut(s) | 387, 2143 |
| GsaI | CCCAGC | 1 cut(s) | 314 |
| GsuI | CTGGAG | 4 cut(s) | 23, 896, 1653, 1863 |
| HaeII | RGCGCY | 2 cut(s) | 389, 2145 |
| HaeIII | GGCC | 4 cut(s) | 308, 473, 1505, 2872 |
| HapII | CCGG | 4 cut(s) | 632, 1878, 2133, 2495 |
| HgaI | GACGC | 1 cut(s) | 2791 |
| HhaI | GCGC | 2 cut(s) | 388, 2144 |
| Hin6I | GCGC | 2 cut(s) | 386, 2142 |
| HinP1I | GCGC | 2 cut(s) | 386, 2142 |
| HincII | GTYRAC | 1 cut(s) | 130 |
| HindII | GTYRAC | 1 cut(s) | 130 |
| HindIII | AAGCTT | 3 cut(s) | 1290, 2081, 2693 |
| HinfI | GANTC | 8 cut(s) | 104, 273, 420, 730, 1385, 1635, 1707, 1812 |
| HpaII | CCGG | 4 cut(s) | 632, 1878, 2133, 2495 |
| HphI | GGTGA | 8 cut(s) | 608, 827, 1280, 1894, 2147, 2275, 2512, 2791 |
| Hpy166II | GTNNAC | 9 cut(s) | 25, 130, 523, 673, 1369, 1885, 2041, 2723, 2897 |
| Hpy188III | TCNNGA | 8 cut(s) | 610, 690, 875, 1085, 1632, 1964, 2075, 2379 |
| Hpy8I | GTNNAC | 9 cut(s) | 25, 130, 523, 673, 1369, 1885, 2041, 2723, 2897 |
| Hpy99I | CGWCG | 1 cut(s) | 797 |
| HpyCH4III | ACNGT | 5 cut(s) | 1117, 1159, 1249, 2398, 2758 |
| HpyCH4IV | ACGT | 2 cut(s) | 294, 871 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 834, 889, 917, 1151, 2150, 2369 |
| HpyF3I | CTNAG | 7 cut(s) | 255, 1163, 1179, 1402, 2224, 2304, 2545 |
| HpySE526I | ACGT | 2 cut(s) | 294, 871 |
| HspAI | GCGC | 2 cut(s) | 386, 2142 |
| KroI | GCCGGC | 1 cut(s) | 631 |
| KroNI | GCCGGC | 1 cut(s) | 633 |
| Ksp22I | TGATCA | 1 cut(s) | 1896 |
| Kzo9I | GATC | 8 cut(s) | 622, 1329, 1398, 1593, 1747, 1828, 1896, 2874 |
| LmnI | GCTCC | 4 cut(s) | 42, 447, 1583, 1979 |
| LweI | GCATC | 7 cut(s) | 7, 214, 241, 414, 1450, 1703, 2140 |
| MaeI | CTAG | 9 cut(s) | 243, 825, 846, 1377, 1601, 1614, 1701, 2145, 2441 |
| MaeII | ACGT | 2 cut(s) | 294, 871 |
| MalI | GATC | 8 cut(s) | 624, 1331, 1400, 1595, 1749, 1830, 1898, 2876 |
| MboI | GATC | 8 cut(s) | 622, 1329, 1398, 1593, 1747, 1828, 1896, 2874 |
| MfeI | CAATTG | 2 cut(s) | 1065, 2763 |
| MflI | RGATCY | 2 cut(s) | 1398, 1828 |
| MhlI | GDGCHC | 3 cut(s) | 1613, 2481, 2636 |
| MlsI | TGGCCA | 1 cut(s) | 473 |
| MluNI | TGGCCA | 1 cut(s) | 473 |
| MlyI | GAGTC | 3 cut(s) | 1644, 1701, 1806 |
| MmeI | TCCRAC | 6 cut(s) | 315, 413, 448, 775, 1436, 2925 |
| Mox20I | TGGCCA | 1 cut(s) | 473 |
| Mph1103I | ATGCAT | 1 cut(s) | 1718 |
| MroNI | GCCGGC | 1 cut(s) | 631 |
| MroXI | GAANNNNTTC | 1 cut(s) | 734 |
| MscI | TGGCCA | 1 cut(s) | 473 |
| MseI | TTAA | 8 cut(s) | 1011, 1323, 1824, 1860, 2162, 2646, 2682, 2889 |
| MslI | CAYNNNNRTG | 5 cut(s) | 149, 479, 1650, 1892, 2756 |
| Msp20I | TGGCCA | 1 cut(s) | 473 |
| MspA1I | CMGCKG | 2 cut(s) | 175, 911 |
| MspI | CCGG | 4 cut(s) | 632, 1878, 2133, 2495 |
| MspR9I | CCNGG | 6 cut(s) | 72, 1382, 1842, 1879, 1959, 2666 |
| MunI | CAATTG | 2 cut(s) | 1065, 2763 |
| MvaI | CCWGG | 5 cut(s) | 72, 1382, 1842, 1959, 2666 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 834, 889, 917, 1151, 2150, 2369 |
| NaeI | GCCGGC | 1 cut(s) | 633 |
| NciI | CCSGG | 1 cut(s) | 1879 |
| NdeI | CATATG | 1 cut(s) | 1647 |
| NdeII | GATC | 8 cut(s) | 622, 1329, 1398, 1593, 1747, 1828, 1896, 2874 |
| NgoMIV | GCCGGC | 1 cut(s) | 631 |
| NheI | GCTAGC | 2 cut(s) | 1700, 2440 |
| NlaIV | GGNNCC | 6 cut(s) | 38, 289, 309, 630, 2540, 2635 |
| NmuCI | GTSAC | 5 cut(s) | 1249, 1268, 1449, 2128, 2779 |
| NsiI | ATGCAT | 1 cut(s) | 1718 |
| NspI | RCATGY | 3 cut(s) | 688, 2120, 2280 |
| OliI | CACNNNNGTG | 1 cut(s) | 149 |
| PaeI | GCATGC | 1 cut(s) | 2280 |
| PaeR7I | CTCGAG | 1 cut(s) | 2933 |
| PaqCI | CACCTGC | 1 cut(s) | 2164 |
| PceI | AGGCCT | 1 cut(s) | 1505 |
| PdiI | GCCGGC | 1 cut(s) | 633 |
| PdmI | GAANNNNTTC | 1 cut(s) | 734 |
| PfeI | GAWTC | 5 cut(s) | 104, 273, 420, 730, 1385 |
| PflFI | GACNNNGTC | 1 cut(s) | 2844 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2868 |
| PfoI | TCCNGGA | 1 cut(s) | 1840 |
| PinAI | ACCGGT | 1 cut(s) | 2132 |
| Ple19I | CGATCG | 1 cut(s) | 2877 |
| PleI | GAGTC | 3 cut(s) | 1643, 1701, 1806 |
| PpsI | GAGTC | 3 cut(s) | 1643, 1701, 1806 |
| PpuMI | RGGWCCY | 1 cut(s) | 2064 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2570 |
| PsiI | TTATAA | 1 cut(s) | 2234 |
| Psp124BI | GAGCTC | 1 cut(s) | 2481 |
| Psp1406I | AACGTT | 1 cut(s) | 294 |
| Psp5II | RGGWCCY | 1 cut(s) | 2064 |
| Psp6I | CCWGG | 5 cut(s) | 70, 1380, 1840, 1957, 2664 |
| PspFI | CCCAGC | 1 cut(s) | 310 |
| PspGI | CCWGG | 5 cut(s) | 70, 1380, 1840, 1957, 2664 |
| PspN4I | GGNNCC | 6 cut(s) | 38, 289, 309, 630, 2540, 2635 |
| PspPI | GGNCC | 4 cut(s) | 307, 520, 1762, 2064 |
| PspPPI | RGGWCCY | 1 cut(s) | 2064 |
| PspXI | VCTCGAGB | 1 cut(s) | 2933 |
| PstI | CTGCAG | 2 cut(s) | 1591, 2365 |
| PstNI | CAGNNNCTG | 1 cut(s) | 587 |
| PsuI | RGATCY | 2 cut(s) | 1398, 1828 |
| PsyI | GACNNNGTC | 1 cut(s) | 2844 |
| PvuI | CGATCG | 1 cut(s) | 2877 |
| PvuII | CAGCTG | 1 cut(s) | 175 |
| RsaI | GTAC | 6 cut(s) | 1210, 1225, 1370, 1572, 2561, 2628 |
| RsaNI | GTAC | 6 cut(s) | 1209, 1224, 1369, 1571, 2560, 2627 |
| RseI | CAYNNNNRTG | 5 cut(s) | 149, 479, 1650, 1892, 2756 |
| SacI | GAGCTC | 1 cut(s) | 2481 |
| SaqAI | TTAA | 8 cut(s) | 1011, 1323, 1824, 1860, 2162, 2646, 2682, 2889 |
| Sau3AI | GATC | 8 cut(s) | 622, 1329, 1398, 1593, 1747, 1828, 1896, 2874 |
| Sau96I | GGNCC | 4 cut(s) | 307, 520, 1762, 2064 |
| SchI | GAGTC | 3 cut(s) | 1644, 1701, 1806 |
| ScrFI | CCNGG | 6 cut(s) | 72, 1382, 1842, 1879, 1959, 2666 |
| SduI | GDGCHC | 3 cut(s) | 1613, 2481, 2636 |
| SfaNI | GCATC | 7 cut(s) | 7, 214, 241, 414, 1450, 1703, 2140 |
| SfcI | CTRYAG | 3 cut(s) | 1587, 2361, 2771 |
| Sfr274I | CTCGAG | 1 cut(s) | 2933 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2494 |
| SinI | GGWCC | 3 cut(s) | 520, 1762, 2064 |
| SlaI | CTCGAG | 1 cut(s) | 2933 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 149, 479, 1650, 1892, 2756 |
| SmlI | CTYRAG | 3 cut(s) | 1952, 2696, 2933 |
| SmoI | CTYRAG | 3 cut(s) | 1952, 2696, 2933 |
| SpeI | ACTAGT | 1 cut(s) | 845 |
| SphI | GCATGC | 1 cut(s) | 2280 |
| SseBI | AGGCCT | 1 cut(s) | 1505 |
| SsiI | CCGC | 8 cut(s) | 618, 911, 1052, 1997, 2280, 2492, 2829, 2923 |
| SspI | AATATT | 1 cut(s) | 2804 |
| SspMI | CTAG | 9 cut(s) | 243, 825, 846, 1377, 1601, 1614, 1701, 2145, 2441 |
| SstI | GAGCTC | 1 cut(s) | 2481 |
| StuI | AGGCCT | 1 cut(s) | 1505 |
| StyD4I | CCNGG | 6 cut(s) | 70, 1380, 1840, 1877, 1957, 2664 |
| StyI | CCWWGG | 3 cut(s) | 2457, 2608, 2637 |
| TaaI | ACNGT | 5 cut(s) | 1117, 1159, 1249, 2398, 2758 |
| TaiI | ACGT | 2 cut(s) | 297, 874 |
| TaqI | TCGA | 6 cut(s) | 114, 775, 949, 1756, 2241, 2934 |
| TatI | WGTACW | 3 cut(s) | 1208, 1368, 1570 |
| TauI | GCSGC | 2 cut(s) | 1055, 2494 |
| TfiI | GAWTC | 5 cut(s) | 104, 273, 420, 730, 1385 |
| Tru1I | TTAA | 8 cut(s) | 1011, 1323, 1824, 1860, 2162, 2646, 2682, 2889 |
| Tru9I | TTAA | 8 cut(s) | 1011, 1323, 1824, 1860, 2162, 2646, 2682, 2889 |
| TscAI | CASTG | 8 cut(s) | 234, 669, 942, 1924, 1981, 1989, 2133, 2442 |
| TseFI | GTSAC | 5 cut(s) | 1249, 1268, 1449, 2128, 2779 |
| Tsp45I | GTSAC | 5 cut(s) | 1249, 1268, 1449, 2128, 2779 |
| TspDTI | ATGAA | 8 cut(s) | 17, 815, 1145, 1250, 1287, 1556, 1674, 2364 |
| TspGWI | ACGGA | 3 cut(s) | 781, 983, 1821 |
| TspRI | CASTG | 8 cut(s) | 234, 669, 942, 1924, 1981, 1989, 2133, 2442 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2844 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2868 |
| VpaK11BI | GGWCC | 3 cut(s) | 520, 1762, 2064 |
| XapI | RAATTY | 8 cut(s) | 6, 50, 62, 237, 1305, 1670, 1737, 2193 |
| XceI | RCATGY | 3 cut(s) | 688, 2120, 2280 |
| XhoI | CTCGAG | 1 cut(s) | 2933 |
| XmiI | GTMKAC | 2 cut(s) | 672, 2896 |
| XmnI | GAANNNNTTC | 1 cut(s) | 734 |
| XspI | CTAG | 9 cut(s) | 243, 825, 846, 1377, 1601, 1614, 1701, 2145, 2441 |
| Zsp2I | ATGCAT | 1 cut(s) | 1718 |