Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 49 - 157 | 5.1e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 528 |
| AclWI | GGATC | 1 cut(s) | 32 |
| AcsI | RAATTY | 1 cut(s) | 308 |
| AcyI | GRCGYC | 1 cut(s) | 195 |
| AfaI | GTAC | 1 cut(s) | 517 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 128, 182, 528 |
| AgsI | TTSAA | 2 cut(s) | 323, 368 |
| AjnI | CCWGG | 1 cut(s) | 477 |
| AluBI | AGCT | 8 cut(s) | 68, 125, 159, 224, 251, 374, 470, 496 |
| AluI | AGCT | 8 cut(s) | 68, 125, 159, 224, 251, 374, 470, 496 |
| Alw26I | GTCTC | 1 cut(s) | 198 |
| AlwI | GGATC | 1 cut(s) | 32 |
| AoxI | GGCC | 1 cut(s) | 396 |
| ApeKI | GCWGC | 3 cut(s) | 156, 371, 427 |
| ApoI | RAATTY | 1 cut(s) | 308 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 536 |
| AspS9I | GGNCC | 1 cut(s) | 397 |
| BbsI | GAAGAC | 1 cut(s) | 89 |
| BbvCI | CCTCAGC | 1 cut(s) | 126 |
| BbvI | GCAGC | 3 cut(s) | 168, 383, 439 |
| BccI | CCATC | 2 cut(s) | 115, 146 |
| BciT130I | CCWGG | 1 cut(s) | 479 |
| BcoDI | GTCTC | 1 cut(s) | 198 |
| BfaI | CTAG | 7 cut(s) | 69, 248, 438, 467, 497, 503, 541 |
| BfmI | CTRYAG | 1 cut(s) | 219 |
| BisI | GCNGC | 3 cut(s) | 157, 372, 428 |
| BlsI | GCNGC | 3 cut(s) | 158, 373, 429 |
| Bme1390I | CCNGG | 1 cut(s) | 479 |
| BmgT120I | GGNCC | 1 cut(s) | 397 |
| BmiI | GGNNCC | 1 cut(s) | 17 |
| BmrFI | CCNGG | 1 cut(s) | 479 |
| BpiI | GAAGAC | 1 cut(s) | 89 |
| BpmI | CTGGAG | 1 cut(s) | 105 |
| Bpu10I | CCTNAGC | 1 cut(s) | 126 |
| BsaHI | GRCGYC | 1 cut(s) | 195 |
| BsaJI | CCNNGG | 2 cut(s) | 19, 178 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 128, 182, 528 |
| Bse1I | ACTGG | 3 cut(s) | 270, 295, 533 |
| BseBI | CCWGG | 1 cut(s) | 479 |
| BseDI | CCNNGG | 2 cut(s) | 19, 178 |
| BseGI | GGATG | 1 cut(s) | 157 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 128, 182, 528 |
| BseMII | CTCAG | 1 cut(s) | 117 |
| BseNI | ACTGG | 3 cut(s) | 270, 295, 533 |
| BseXI | GCAGC | 3 cut(s) | 168, 383, 439 |
| BsgI | GTGCAG | 1 cut(s) | 446 |
| BshFI | GGCC | 1 cut(s) | 398 |
| BslFI | GGGAC | 1 cut(s) | 276 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 128, 182, 528 |
| BsmAI | GTCTC | 1 cut(s) | 198 |
| BsmFI | GGGAC | 1 cut(s) | 276 |
| BsmI | GAATGC | 1 cut(s) | 171 |
| BsnI | GGCC | 1 cut(s) | 398 |
| Bsp143I | GATC | 2 cut(s) | 24, 505 |
| Bsp19I | CCATGG | 1 cut(s) | 19 |
| BspANI | GGCC | 1 cut(s) | 398 |
| BspCNI | CTCAG | 1 cut(s) | 118 |
| BspLI | GGNNCC | 1 cut(s) | 17 |
| BspPI | GGATC | 1 cut(s) | 32 |
| BsrI | ACTGG | 3 cut(s) | 270, 295, 533 |
| BssECI | CCNNGG | 2 cut(s) | 19, 178 |
| BssMI | GATC | 2 cut(s) | 24, 505 |
| BssNI | GRCGYC | 1 cut(s) | 195 |
| BssT1I | CCWWGG | 2 cut(s) | 19, 178 |
| Bst2UI | CCWGG | 1 cut(s) | 479 |
| Bst4CI | ACNGT | 1 cut(s) | 424 |
| BstACI | GRCGYC | 1 cut(s) | 195 |
| BstC8I | GCNNGC | 1 cut(s) | 432 |
| BstDEI | CTNAG | 2 cut(s) | 126, 200 |
| BstDSI | CCRYGG | 1 cut(s) | 19 |
| BstF5I | GGATG | 1 cut(s) | 157 |
| BstKTI | GATC | 2 cut(s) | 27, 508 |
| BstMAI | GTCTC | 1 cut(s) | 198 |
| BstMBI | GATC | 2 cut(s) | 24, 505 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 404, 493 |
| BstNI | CCWGG | 1 cut(s) | 479 |
| BstNSI | RCATGY | 1 cut(s) | 434 |
| BstSCI | CCNGG | 1 cut(s) | 477 |
| BstSFI | CTRYAG | 1 cut(s) | 219 |
| BstV1I | GCAGC | 3 cut(s) | 168, 383, 439 |
| BstV2I | GAAGAC | 1 cut(s) | 89 |
| BsuRI | GGCC | 1 cut(s) | 398 |
| BtgI | CCRYGG | 1 cut(s) | 19 |
| BtsCI | GGATG | 1 cut(s) | 157 |
| BtsI | GCAGTG | 1 cut(s) | 460 |
| BtsIMutI | CAGTG | 3 cut(s) | 429, 460, 526 |
| Cac8I | GCNNGC | 1 cut(s) | 432 |
| Cfr13I | GGNCC | 1 cut(s) | 397 |
| CseI | GACGC | 1 cut(s) | 184 |
| Csp6I | GTAC | 1 cut(s) | 516 |
| CviAII | CATG | 3 cut(s) | 20, 111, 431 |
| CviQI | GTAC | 1 cut(s) | 516 |
| DdeI | CTNAG | 2 cut(s) | 126, 200 |
| DpnI | GATC | 2 cut(s) | 26, 507 |
| DpnII | GATC | 2 cut(s) | 24, 505 |
| Eco130I | CCWWGG | 2 cut(s) | 19, 178 |
| EcoRII | CCWGG | 1 cut(s) | 477 |
| EcoT14I | CCWWGG | 2 cut(s) | 19, 178 |
| ErhI | CCWWGG | 2 cut(s) | 19, 178 |
| FaeI | CATG | 3 cut(s) | 23, 114, 434 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 360, 392 |
| FaqI | GGGAC | 1 cut(s) | 276 |
| FatI | CATG | 3 cut(s) | 19, 110, 430 |
| FauNDI | CATATG | 1 cut(s) | 489 |
| Fnu4HI | GCNGC | 3 cut(s) | 157, 372, 428 |
| FokI | GGATG | 1 cut(s) | 164 |
| Fsp4HI | GCNGC | 3 cut(s) | 157, 372, 428 |
| FspBI | CTAG | 7 cut(s) | 69, 248, 438, 467, 497, 503, 541 |
| GluI | GCNGC | 3 cut(s) | 157, 372, 428 |
| GsuI | CTGGAG | 1 cut(s) | 105 |
| HaeIII | GGCC | 1 cut(s) | 398 |
| HgaI | GACGC | 1 cut(s) | 184 |
| Hin1I | GRCGYC | 1 cut(s) | 195 |
| Hin1II | CATG | 3 cut(s) | 23, 114, 434 |
| HinfI | GANTC | 2 cut(s) | 5, 215 |
| Hpy188III | TCNNGA | 1 cut(s) | 320 |
| HpyCH4III | ACNGT | 1 cut(s) | 424 |
| HpyCH4V | TGCA | 3 cut(s) | 63, 230, 427 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 404, 493 |
| HpyF3I | CTNAG | 2 cut(s) | 126, 200 |
| Hsp92I | GRCGYC | 1 cut(s) | 195 |
| Hsp92II | CATG | 3 cut(s) | 23, 114, 434 |
| Kzo9I | GATC | 2 cut(s) | 24, 505 |
| LmnI | GCTCC | 1 cut(s) | 439 |
| LpnPI | CCDG | 7 cut(s) | 135, 251, 276, 456, 464, 491, 514 |
| Lsp1109I | GCAGC | 3 cut(s) | 168, 383, 439 |
| MaeI | CTAG | 7 cut(s) | 69, 248, 438, 467, 497, 503, 541 |
| MaeIII | GTNAC | 1 cut(s) | 418 |
| MalI | GATC | 2 cut(s) | 26, 507 |
| MboI | GATC | 2 cut(s) | 24, 505 |
| MboII | GAAGA | 1 cut(s) | 94 |
| MluCI | AATT | 1 cut(s) | 308 |
| MlyI | GAGTC | 1 cut(s) | 209 |
| MmeI | TCCRAC | 2 cut(s) | 116, 169 |
| MnlI | CCTC | 4 cut(s) | 121, 129, 185, 253 |
| MroXI | GAANNNNTTC | 1 cut(s) | 536 |
| MspA1I | CMGCKG | 1 cut(s) | 125 |
| MspR9I | CCNGG | 1 cut(s) | 479 |
| Mva1269I | GAATGC | 1 cut(s) | 171 |
| MvaI | CCWGG | 1 cut(s) | 479 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 404, 493 |
| NcoI | CCATGG | 1 cut(s) | 19 |
| NdeI | CATATG | 1 cut(s) | 489 |
| NdeII | GATC | 2 cut(s) | 24, 505 |
| NlaIII | CATG | 3 cut(s) | 23, 114, 434 |
| NlaIV | GGNNCC | 1 cut(s) | 17 |
| NmuCI | GTSAC | 1 cut(s) | 418 |
| NspI | RCATGY | 1 cut(s) | 434 |
| PaeI | GCATGC | 1 cut(s) | 434 |
| PctI | GAATGC | 1 cut(s) | 171 |
| PdmI | GAANNNNTTC | 1 cut(s) | 536 |
| PfeI | GAWTC | 1 cut(s) | 5 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 528 |
| PkrI | GCNGC | 3 cut(s) | 158, 373, 429 |
| PleI | GAGTC | 1 cut(s) | 209 |
| PpsI | GAGTC | 1 cut(s) | 209 |
| Psp6I | CCWGG | 1 cut(s) | 477 |
| PspGI | CCWGG | 1 cut(s) | 477 |
| PspN4I | GGNNCC | 1 cut(s) | 17 |
| PspPI | GGNCC | 1 cut(s) | 397 |
| PvuII | CAGCTG | 1 cut(s) | 125 |
| RsaI | GTAC | 1 cut(s) | 517 |
| RsaNI | GTAC | 1 cut(s) | 516 |
| SatI | GCNGC | 3 cut(s) | 157, 372, 428 |
| Sau3AI | GATC | 2 cut(s) | 24, 505 |
| Sau96I | GGNCC | 1 cut(s) | 397 |
| SchI | GAGTC | 1 cut(s) | 209 |
| ScrFI | CCNGG | 1 cut(s) | 479 |
| SfcI | CTRYAG | 1 cut(s) | 219 |
| SphI | GCATGC | 1 cut(s) | 434 |
| Sse9I | AATT | 1 cut(s) | 308 |
| SspMI | CTAG | 7 cut(s) | 69, 248, 438, 467, 497, 503, 541 |
| StyD4I | CCNGG | 1 cut(s) | 477 |
| StyI | CCWWGG | 2 cut(s) | 19, 178 |
| TaaI | ACNGT | 1 cut(s) | 424 |
| TaqI | TCGA | 2 cut(s) | 306, 391 |
| TasI | AATT | 1 cut(s) | 308 |
| TfiI | GAWTC | 1 cut(s) | 5 |
| TscAI | CASTG | 3 cut(s) | 429, 467, 533 |
| TseFI | GTSAC | 1 cut(s) | 418 |
| TseI | GCWGC | 3 cut(s) | 156, 371, 427 |
| Tsp45I | GTSAC | 1 cut(s) | 418 |
| TspDTI | ATGAA | 1 cut(s) | 506 |
| TspRI | CASTG | 3 cut(s) | 429, 467, 533 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 528 |
| XapI | RAATTY | 1 cut(s) | 308 |
| XceI | RCATGY | 1 cut(s) | 434 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 26, 185, 467 |
| XmnI | GAANNNNTTC | 1 cut(s) | 536 |
| XspI | CTAG | 7 cut(s) | 69, 248, 438, 467, 497, 503, 541 |