Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1139 |
| AccBSI | CCGCTC | 1 cut(s) | 195 |
| AciI | CCGC | 3 cut(s) | 20, 193, 1024 |
| AclWI | GGATC | 2 cut(s) | 92, 116 |
| AcoI | YGGCCR | 2 cut(s) | 783, 980 |
| AcsI | RAATTY | 2 cut(s) | 415, 1101 |
| AcuI | CTGAAG | 2 cut(s) | 629, 776 |
| AfaI | GTAC | 3 cut(s) | 72, 288, 494 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1139 |
| AgsI | TTSAA | 4 cut(s) | 156, 373, 414, 889 |
| AjnI | CCWGG | 3 cut(s) | 24, 513, 657 |
| AleI | CACNNNNGTG | 1 cut(s) | 294 |
| AluBI | AGCT | 5 cut(s) | 376, 424, 607, 790, 1060 |
| AluI | AGCT | 5 cut(s) | 376, 424, 607, 790, 1060 |
| Alw26I | GTCTC | 3 cut(s) | 510, 769, 873 |
| AlwI | GGATC | 2 cut(s) | 92, 116 |
| AoxI | GGCC | 3 cut(s) | 746, 783, 980 |
| ApeKI | GCWGC | 1 cut(s) | 432 |
| ApoI | RAATTY | 2 cut(s) | 415, 1101 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1084 |
| AspA2I | CCTAGG | 2 cut(s) | 234, 258 |
| AspS9I | GGNCC | 2 cut(s) | 22, 190 |
| AsuHPI | GGTGA | 1 cut(s) | 160 |
| AsuII | TTCGAA | 1 cut(s) | 419 |
| AvaII | GGWCC | 2 cut(s) | 22, 190 |
| AvrII | CCTAGG | 2 cut(s) | 234, 258 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 476, 509 |
| BalI | TGGCCA | 1 cut(s) | 982 |
| BbsI | GAAGAC | 1 cut(s) | 952 |
| BbvI | GCAGC | 1 cut(s) | 419 |
| BccI | CCATC | 4 cut(s) | 181, 410, 512, 988 |
| BciT130I | CCWGG | 3 cut(s) | 26, 515, 659 |
| BciVI | GTATCC | 2 cut(s) | 547, 636 |
| BcoDI | GTCTC | 3 cut(s) | 510, 769, 873 |
| BfaI | CTAG | 5 cut(s) | 7, 235, 259, 377, 872 |
| BfuI | GTATCC | 2 cut(s) | 547, 636 |
| BglII | AGATCT | 1 cut(s) | 3 |
| BisI | GCNGC | 1 cut(s) | 433 |
| BlnI | CCTAGG | 2 cut(s) | 234, 258 |
| BlsI | GCNGC | 1 cut(s) | 434 |
| Bme1390I | CCNGG | 3 cut(s) | 26, 515, 659 |
| Bme18I | GGWCC | 2 cut(s) | 22, 190 |
| BmgT120I | GGNCC | 2 cut(s) | 22, 190 |
| BmiI | GGNNCC | 1 cut(s) | 32 |
| BmrFI | CCNGG | 3 cut(s) | 26, 515, 659 |
| BmsI | GCATC | 1 cut(s) | 513 |
| BpiI | GAAGAC | 1 cut(s) | 952 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 853, 885 |
| Bpu14I | TTCGAA | 1 cut(s) | 419 |
| BpuEI | CTTGAG | 1 cut(s) | 1040 |
| BsaBI | GATNNNNATC | 1 cut(s) | 83 |
| BsaI | GGTCTC | 1 cut(s) | 873 |
| BsaJI | CCNNGG | 5 cut(s) | 25, 133, 234, 258, 915 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 490, 520 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1139 |
| Bse118I | RCCGGY | 1 cut(s) | 748 |
| Bse1I | ACTGG | 1 cut(s) | 651 |
| Bse3DI | GCAATG | 1 cut(s) | 1082 |
| Bse8I | GATNNNNATC | 1 cut(s) | 83 |
| BseBI | CCWGG | 3 cut(s) | 26, 515, 659 |
| BseDI | CCNNGG | 5 cut(s) | 25, 133, 234, 258, 915 |
| BseGI | GGATG | 4 cut(s) | 486, 523, 528, 771 |
| BseJI | GATNNNNATC | 1 cut(s) | 83 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1139 |
| BseMI | GCAATG | 1 cut(s) | 1082 |
| BseNI | ACTGG | 1 cut(s) | 651 |
| BseRI | GAGGAG | 1 cut(s) | 877 |
| BseXI | GCAGC | 1 cut(s) | 419 |
| BseYI | CCCAGC | 2 cut(s) | 451, 509 |
| Bsh1285I | CGRYCG | 1 cut(s) | 91 |
| BshFI | GGCC | 3 cut(s) | 748, 785, 982 |
| BsiEI | CGRYCG | 1 cut(s) | 91 |
| BsiSI | CCGG | 1 cut(s) | 749 |
| BsiWI | CGTACG | 1 cut(s) | 70 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1139 |
| BsmAI | GTCTC | 3 cut(s) | 510, 769, 873 |
| BsnI | GGCC | 3 cut(s) | 748, 785, 982 |
| Bso31I | GGTCTC | 1 cut(s) | 873 |
| Bsp119I | TTCGAA | 1 cut(s) | 419 |
| Bsp1407I | TGTACA | 1 cut(s) | 286 |
| Bsp143I | GATC | 5 cut(s) | 3, 84, 108, 117, 351 |
| BspACI | CCGC | 3 cut(s) | 20, 193, 1024 |
| BspANI | GGCC | 3 cut(s) | 748, 785, 982 |
| BspLI | GGNNCC | 1 cut(s) | 32 |
| BspPI | GGATC | 2 cut(s) | 92, 116 |
| BspT104I | TTCGAA | 1 cut(s) | 419 |
| BspTNI | GGTCTC | 1 cut(s) | 873 |
| BsrBI | CCGCTC | 1 cut(s) | 195 |
| BsrDI | GCAATG | 1 cut(s) | 1082 |
| BsrFI | RCCGGY | 1 cut(s) | 748 |
| BsrGI | TGTACA | 1 cut(s) | 286 |
| BsrI | ACTGG | 1 cut(s) | 651 |
| BssAI | RCCGGY | 1 cut(s) | 748 |
| BssECI | CCNNGG | 5 cut(s) | 25, 133, 234, 258, 915 |
| BssMI | GATC | 5 cut(s) | 3, 84, 108, 117, 351 |
| BssT1I | CCWWGG | 4 cut(s) | 133, 234, 258, 915 |
| Bst2UI | CCWGG | 3 cut(s) | 26, 515, 659 |
| Bst4CI | ACNGT | 1 cut(s) | 398 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 448 |
| BstAUI | TGTACA | 1 cut(s) | 286 |
| BstBI | TTCGAA | 1 cut(s) | 419 |
| BstDEI | CTNAG | 1 cut(s) | 112 |
| BstF5I | GGATG | 4 cut(s) | 486, 523, 528, 771 |
| BstKTI | GATC | 5 cut(s) | 6, 87, 111, 120, 354 |
| BstMAI | GTCTC | 3 cut(s) | 510, 769, 873 |
| BstMBI | GATC | 5 cut(s) | 3, 84, 108, 117, 351 |
| BstMCI | CGRYCG | 1 cut(s) | 91 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 448, 1066 |
| BstNI | CCWGG | 3 cut(s) | 26, 515, 659 |
| BstNSI | RCATGY | 2 cut(s) | 442, 602 |
| BstSCI | CCNGG | 3 cut(s) | 24, 513, 657 |
| BstV1I | GCAGC | 1 cut(s) | 419 |
| BstV2I | GAAGAC | 1 cut(s) | 952 |
| BstX2I | RGATCY | 2 cut(s) | 3, 108 |
| BstYI | RGATCY | 2 cut(s) | 3, 108 |
| BsuI | GTATCC | 2 cut(s) | 547, 636 |
| BsuRI | GGCC | 3 cut(s) | 748, 785, 982 |
| BtsCI | GGATG | 4 cut(s) | 486, 523, 528, 771 |
| BtsI | GCAGTG | 1 cut(s) | 287 |
| BtsIMutI | CAGTG | 1 cut(s) | 287 |
| Cfr10I | RCCGGY | 1 cut(s) | 748 |
| Cfr13I | GGNCC | 2 cut(s) | 22, 190 |
| CseI | GACGC | 1 cut(s) | 316 |
| Csp6I | GTAC | 3 cut(s) | 71, 287, 493 |
| CviAII | CATG | 4 cut(s) | 439, 470, 599, 904 |
| CviQI | GTAC | 3 cut(s) | 71, 287, 493 |
| DdeI | CTNAG | 1 cut(s) | 112 |
| DpnI | GATC | 5 cut(s) | 5, 86, 110, 119, 353 |
| DpnII | GATC | 5 cut(s) | 3, 84, 108, 117, 351 |
| EaeI | YGGCCR | 2 cut(s) | 783, 980 |
| Eco130I | CCWWGG | 4 cut(s) | 133, 234, 258, 915 |
| Eco31I | GGTCTC | 1 cut(s) | 873 |
| Eco32I | GATATC | 1 cut(s) | 1035 |
| Eco47I | GGWCC | 2 cut(s) | 22, 190 |
| Eco57I | CTGAAG | 2 cut(s) | 629, 776 |
| EcoRII | CCWGG | 3 cut(s) | 24, 513, 657 |
| EcoRV | GATATC | 1 cut(s) | 1035 |
| EcoT14I | CCWWGG | 4 cut(s) | 133, 234, 258, 915 |
| ErhI | CCWWGG | 4 cut(s) | 133, 234, 258, 915 |
| FaeI | CATG | 4 cut(s) | 442, 473, 602, 907 |
| FatI | CATG | 4 cut(s) | 438, 469, 598, 903 |
| FauI | CCCGC | 1 cut(s) | 1017 |
| FauNDI | CATATG | 1 cut(s) | 780 |
| Fnu4HI | GCNGC | 1 cut(s) | 433 |
| FokI | GGATG | 4 cut(s) | 493, 530, 535, 778 |
| Fsp4HI | GCNGC | 1 cut(s) | 433 |
| FspBI | CTAG | 5 cut(s) | 7, 235, 259, 377, 872 |
| GluI | GCNGC | 1 cut(s) | 433 |
| GsaI | CCCAGC | 2 cut(s) | 455, 513 |
| HaeIII | GGCC | 3 cut(s) | 748, 785, 982 |
| HapII | CCGG | 1 cut(s) | 749 |
| HgaI | GACGC | 1 cut(s) | 316 |
| Hin1II | CATG | 4 cut(s) | 442, 473, 602, 907 |
| HindIII | AAGCTT | 2 cut(s) | 422, 1058 |
| HinfI | GANTC | 7 cut(s) | 124, 162, 207, 346, 662, 759, 1041 |
| HpaII | CCGG | 1 cut(s) | 749 |
| HphI | GGTGA | 1 cut(s) | 160 |
| Hpy166II | GTNNAC | 2 cut(s) | 287, 289 |
| Hpy188I | TCNGA | 4 cut(s) | 167, 212, 351, 849 |
| Hpy188III | TCNNGA | 5 cut(s) | 121, 204, 226, 763, 1038 |
| Hpy8I | GTNNAC | 2 cut(s) | 287, 289 |
| HpyAV | CCTTC | 4 cut(s) | 44, 302, 604, 1023 |
| HpyCH4III | ACNGT | 1 cut(s) | 398 |
| HpyCH4IV | ACGT | 1 cut(s) | 356 |
| HpyCH4V | TGCA | 7 cut(s) | 319, 435, 442, 602, 630, 709, 1075 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 448, 1066 |
| HpyF3I | CTNAG | 1 cut(s) | 112 |
| HpySE526I | ACGT | 1 cut(s) | 356 |
| Hsp92II | CATG | 4 cut(s) | 442, 473, 602, 907 |
| Kzo9I | GATC | 5 cut(s) | 3, 84, 108, 117, 351 |
| LmnI | GCTCC | 1 cut(s) | 687 |
| Lsp1109I | GCAGC | 1 cut(s) | 419 |
| LweI | GCATC | 1 cut(s) | 513 |
| MaeI | CTAG | 5 cut(s) | 7, 235, 259, 377, 872 |
| MaeII | ACGT | 1 cut(s) | 356 |
| MaeIII | GTNAC | 5 cut(s) | 343, 483, 623, 673, 899 |
| MalI | GATC | 5 cut(s) | 5, 86, 110, 119, 353 |
| MbiI | CCGCTC | 1 cut(s) | 195 |
| MboI | GATC | 5 cut(s) | 3, 84, 108, 117, 351 |
| MboII | GAAGA | 6 cut(s) | 192, 325, 864, 957, 999, 1020 |
| MfeI | CAATTG | 2 cut(s) | 558, 1090 |
| MflI | RGATCY | 2 cut(s) | 3, 108 |
| MlsI | TGGCCA | 1 cut(s) | 982 |
| MluCI | AATT | 5 cut(s) | 415, 558, 807, 1090, 1101 |
| MluNI | TGGCCA | 1 cut(s) | 982 |
| MlyI | GAGTC | 3 cut(s) | 118, 216, 340 |
| MnlI | CCTC | 9 cut(s) | 211, 347, 459, 559, 696, 738, 855, 858, 1104 |
| Mox20I | TGGCCA | 1 cut(s) | 982 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1084 |
| MscI | TGGCCA | 1 cut(s) | 982 |
| MseI | TTAA | 4 cut(s) | 692, 806, 877, 1015 |
| MslI | CAYNNNNRTG | 1 cut(s) | 294 |
| Msp20I | TGGCCA | 1 cut(s) | 982 |
| MspI | CCGG | 1 cut(s) | 749 |
| MspR9I | CCNGG | 3 cut(s) | 26, 515, 659 |
| MunI | CAATTG | 2 cut(s) | 558, 1090 |
| MvaI | CCWGG | 3 cut(s) | 26, 515, 659 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 448, 1066 |
| NdeI | CATATG | 1 cut(s) | 780 |
| NdeII | GATC | 5 cut(s) | 3, 84, 108, 117, 351 |
| NlaIII | CATG | 4 cut(s) | 442, 473, 602, 907 |
| NlaIV | GGNNCC | 1 cut(s) | 32 |
| NmeAIII | GCCGAG | 1 cut(s) | 811 |
| NmuCI | GTSAC | 3 cut(s) | 343, 673, 899 |
| NspI | RCATGY | 2 cut(s) | 442, 602 |
| NspV | TTCGAA | 1 cut(s) | 419 |
| OliI | CACNNNNGTG | 1 cut(s) | 294 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1084 |
| PfeI | GAWTC | 4 cut(s) | 162, 662, 759, 1041 |
| Pfl23II | CGTACG | 1 cut(s) | 70 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1139 |
| PkrI | GCNGC | 1 cut(s) | 434 |
| PleI | GAGTC | 3 cut(s) | 118, 215, 340 |
| PpsI | GAGTC | 3 cut(s) | 118, 215, 340 |
| Psp6I | CCWGG | 3 cut(s) | 24, 513, 657 |
| PspFI | CCCAGC | 2 cut(s) | 451, 509 |
| PspGI | CCWGG | 3 cut(s) | 24, 513, 657 |
| PspLI | CGTACG | 1 cut(s) | 70 |
| PspN4I | GGNNCC | 1 cut(s) | 32 |
| PspPI | GGNCC | 2 cut(s) | 22, 190 |
| PsuI | RGATCY | 2 cut(s) | 3, 108 |
| RsaI | GTAC | 3 cut(s) | 72, 288, 494 |
| RsaNI | GTAC | 3 cut(s) | 71, 287, 493 |
| RseI | CAYNNNNRTG | 1 cut(s) | 294 |
| SaqAI | TTAA | 4 cut(s) | 692, 806, 877, 1015 |
| SatI | GCNGC | 1 cut(s) | 433 |
| Sau3AI | GATC | 5 cut(s) | 3, 84, 108, 117, 351 |
| Sau96I | GGNCC | 2 cut(s) | 22, 190 |
| SchI | GAGTC | 3 cut(s) | 118, 216, 340 |
| ScrFI | CCNGG | 3 cut(s) | 26, 515, 659 |
| SfaNI | GCATC | 1 cut(s) | 513 |
| SfuI | TTCGAA | 1 cut(s) | 419 |
| SinI | GGWCC | 2 cut(s) | 22, 190 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 294 |
| SmlI | CTYRAG | 1 cut(s) | 1055 |
| SmoI | CTYRAG | 1 cut(s) | 1055 |
| Sse9I | AATT | 5 cut(s) | 415, 558, 807, 1090, 1101 |
| SsiI | CCGC | 3 cut(s) | 20, 193, 1024 |
| SspI | AATATT | 1 cut(s) | 545 |
| SspMI | CTAG | 5 cut(s) | 7, 235, 259, 377, 872 |
| StyD4I | CCNGG | 3 cut(s) | 24, 513, 657 |
| StyI | CCWWGG | 4 cut(s) | 133, 234, 258, 915 |
| TaaI | ACNGT | 1 cut(s) | 398 |
| TaiI | ACGT | 1 cut(s) | 359 |
| TaqI | TCGA | 3 cut(s) | 203, 419, 1044 |
| TaqII | GACCGA | 1 cut(s) | 77 |
| TasI | AATT | 5 cut(s) | 415, 558, 807, 1090, 1101 |
| TatI | WGTACW | 1 cut(s) | 286 |
| TfiI | GAWTC | 4 cut(s) | 162, 662, 759, 1041 |
| Tru1I | TTAA | 4 cut(s) | 692, 806, 877, 1015 |
| Tru9I | TTAA | 4 cut(s) | 692, 806, 877, 1015 |
| TscAI | CASTG | 1 cut(s) | 287 |
| TseFI | GTSAC | 3 cut(s) | 343, 673, 899 |
| TseI | GCWGC | 1 cut(s) | 432 |
| Tsp45I | GTSAC | 3 cut(s) | 343, 673, 899 |
| TspDTI | ATGAA | 1 cut(s) | 1093 |
| TspGWI | ACGGA | 1 cut(s) | 493 |
| TspRI | CASTG | 1 cut(s) | 287 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1139 |
| VpaK11BI | GGWCC | 2 cut(s) | 22, 190 |
| XapI | RAATTY | 2 cut(s) | 415, 1101 |
| XceI | RCATGY | 2 cut(s) | 442, 602 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 738 |
| XmaJI | CCTAGG | 2 cut(s) | 234, 258 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1084 |
| XspI | CTAG | 5 cut(s) | 7, 235, 259, 377, 872 |