ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 568 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 832 |
| AciI | CCGC | 1 cut(s) | 686 |
| AcoI | YGGCCR | 1 cut(s) | 744 |
| AfaI | GTAC | 3 cut(s) | 711, 873, 964 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 282, 337, 358, 499, 832 |
| AjnI | CCWGG | 2 cut(s) | 825, 955 |
| Alw21I | GWGCWC | 1 cut(s) | 118 |
| AoxI | GGCC | 3 cut(s) | 233, 248, 744 |
| ApeKI | GCWGC | 2 cut(s) | 952, 998 |
| AspA2I | CCTAGG | 1 cut(s) | 230 |
| AspS9I | GGNCC | 3 cut(s) | 249, 487, 836 |
| AsuC2I | CCSGG | 1 cut(s) | 914 |
| AvaII | GGWCC | 2 cut(s) | 487, 836 |
| AvrII | CCTAGG | 1 cut(s) | 230 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 962, 995 |
| BalI | TGGCCA | 1 cut(s) | 746 |
| BanI | GGYRCC | 1 cut(s) | 568 |
| BanII | GRGCYC | 2 cut(s) | 118, 272 |
| Bbv12I | GWGCWC | 1 cut(s) | 118 |
| BbvI | GCAGC | 2 cut(s) | 939, 985 |
| BccI | CCATC | 2 cut(s) | 171, 736 |
| BciT130I | CCWGG | 2 cut(s) | 827, 957 |
| BcnI | CCSGG | 1 cut(s) | 914 |
| BglII | AGATCT | 1 cut(s) | 626 |
| BisI | GCNGC | 2 cut(s) | 953, 999 |
| BlnI | CCTAGG | 1 cut(s) | 230 |
| BlsI | GCNGC | 2 cut(s) | 954, 1000 |
| BmcAI | AGTACT | 1 cut(s) | 964 |
| Bme1390I | CCNGG | 3 cut(s) | 827, 914, 957 |
| Bme18I | GGWCC | 2 cut(s) | 487, 836 |
| BmgT120I | GGNCC | 3 cut(s) | 249, 487, 836 |
| BmiI | GGNNCC | 3 cut(s) | 269, 570, 837 |
| BmrFI | CCNGG | 3 cut(s) | 827, 914, 957 |
| BmrI | ACTGGG | 1 cut(s) | 488 |
| BmsI | GCATC | 2 cut(s) | 216, 706 |
| BmuI | ACTGGG | 1 cut(s) | 488 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 155, 187 |
| BpuEI | CTTGAG | 3 cut(s) | 157, 425, 762 |
| BpuMI | CCSGG | 1 cut(s) | 914 |
| BsaAI | YACGTR | 1 cut(s) | 713 |
| BsaJI | CCNNGG | 2 cut(s) | 230, 826 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 206, 236 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 282, 337, 358, 499, 832 |
| Bse1I | ACTGG | 2 cut(s) | 494, 839 |
| BseBI | CCWGG | 2 cut(s) | 827, 957 |
| BseDI | CCNNGG | 2 cut(s) | 230, 826 |
| BseGI | GGATG | 4 cut(s) | 231, 367, 747, 934 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 282, 337, 358, 499, 832 |
| BseMII | CTCAG | 1 cut(s) | 962 |
| BseNI | ACTGG | 2 cut(s) | 494, 839 |
| BseRI | GAGGAG | 2 cut(s) | 505, 510 |
| BseXI | GCAGC | 2 cut(s) | 939, 985 |
| BshFI | GGCC | 3 cut(s) | 235, 250, 746 |
| BshNI | GGYRCC | 1 cut(s) | 568 |
| BsiHKAI | GWGCWC | 1 cut(s) | 118 |
| BsiSI | CCGG | 1 cut(s) | 913 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 282, 337, 358, 499, 832 |
| BsmI | GAATGC | 1 cut(s) | 883 |
| BsnI | GGCC | 3 cut(s) | 235, 250, 746 |
| Bsp1286I | GDGCHC | 2 cut(s) | 118, 272 |
| Bsp143I | GATC | 1 cut(s) | 626 |
| BspACI | CCGC | 1 cut(s) | 686 |
| BspANI | GGCC | 3 cut(s) | 235, 250, 746 |
| BspCNI | CTCAG | 1 cut(s) | 961 |
| BspLI | GGNNCC | 3 cut(s) | 269, 570, 837 |
| BspT107I | GGYRCC | 1 cut(s) | 568 |
| BsrI | ACTGG | 2 cut(s) | 494, 839 |
| BssECI | CCNNGG | 2 cut(s) | 230, 826 |
| BssMI | GATC | 1 cut(s) | 626 |
| BssT1I | CCWWGG | 1 cut(s) | 230 |
| Bst2UI | CCWGG | 2 cut(s) | 827, 957 |
| Bst4CI | ACNGT | 2 cut(s) | 72, 1031 |
| BstBAI | YACGTR | 1 cut(s) | 713 |
| BstC8I | GCNNGC | 2 cut(s) | 808, 812 |
| BstDEI | CTNAG | 2 cut(s) | 263, 948 |
| BstF5I | GGATG | 4 cut(s) | 231, 367, 747, 934 |
| BstKTI | GATC | 1 cut(s) | 629 |
| BstMBI | GATC | 1 cut(s) | 626 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 14, 203, 1019 |
| BstNI | CCWGG | 2 cut(s) | 827, 957 |
| BstSCI | CCNGG | 3 cut(s) | 825, 912, 955 |
| BstV1I | GCAGC | 2 cut(s) | 939, 985 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| BsuRI | GGCC | 3 cut(s) | 235, 250, 746 |
| BtsCI | GGATG | 4 cut(s) | 231, 367, 747, 934 |
| BtsIMutI | CAGTG | 1 cut(s) | 456 |
| Cac8I | GCNNGC | 2 cut(s) | 808, 812 |
| Cfr13I | GGNCC | 3 cut(s) | 249, 487, 836 |
| Csp6I | GTAC | 3 cut(s) | 710, 872, 963 |
| CviAII | CATG | 2 cut(s) | 239, 499 |
| CviQI | GTAC | 3 cut(s) | 710, 872, 963 |
| DdeI | CTNAG | 2 cut(s) | 263, 948 |
| DpnI | GATC | 1 cut(s) | 628 |
| DpnII | GATC | 1 cut(s) | 626 |
| EaeI | YGGCCR | 1 cut(s) | 744 |
| Ecl136II | GAGCTC | 1 cut(s) | 116 |
| Eco130I | CCWWGG | 1 cut(s) | 230 |
| Eco147I | AGGCCT | 1 cut(s) | 235 |
| Eco24I | GRGCYC | 2 cut(s) | 118, 272 |
| Eco47I | GGWCC | 2 cut(s) | 487, 836 |
| Eco53kI | GAGCTC | 1 cut(s) | 116 |
| EcoICRI | GAGCTC | 1 cut(s) | 116 |
| EcoRII | CCWGG | 2 cut(s) | 825, 955 |
| EcoT14I | CCWWGG | 1 cut(s) | 230 |
| EcoT22I | ATGCAT | 1 cut(s) | 885 |
| EcoT38I | GRGCYC | 2 cut(s) | 118, 272 |
| ErhI | CCWWGG | 1 cut(s) | 230 |
| FaeI | CATG | 2 cut(s) | 242, 502 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 570, 602, 645, 677 |
| FatI | CATG | 2 cut(s) | 238, 498 |
| Fnu4HI | GCNGC | 2 cut(s) | 953, 999 |
| FokI | GGATG | 4 cut(s) | 238, 374, 754, 941 |
| FriOI | GRGCYC | 2 cut(s) | 118, 272 |
| Fsp4HI | GCNGC | 2 cut(s) | 953, 999 |
| GluI | GCNGC | 2 cut(s) | 953, 999 |
| HaeIII | GGCC | 3 cut(s) | 235, 250, 746 |
| HapII | CCGG | 1 cut(s) | 913 |
| Hin1II | CATG | 2 cut(s) | 242, 502 |
| HindIII | AAGCTT | 1 cut(s) | 15 |
| HinfI | GANTC | 4 cut(s) | 135, 851, 857, 896 |
| HpaII | CCGG | 1 cut(s) | 913 |
| Hpy166II | GTNNAC | 1 cut(s) | 874 |
| Hpy188I | TCNGA | 1 cut(s) | 856 |
| Hpy188III | TCNNGA | 7 cut(s) | 174, 396, 404, 608, 821, 848, 983 |
| Hpy8I | GTNNAC | 1 cut(s) | 874 |
| HpyAV | CCTTC | 4 cut(s) | 48, 129, 640, 980 |
| HpyCH4III | ACNGT | 2 cut(s) | 72, 1031 |
| HpyCH4IV | ACGT | 1 cut(s) | 712 |
| HpyCH4V | TGCA | 3 cut(s) | 719, 810, 883 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 14, 203, 1019 |
| HpyF3I | CTNAG | 2 cut(s) | 263, 948 |
| HpySE526I | ACGT | 1 cut(s) | 712 |
| Hsp92II | CATG | 2 cut(s) | 242, 502 |
| Kzo9I | GATC | 1 cut(s) | 626 |
| LmnI | GCTCC | 6 cut(s) | 113, 121, 267, 518, 658, 915 |
| Lsp1109I | GCAGC | 2 cut(s) | 939, 985 |
| LweI | GCATC | 2 cut(s) | 216, 706 |
| MaeII | ACGT | 1 cut(s) | 712 |
| MaeIII | GTNAC | 1 cut(s) | 502 |
| MalI | GATC | 1 cut(s) | 628 |
| MboI | GATC | 1 cut(s) | 626 |
| MboII | GAAGA | 3 cut(s) | 559, 655, 701 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 2 cut(s) | 118, 272 |
| MlsI | TGGCCA | 1 cut(s) | 746 |
| MluCI | AATT | 2 cut(s) | 24, 702 |
| MluNI | TGGCCA | 1 cut(s) | 746 |
| MlyI | GAGTC | 1 cut(s) | 851 |
| MmeI | TCCRAC | 2 cut(s) | 166, 302 |
| Mox20I | TGGCCA | 1 cut(s) | 746 |
| Mph1103I | ATGCAT | 1 cut(s) | 885 |
| MscI | TGGCCA | 1 cut(s) | 746 |
| MseI | TTAA | 1 cut(s) | 639 |
| Msp20I | TGGCCA | 1 cut(s) | 746 |
| MspA1I | CMGCKG | 1 cut(s) | 952 |
| MspI | CCGG | 1 cut(s) | 913 |
| MspR9I | CCNGG | 3 cut(s) | 827, 914, 957 |
| Mva1269I | GAATGC | 1 cut(s) | 883 |
| MvaI | CCWGG | 2 cut(s) | 827, 957 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 14, 203, 1019 |
| NciI | CCSGG | 1 cut(s) | 914 |
| NdeII | GATC | 1 cut(s) | 626 |
| NlaIII | CATG | 2 cut(s) | 242, 502 |
| NlaIV | GGNNCC | 3 cut(s) | 269, 570, 837 |
| NsiI | ATGCAT | 1 cut(s) | 885 |
| PceI | AGGCCT | 1 cut(s) | 235 |
| PctI | GAATGC | 1 cut(s) | 883 |
| PfeI | GAWTC | 3 cut(s) | 135, 851, 896 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 832 |
| PkrI | GCNGC | 2 cut(s) | 954, 1000 |
| PleI | GAGTC | 1 cut(s) | 851 |
| PpsI | GAGTC | 1 cut(s) | 851 |
| Ppu21I | YACGTR | 1 cut(s) | 713 |
| Psp124BI | GAGCTC | 1 cut(s) | 118 |
| Psp6I | CCWGG | 2 cut(s) | 825, 955 |
| PspGI | CCWGG | 2 cut(s) | 825, 955 |
| PspN4I | GGNNCC | 3 cut(s) | 269, 570, 837 |
| PspPI | GGNCC | 3 cut(s) | 249, 487, 836 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| PvuII | CAGCTG | 1 cut(s) | 952 |
| RsaI | GTAC | 3 cut(s) | 711, 873, 964 |
| RsaNI | GTAC | 3 cut(s) | 710, 872, 963 |
| SacI | GAGCTC | 1 cut(s) | 118 |
| SaqAI | TTAA | 1 cut(s) | 639 |
| SatI | GCNGC | 2 cut(s) | 953, 999 |
| Sau3AI | GATC | 1 cut(s) | 626 |
| Sau96I | GGNCC | 3 cut(s) | 249, 487, 836 |
| ScaI | AGTACT | 1 cut(s) | 964 |
| SchI | GAGTC | 1 cut(s) | 851 |
| ScrFI | CCNGG | 3 cut(s) | 827, 914, 957 |
| SduI | GDGCHC | 2 cut(s) | 118, 272 |
| SfaNI | GCATC | 2 cut(s) | 216, 706 |
| SinI | GGWCC | 2 cut(s) | 487, 836 |
| SmlI | CTYRAG | 3 cut(s) | 172, 404, 777 |
| SmoI | CTYRAG | 3 cut(s) | 172, 404, 777 |
| Sse9I | AATT | 2 cut(s) | 24, 702 |
| SseBI | AGGCCT | 1 cut(s) | 235 |
| SsiI | CCGC | 1 cut(s) | 686 |
| SstI | GAGCTC | 1 cut(s) | 118 |
| StuI | AGGCCT | 1 cut(s) | 235 |
| StyD4I | CCNGG | 3 cut(s) | 825, 912, 955 |
| StyI | CCWWGG | 1 cut(s) | 230 |
| TaaI | ACNGT | 2 cut(s) | 72, 1031 |
| TaiI | ACGT | 1 cut(s) | 715 |
| TaqI | TCGA | 1 cut(s) | 700 |
| TasI | AATT | 2 cut(s) | 24, 702 |
| TatI | WGTACW | 2 cut(s) | 871, 962 |
| TfiI | GAWTC | 3 cut(s) | 135, 851, 896 |
| Tru1I | TTAA | 1 cut(s) | 639 |
| Tru9I | TTAA | 1 cut(s) | 639 |
| TscAI | CASTG | 1 cut(s) | 456 |
| TseI | GCWGC | 2 cut(s) | 952, 998 |
| TspDTI | ATGAA | 2 cut(s) | 68, 281 |
| TspRI | CASTG | 1 cut(s) | 456 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 832 |
| VpaK11BI | GGWCC | 2 cut(s) | 487, 836 |
| XbaI | TCTAGA | 2 cut(s) | 395, 847 |
| XmaJI | CCTAGG | 1 cut(s) | 230 |
| ZrmI | AGTACT | 1 cut(s) | 964 |
| Zsp2I | ATGCAT | 1 cut(s) | 885 |