Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 797 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 285 |
| AccI | GTMKAC | 2 cut(s) | 135, 650 |
| AccII | CGCG | 2 cut(s) | 356, 452 |
| AciI | CCGC | 5 cut(s) | 164, 356, 438, 450, 746 |
| AclWI | GGATC | 1 cut(s) | 409 |
| AcoI | YGGCCR | 1 cut(s) | 447 |
| AcsI | RAATTY | 1 cut(s) | 777 |
| AcyI | GRCGYC | 1 cut(s) | 798 |
| AfaI | GTAC | 1 cut(s) | 397 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 192, 285, 355, 577, 660 |
| AflII | CTTAAG | 1 cut(s) | 472 |
| AgeI | ACCGGT | 1 cut(s) | 653 |
| AgsI | TTSAA | 1 cut(s) | 127 |
| AluBI | AGCT | 3 cut(s) | 337, 393, 700 |
| AluI | AGCT | 3 cut(s) | 337, 393, 700 |
| Alw21I | GWGCWC | 1 cut(s) | 668 |
| Alw26I | GTCTC | 1 cut(s) | 11 |
| Alw44I | GTGCAC | 1 cut(s) | 664 |
| AlwI | GGATC | 1 cut(s) | 409 |
| AoxI | GGCC | 4 cut(s) | 447, 549, 561, 786 |
| ApaLI | GTGCAC | 1 cut(s) | 664 |
| ApeKI | GCWGC | 1 cut(s) | 602 |
| ApoI | RAATTY | 1 cut(s) | 777 |
| AsiGI | ACCGGT | 1 cut(s) | 653 |
| AspLEI | GCGC | 3 cut(s) | 454, 800, 807 |
| AspS9I | GGNCC | 3 cut(s) | 258, 276, 787 |
| AsuHPI | GGTGA | 1 cut(s) | 668 |
| AvaII | GGWCC | 2 cut(s) | 258, 276 |
| BaeGI | GKGCMC | 1 cut(s) | 668 |
| BanI | GGYRCC | 1 cut(s) | 797 |
| BauI | CACGAG | 1 cut(s) | 117 |
| Bbv12I | GWGCWC | 1 cut(s) | 668 |
| BbvI | GCAGC | 1 cut(s) | 589 |
| BccI | CCATC | 1 cut(s) | 588 |
| BcoDI | GTCTC | 1 cut(s) | 11 |
| BfaI | CTAG | 1 cut(s) | 624 |
| BfoI | RGCGCY | 1 cut(s) | 801 |
| BfrI | CTTAAG | 1 cut(s) | 472 |
| BisI | GCNGC | 4 cut(s) | 357, 438, 450, 603 |
| BlsI | GCNGC | 4 cut(s) | 358, 439, 451, 604 |
| Bme18I | GGWCC | 2 cut(s) | 258, 276 |
| BmgT120I | GGNCC | 3 cut(s) | 258, 276, 787 |
| BmiI | GGNNCC | 2 cut(s) | 259, 799 |
| BoxI | GACNNNNGTC | 2 cut(s) | 91, 263 |
| BsaHI | GRCGYC | 1 cut(s) | 798 |
| BsaWI | WCCGGW | 1 cut(s) | 653 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 192, 285, 355, 577, 660 |
| Bse118I | RCCGGY | 1 cut(s) | 653 |
| Bse1I | ACTGG | 2 cut(s) | 114, 403 |
| Bse3DI | GCAATG | 1 cut(s) | 259 |
| BseGI | GGATG | 1 cut(s) | 599 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 192, 285, 355, 577, 660 |
| BseMI | GCAATG | 1 cut(s) | 259 |
| BseNI | ACTGG | 2 cut(s) | 114, 403 |
| BseRI | GAGGAG | 1 cut(s) | 779 |
| BseSI | GKGCMC | 1 cut(s) | 668 |
| BseXI | GCAGC | 1 cut(s) | 589 |
| Bsh1236I | CGCG | 2 cut(s) | 356, 452 |
| BshFI | GGCC | 4 cut(s) | 449, 551, 563, 788 |
| BshNI | GGYRCC | 1 cut(s) | 797 |
| BshTI | ACCGGT | 1 cut(s) | 653 |
| BsiHKAI | GWGCWC | 1 cut(s) | 668 |
| BsiSI | CCGG | 1 cut(s) | 654 |
| BslFI | GGGAC | 3 cut(s) | 271, 502, 554 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 192, 285, 355, 577, 660 |
| BsmAI | GTCTC | 1 cut(s) | 11 |
| BsmFI | GGGAC | 3 cut(s) | 271, 502, 554 |
| BsnI | GGCC | 4 cut(s) | 449, 551, 563, 788 |
| Bsp1286I | GDGCHC | 1 cut(s) | 668 |
| Bsp143I | GATC | 1 cut(s) | 401 |
| BspACI | CCGC | 5 cut(s) | 164, 356, 438, 450, 746 |
| BspANI | GGCC | 4 cut(s) | 449, 551, 563, 788 |
| BspFNI | CGCG | 2 cut(s) | 356, 452 |
| BspLI | GGNNCC | 2 cut(s) | 259, 799 |
| BspPI | GGATC | 1 cut(s) | 409 |
| BspT107I | GGYRCC | 1 cut(s) | 797 |
| BspTI | CTTAAG | 1 cut(s) | 472 |
| BsrDI | GCAATG | 1 cut(s) | 259 |
| BsrFI | RCCGGY | 1 cut(s) | 653 |
| BsrI | ACTGG | 2 cut(s) | 114, 403 |
| BssAI | RCCGGY | 1 cut(s) | 653 |
| BssMI | GATC | 1 cut(s) | 401 |
| BssNAI | GTATAC | 1 cut(s) | 651 |
| BssNI | GRCGYC | 1 cut(s) | 798 |
| BssSI | CACGAG | 1 cut(s) | 117 |
| Bst1107I | GTATAC | 1 cut(s) | 651 |
| Bst2BI | CACGAG | 1 cut(s) | 117 |
| Bst4CI | ACNGT | 2 cut(s) | 328, 670 |
| Bst6I | CTCTTC | 1 cut(s) | 685 |
| BstACI | GRCGYC | 1 cut(s) | 798 |
| BstAFI | CTTAAG | 1 cut(s) | 472 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 425 |
| BstC8I | GCNNGC | 2 cut(s) | 430, 600 |
| BstF5I | GGATG | 1 cut(s) | 599 |
| BstFNI | CGCG | 2 cut(s) | 356, 452 |
| BstH2I | RGCGCY | 1 cut(s) | 801 |
| BstHHI | GCGC | 3 cut(s) | 454, 800, 807 |
| BstKTI | GATC | 1 cut(s) | 404 |
| BstMAI | GTCTC | 1 cut(s) | 11 |
| BstMBI | GATC | 1 cut(s) | 401 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 425, 434, 446, 638, 804 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 91, 263 |
| BstSLI | GKGCMC | 1 cut(s) | 668 |
| BstUI | CGCG | 2 cut(s) | 356, 452 |
| BstV1I | GCAGC | 1 cut(s) | 589 |
| BstZ17I | GTATAC | 1 cut(s) | 651 |
| BsuRI | GGCC | 4 cut(s) | 449, 551, 563, 788 |
| BtsCI | GGATG | 1 cut(s) | 599 |
| BtsIMutI | CAGTG | 2 cut(s) | 107, 324 |
| Cac8I | GCNNGC | 2 cut(s) | 430, 600 |
| CfoI | GCGC | 3 cut(s) | 454, 800, 807 |
| Cfr10I | RCCGGY | 1 cut(s) | 653 |
| Cfr13I | GGNCC | 3 cut(s) | 258, 276, 787 |
| Csp6I | GTAC | 1 cut(s) | 396 |
| CspAI | ACCGGT | 1 cut(s) | 653 |
| CviAII | CATG | 5 cut(s) | 64, 405, 425, 741, 802 |
| CviJI | RGCY | 9 cut(s) | 131, 337, 393, 449, 551, 563, 584, 700, 788 |
| CviKI_1 | RGCY | 9 cut(s) | 131, 337, 393, 449, 551, 563, 584, 700, 788 |
| CviQI | GTAC | 1 cut(s) | 396 |
| DinI | GGCGCC | 1 cut(s) | 799 |
| DpnI | GATC | 1 cut(s) | 403 |
| DpnII | GATC | 1 cut(s) | 401 |
| DraI | TTTAAA | 1 cut(s) | 37 |
| EaeI | YGGCCR | 1 cut(s) | 447 |
| Eam1104I | CTCTTC | 1 cut(s) | 685 |
| EarI | CTCTTC | 1 cut(s) | 685 |
| EciI | GGCGGA | 1 cut(s) | 761 |
| Eco147I | AGGCCT | 1 cut(s) | 551 |
| Eco47I | GGWCC | 2 cut(s) | 258, 276 |
| EcoO109I | RGGNCCY | 2 cut(s) | 258, 787 |
| EgeI | GGCGCC | 1 cut(s) | 799 |
| EheI | GGCGCC | 1 cut(s) | 799 |
| FaeI | CATG | 5 cut(s) | 67, 408, 428, 744, 805 |
| FaqI | GGGAC | 3 cut(s) | 271, 502, 554 |
| FatI | CATG | 5 cut(s) | 63, 404, 424, 740, 801 |
| FblI | GTMKAC | 2 cut(s) | 135, 650 |
| Fnu4HI | GCNGC | 4 cut(s) | 357, 438, 450, 603 |
| FokI | GGATG | 1 cut(s) | 606 |
| Fsp4HI | GCNGC | 4 cut(s) | 357, 438, 450, 603 |
| FspBI | CTAG | 1 cut(s) | 624 |
| GlaI | GCGC | 3 cut(s) | 453, 799, 806 |
| GluI | GCNGC | 4 cut(s) | 357, 438, 450, 603 |
| HaeII | RGCGCY | 1 cut(s) | 801 |
| HaeIII | GGCC | 4 cut(s) | 449, 551, 563, 788 |
| HapII | CCGG | 1 cut(s) | 654 |
| HhaI | GCGC | 3 cut(s) | 454, 800, 807 |
| Hin1I | GRCGYC | 1 cut(s) | 798 |
| Hin1II | CATG | 5 cut(s) | 67, 408, 428, 744, 805 |
| Hin6I | GCGC | 3 cut(s) | 452, 798, 805 |
| HinP1I | GCGC | 3 cut(s) | 452, 798, 805 |
| HincII | GTYRAC | 1 cut(s) | 526 |
| HindII | GTYRAC | 1 cut(s) | 526 |
| HinfI | GANTC | 2 cut(s) | 289, 410 |
| HpaII | CCGG | 1 cut(s) | 654 |
| HphI | GGTGA | 1 cut(s) | 668 |
| Hpy166II | GTNNAC | 4 cut(s) | 136, 526, 651, 666 |
| Hpy188I | TCNGA | 2 cut(s) | 462, 775 |
| Hpy8I | GTNNAC | 4 cut(s) | 136, 526, 651, 666 |
| HpyAV | CCTTC | 6 cut(s) | 192, 355, 541, 553, 637, 703 |
| HpyCH4III | ACNGT | 2 cut(s) | 328, 670 |
| HpyCH4IV | ACGT | 1 cut(s) | 481 |
| HpyCH4V | TGCA | 2 cut(s) | 666, 783 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 425, 434, 446, 638, 804 |
| HpySE526I | ACGT | 1 cut(s) | 481 |
| Hsp92I | GRCGYC | 1 cut(s) | 798 |
| Hsp92II | CATG | 5 cut(s) | 67, 408, 428, 744, 805 |
| HspAI | GCGC | 3 cut(s) | 452, 798, 805 |
| KasI | GGCGCC | 1 cut(s) | 797 |
| Kzo9I | GATC | 1 cut(s) | 401 |
| LmnI | GCTCC | 1 cut(s) | 16 |
| LpnPI | CCDG | 5 cut(s) | 95, 323, 384, 662, 667 |
| Lsp1109I | GCAGC | 1 cut(s) | 589 |
| MaeI | CTAG | 1 cut(s) | 624 |
| MaeII | ACGT | 1 cut(s) | 481 |
| MaeIII | GTNAC | 1 cut(s) | 307 |
| MalI | GATC | 1 cut(s) | 403 |
| MboI | GATC | 1 cut(s) | 401 |
| MboII | GAAGA | 3 cut(s) | 608, 699, 702 |
| MhlI | GDGCHC | 1 cut(s) | 668 |
| MluCI | AATT | 2 cut(s) | 246, 777 |
| Mly113I | GGCGCC | 1 cut(s) | 798 |
| MmeI | TCCRAC | 1 cut(s) | 644 |
| MseI | TTAA | 2 cut(s) | 36, 473 |
| MspA1I | CMGCKG | 1 cut(s) | 164 |
| MspCI | CTTAAG | 1 cut(s) | 472 |
| MspI | CCGG | 1 cut(s) | 654 |
| MssI | GTTTAAAC | 1 cut(s) | 37 |
| MvnI | CGCG | 2 cut(s) | 356, 452 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 425, 434, 446, 638, 804 |
| NarI | GGCGCC | 1 cut(s) | 798 |
| NdeII | GATC | 1 cut(s) | 401 |
| NlaIII | CATG | 5 cut(s) | 67, 408, 428, 744, 805 |
| NlaIV | GGNNCC | 2 cut(s) | 259, 799 |
| PceI | AGGCCT | 1 cut(s) | 551 |
| PfeI | GAWTC | 2 cut(s) | 289, 410 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 285 |
| PinAI | ACCGGT | 1 cut(s) | 653 |
| PkrI | GCNGC | 4 cut(s) | 358, 439, 451, 604 |
| PluTI | GGCGCC | 1 cut(s) | 801 |
| PmeI | GTTTAAAC | 1 cut(s) | 37 |
| PpuMI | RGGWCCY | 1 cut(s) | 258 |
| PshAI | GACNNNNGTC | 2 cut(s) | 91, 263 |
| Psp5II | RGGWCCY | 1 cut(s) | 258 |
| PspN4I | GGNNCC | 2 cut(s) | 259, 799 |
| PspPI | GGNCC | 3 cut(s) | 258, 276, 787 |
| PspPPI | RGGWCCY | 1 cut(s) | 258 |
| RsaI | GTAC | 1 cut(s) | 397 |
| RsaNI | GTAC | 1 cut(s) | 396 |
| SaqAI | TTAA | 2 cut(s) | 36, 473 |
| SatI | GCNGC | 4 cut(s) | 357, 438, 450, 603 |
| Sau3AI | GATC | 1 cut(s) | 401 |
| Sau96I | GGNCC | 3 cut(s) | 258, 276, 787 |
| SduI | GDGCHC | 1 cut(s) | 668 |
| SfoI | GGCGCC | 1 cut(s) | 799 |
| SinI | GGWCC | 2 cut(s) | 258, 276 |
| SmlI | CTYRAG | 1 cut(s) | 472 |
| SmoI | CTYRAG | 1 cut(s) | 472 |
| Sse9I | AATT | 2 cut(s) | 246, 777 |
| SseBI | AGGCCT | 1 cut(s) | 551 |
| SsiI | CCGC | 5 cut(s) | 164, 356, 438, 450, 746 |
| SspDI | GGCGCC | 1 cut(s) | 797 |
| SspI | AATATT | 1 cut(s) | 613 |
| SspMI | CTAG | 1 cut(s) | 624 |
| StuI | AGGCCT | 1 cut(s) | 551 |
| TaaI | ACNGT | 2 cut(s) | 328, 670 |
| TaiI | ACGT | 1 cut(s) | 484 |
| TaqI | TCGA | 3 cut(s) | 71, 313, 513 |
| TasI | AATT | 2 cut(s) | 246, 777 |
| TatI | WGTACW | 1 cut(s) | 395 |
| TauI | GCSGC | 3 cut(s) | 359, 440, 452 |
| TfiI | GAWTC | 2 cut(s) | 289, 410 |
| Tru1I | TTAA | 2 cut(s) | 36, 473 |
| Tru9I | TTAA | 2 cut(s) | 36, 473 |
| TscAI | CASTG | 2 cut(s) | 114, 331 |
| TseI | GCWGC | 1 cut(s) | 602 |
| TspDTI | ATGAA | 1 cut(s) | 413 |
| TspRI | CASTG | 2 cut(s) | 114, 331 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 285 |
| Vha464I | CTTAAG | 1 cut(s) | 472 |
| VneI | GTGCAC | 1 cut(s) | 664 |
| VpaK11BI | GGWCC | 2 cut(s) | 258, 276 |
| XapI | RAATTY | 1 cut(s) | 777 |
| XmiI | GTMKAC | 2 cut(s) | 135, 650 |
| XspI | CTAG | 1 cut(s) | 624 |