Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 18 - 128 | 1.5e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 405 |
| AccBSI | CCGCTC | 1 cut(s) | 140 |
| AccI | GTMKAC | 1 cut(s) | 397 |
| AciI | CCGC | 1 cut(s) | 138 |
| AclWI | GGATC | 1 cut(s) | 116 |
| AcsI | RAATTY | 1 cut(s) | 37 |
| AcuI | CTGAAG | 1 cut(s) | 455 |
| AgsI | TTSAA | 2 cut(s) | 149, 215 |
| AjnI | CCWGG | 1 cut(s) | 319 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 141, 173, 180, 212 |
| AluBI | AGCT | 2 cut(s) | 110, 152 |
| AluI | AGCT | 2 cut(s) | 110, 152 |
| AlwI | GGATC | 1 cut(s) | 116 |
| ApeKI | GCWGC | 1 cut(s) | 362 |
| ApoI | RAATTY | 1 cut(s) | 37 |
| AspS9I | GGNCC | 1 cut(s) | 200 |
| AvaII | GGWCC | 1 cut(s) | 200 |
| BbvI | GCAGC | 1 cut(s) | 349 |
| BccI | CCATC | 3 cut(s) | 44, 251, 344 |
| BciT130I | CCWGG | 1 cut(s) | 321 |
| BclI | TGATCA | 1 cut(s) | 82 |
| BfmI | CTRYAG | 1 cut(s) | 172 |
| BisI | GCNGC | 1 cut(s) | 363 |
| BlsI | GCNGC | 1 cut(s) | 364 |
| Bme1390I | CCNGG | 1 cut(s) | 321 |
| Bme18I | GGWCC | 1 cut(s) | 200 |
| BmgT120I | GGNCC | 1 cut(s) | 200 |
| BmrFI | CCNGG | 1 cut(s) | 321 |
| BmsI | GCATC | 2 cut(s) | 109, 310 |
| BsaWI | WCCGGW | 1 cut(s) | 124 |
| BseBI | CCWGG | 1 cut(s) | 321 |
| BseGI | GGATG | 6 cut(s) | 26, 79, 243, 298, 355, 445 |
| BseMII | CTCAG | 1 cut(s) | 326 |
| BseXI | GCAGC | 1 cut(s) | 349 |
| BsiSI | CCGG | 2 cut(s) | 125, 203 |
| Bsp143I | GATC | 3 cut(s) | 31, 82, 121 |
| BspACI | CCGC | 1 cut(s) | 138 |
| BspCNI | CTCAG | 1 cut(s) | 325 |
| BspMAI | CTGCAG | 1 cut(s) | 176 |
| BspPI | GGATC | 1 cut(s) | 116 |
| BsrBI | CCGCTC | 1 cut(s) | 140 |
| BssMI | GATC | 3 cut(s) | 31, 82, 121 |
| Bst2UI | CCWGG | 1 cut(s) | 321 |
| BstC8I | GCNNGC | 3 cut(s) | 172, 240, 379 |
| BstDEI | CTNAG | 1 cut(s) | 312 |
| BstF5I | GGATG | 6 cut(s) | 26, 79, 243, 298, 355, 445 |
| BstKTI | GATC | 3 cut(s) | 34, 85, 124 |
| BstMBI | GATC | 3 cut(s) | 31, 82, 121 |
| BstNI | CCWGG | 1 cut(s) | 321 |
| BstSCI | CCNGG | 1 cut(s) | 319 |
| BstSFI | CTRYAG | 1 cut(s) | 172 |
| BstV1I | GCAGC | 1 cut(s) | 349 |
| BtsCI | GGATG | 6 cut(s) | 26, 79, 243, 298, 355, 445 |
| Cac8I | GCNNGC | 3 cut(s) | 172, 240, 379 |
| Cfr13I | GGNCC | 1 cut(s) | 200 |
| CviAII | CATG | 1 cut(s) | 359 |
| CviJI | RGCY | 4 cut(s) | 110, 152, 206, 242 |
| CviKI_1 | RGCY | 4 cut(s) | 110, 152, 206, 242 |
| DdeI | CTNAG | 1 cut(s) | 312 |
| DpnI | GATC | 3 cut(s) | 33, 84, 123 |
| DpnII | GATC | 3 cut(s) | 31, 82, 121 |
| Eco47I | GGWCC | 1 cut(s) | 200 |
| Eco57I | CTGAAG | 1 cut(s) | 455 |
| EcoRI | GAATTC | 1 cut(s) | 37 |
| EcoRII | CCWGG | 1 cut(s) | 319 |
| FaeI | CATG | 1 cut(s) | 362 |
| FatI | CATG | 1 cut(s) | 358 |
| FauI | CCCGC | 1 cut(s) | 145 |
| FbaI | TGATCA | 1 cut(s) | 82 |
| FblI | GTMKAC | 1 cut(s) | 397 |
| Fnu4HI | GCNGC | 1 cut(s) | 363 |
| FokI | GGATG | 6 cut(s) | 33, 86, 230, 305, 362, 452 |
| Fsp4HI | GCNGC | 1 cut(s) | 363 |
| GluI | GCNGC | 1 cut(s) | 363 |
| HapII | CCGG | 2 cut(s) | 125, 203 |
| Hin1II | CATG | 1 cut(s) | 362 |
| HindIII | AAGCTT | 1 cut(s) | 150 |
| HinfI | GANTC | 2 cut(s) | 221, 385 |
| HpaII | CCGG | 2 cut(s) | 125, 203 |
| Hpy166II | GTNNAC | 1 cut(s) | 398 |
| Hpy188I | TCNGA | 3 cut(s) | 36, 105, 435 |
| Hpy188III | TCNNGA | 1 cut(s) | 257 |
| Hpy8I | GTNNAC | 1 cut(s) | 398 |
| HpyAV | CCTTC | 1 cut(s) | 430 |
| HpyCH4V | TGCA | 4 cut(s) | 174, 238, 301, 327 |
| HpyF3I | CTNAG | 1 cut(s) | 312 |
| Hsp92II | CATG | 1 cut(s) | 362 |
| Ksp22I | TGATCA | 1 cut(s) | 82 |
| Kzo9I | GATC | 3 cut(s) | 31, 82, 121 |
| LpnPI | CCDG | 7 cut(s) | 138, 176, 184, 216, 306, 333, 367 |
| Lsp1109I | GCAGC | 1 cut(s) | 349 |
| LweI | GCATC | 2 cut(s) | 109, 310 |
| MalI | GATC | 3 cut(s) | 33, 84, 123 |
| MbiI | CCGCTC | 1 cut(s) | 140 |
| MboI | GATC | 3 cut(s) | 31, 82, 121 |
| MluCI | AATT | 3 cut(s) | 37, 252, 460 |
| MlyI | GAGTC | 2 cut(s) | 215, 379 |
| MnlI | CCTC | 1 cut(s) | 283 |
| MslI | CAYNNNNRTG | 2 cut(s) | 48, 261 |
| MspI | CCGG | 2 cut(s) | 125, 203 |
| MspR9I | CCNGG | 1 cut(s) | 321 |
| MvaI | CCWGG | 1 cut(s) | 321 |
| NdeII | GATC | 3 cut(s) | 31, 82, 121 |
| NlaIII | CATG | 1 cut(s) | 362 |
| PkrI | GCNGC | 1 cut(s) | 364 |
| PleI | GAGTC | 2 cut(s) | 215, 379 |
| PpsI | GAGTC | 2 cut(s) | 215, 379 |
| PsiI | TTATAA | 1 cut(s) | 405 |
| Psp6I | CCWGG | 1 cut(s) | 319 |
| PspGI | CCWGG | 1 cut(s) | 319 |
| PspPI | GGNCC | 1 cut(s) | 200 |
| PstI | CTGCAG | 1 cut(s) | 176 |
| RseI | CAYNNNNRTG | 2 cut(s) | 48, 261 |
| SatI | GCNGC | 1 cut(s) | 363 |
| Sau3AI | GATC | 3 cut(s) | 31, 82, 121 |
| Sau96I | GGNCC | 1 cut(s) | 200 |
| SchI | GAGTC | 2 cut(s) | 215, 379 |
| ScrFI | CCNGG | 1 cut(s) | 321 |
| SetI | ASST | 4 cut(s) | 112, 154, 325, 403 |
| SfaNI | GCATC | 2 cut(s) | 109, 310 |
| SfcI | CTRYAG | 1 cut(s) | 172 |
| SinI | GGWCC | 1 cut(s) | 200 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 48, 261 |
| Sse9I | AATT | 3 cut(s) | 37, 252, 460 |
| SsiI | CCGC | 1 cut(s) | 138 |
| StyD4I | CCNGG | 1 cut(s) | 319 |
| TasI | AATT | 3 cut(s) | 37, 252, 460 |
| TseI | GCWGC | 1 cut(s) | 362 |
| VpaK11BI | GGWCC | 1 cut(s) | 200 |
| XapI | RAATTY | 1 cut(s) | 37 |
| XmiI | GTMKAC | 1 cut(s) | 397 |