Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 585 |
| AclI | AACGTT | 1 cut(s) | 121 |
| AclWI | GGATC | 4 cut(s) | 84, 289, 1565, 1646 |
| AcoI | YGGCCR | 1 cut(s) | 1707 |
| AcyI | GRCGYC | 1 cut(s) | 435 |
| AfaI | GTAC | 3 cut(s) | 683, 706, 968 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 62, 1158, 1905 |
| AflIII | ACRYGT | 1 cut(s) | 822 |
| AgsI | TTSAA | 8 cut(s) | 253, 306, 555, 817, 1088, 1502, 1638, 1826 |
| AhlI | ACTAGT | 1 cut(s) | 1270 |
| AjnI | CCWGG | 2 cut(s) | 1151, 1538 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1406, 1438 |
| Alw21I | GWGCWC | 1 cut(s) | 1873 |
| Alw26I | GTCTC | 1 cut(s) | 269 |
| AlwI | GGATC | 4 cut(s) | 84, 289, 1565, 1646 |
| AoxI | GGCC | 1 cut(s) | 1707 |
| ApeKI | GCWGC | 3 cut(s) | 10, 581, 1727 |
| AseI | ATTAAT | 1 cut(s) | 1007 |
| AspLEI | GCGC | 1 cut(s) | 586 |
| AsuC2I | CCSGG | 1 cut(s) | 299 |
| AsuHPI | GGTGA | 5 cut(s) | 77, 119, 1438, 1661, 1793 |
| AsuNHI | GCTAGC | 1 cut(s) | 1228 |
| BalI | TGGCCA | 1 cut(s) | 1709 |
| BanII | GRGCYC | 1 cut(s) | 1313 |
| BauI | CACGAG | 1 cut(s) | 1604 |
| Bbv12I | GWGCWC | 1 cut(s) | 1873 |
| BbvI | GCAGC | 3 cut(s) | 22, 568, 1714 |
| BccI | CCATC | 4 cut(s) | 566, 652, 1351, 1897 |
| BciT130I | CCWGG | 2 cut(s) | 1153, 1540 |
| BciVI | GTATCC | 1 cut(s) | 1443 |
| BclI | TGATCA | 1 cut(s) | 858 |
| BcnI | CCSGG | 1 cut(s) | 299 |
| BcoDI | GTCTC | 1 cut(s) | 269 |
| BcuI | ACTAGT | 1 cut(s) | 1270 |
| BfaI | CTAG | 5 cut(s) | 840, 1229, 1271, 1475, 1865 |
| BfmI | CTRYAG | 1 cut(s) | 239 |
| BfuI | GTATCC | 1 cut(s) | 1443 |
| BglII | AGATCT | 1 cut(s) | 1431 |
| BisI | GCNGC | 3 cut(s) | 11, 582, 1728 |
| BlsI | GCNGC | 3 cut(s) | 12, 583, 1729 |
| Bme1390I | CCNGG | 3 cut(s) | 299, 1153, 1540 |
| BmrFI | CCNGG | 3 cut(s) | 299, 1153, 1540 |
| BmsI | GCATC | 4 cut(s) | 556, 1168, 1210, 1286 |
| BmtI | GCTAGC | 1 cut(s) | 1232 |
| BoxI | GACNNNNGTC | 1 cut(s) | 947 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 248, 280, 1714, 1746 |
| BpuMI | CCSGG | 1 cut(s) | 299 |
| BsaHI | GRCGYC | 1 cut(s) | 435 |
| BsaJI | CCNNGG | 5 cut(s) | 343, 1152, 1304, 1539, 1812 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 62, 1158, 1905 |
| Bse1I | ACTGG | 3 cut(s) | 22, 56, 109 |
| Bse3DI | GCAATG | 3 cut(s) | 356, 660, 679 |
| BseBI | CCWGG | 2 cut(s) | 1153, 1540 |
| BseDI | CCNNGG | 5 cut(s) | 343, 1152, 1304, 1539, 1812 |
| BseGI | GGATG | 7 cut(s) | 54, 547, 1167, 1300, 1339, 1447, 1892 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 62, 1158, 1905 |
| BseMI | GCAATG | 3 cut(s) | 356, 660, 679 |
| BseMII | CTCAG | 2 cut(s) | 147, 408 |
| BseNI | ACTGG | 3 cut(s) | 22, 56, 109 |
| BseRI | GAGGAG | 1 cut(s) | 1863 |
| BseXI | GCAGC | 3 cut(s) | 22, 568, 1714 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1379 |
| BshFI | GGCC | 1 cut(s) | 1709 |
| BsiEI | CGRYCG | 1 cut(s) | 1379 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1873 |
| BsiSI | CCGG | 1 cut(s) | 299 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 62, 1158, 1905 |
| BsmAI | GTCTC | 1 cut(s) | 269 |
| BsmI | GAATGC | 2 cut(s) | 127, 1678 |
| BsnI | GGCC | 1 cut(s) | 1709 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1313, 1873 |
| Bsp1407I | TGTACA | 1 cut(s) | 681 |
| Bsp19I | CCATGG | 1 cut(s) | 1304 |
| BspANI | GGCC | 1 cut(s) | 1709 |
| BspCNI | CTCAG | 2 cut(s) | 148, 409 |
| BspOI | GCTAGC | 1 cut(s) | 1232 |
| BspPI | GGATC | 4 cut(s) | 84, 289, 1565, 1646 |
| BsrDI | GCAATG | 3 cut(s) | 356, 660, 679 |
| BsrGI | TGTACA | 1 cut(s) | 681 |
| BsrI | ACTGG | 3 cut(s) | 22, 56, 109 |
| BssECI | CCNNGG | 5 cut(s) | 343, 1152, 1304, 1539, 1812 |
| BssNI | GRCGYC | 1 cut(s) | 435 |
| BssSI | CACGAG | 1 cut(s) | 1604 |
| BssT1I | CCWWGG | 2 cut(s) | 343, 1304 |
| Bst2BI | CACGAG | 1 cut(s) | 1604 |
| Bst2UI | CCWGG | 2 cut(s) | 1153, 1540 |
| Bst4CI | ACNGT | 2 cut(s) | 243, 1555 |
| Bst6I | CTCTTC | 2 cut(s) | 313, 1124 |
| BstACI | GRCGYC | 1 cut(s) | 435 |
| BstAUI | TGTACA | 1 cut(s) | 681 |
| BstC8I | GCNNGC | 2 cut(s) | 1230, 1564 |
| BstDEI | CTNAG | 4 cut(s) | 156, 417, 499, 696 |
| BstDSI | CCRYGG | 2 cut(s) | 1304, 1812 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1156 |
| BstF5I | GGATG | 7 cut(s) | 54, 547, 1167, 1300, 1339, 1447, 1892 |
| BstHHI | GCGC | 1 cut(s) | 586 |
| BstMAI | GTCTC | 1 cut(s) | 269 |
| BstMCI | CGRYCG | 1 cut(s) | 1379 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 836, 1229 |
| BstNI | CCWGG | 2 cut(s) | 1153, 1540 |
| BstNSI | RCATGY | 4 cut(s) | 425, 463, 948, 1528 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 947 |
| BstSCI | CCNGG | 3 cut(s) | 297, 1151, 1538 |
| BstSFI | CTRYAG | 1 cut(s) | 239 |
| BstV1I | GCAGC | 3 cut(s) | 22, 568, 1714 |
| BstX2I | RGATCY | 1 cut(s) | 1431 |
| BstYI | RGATCY | 1 cut(s) | 1431 |
| BsuI | GTATCC | 1 cut(s) | 1443 |
| BsuRI | GGCC | 1 cut(s) | 1709 |
| BtgI | CCRYGG | 2 cut(s) | 1304, 1812 |
| BtgZI | GCGATG | 1 cut(s) | 1092 |
| BtsCI | GGATG | 7 cut(s) | 54, 547, 1167, 1300, 1339, 1447, 1892 |
| Cac8I | GCNNGC | 2 cut(s) | 1230, 1564 |
| CfoI | GCGC | 1 cut(s) | 586 |
| CseI | GACGC | 3 cut(s) | 137, 443, 937 |
| Csp6I | GTAC | 3 cut(s) | 682, 705, 967 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1226, 1261, 1686, 1721 |
| CviQI | GTAC | 3 cut(s) | 682, 705, 967 |
| DdeI | CTNAG | 4 cut(s) | 156, 417, 499, 696 |
| DraI | TTTAAA | 1 cut(s) | 1288 |
| EaeI | YGGCCR | 1 cut(s) | 1707 |
| Eam1104I | CTCTTC | 2 cut(s) | 313, 1124 |
| EarI | CTCTTC | 2 cut(s) | 313, 1124 |
| Eco130I | CCWWGG | 2 cut(s) | 343, 1304 |
| Eco24I | GRGCYC | 1 cut(s) | 1313 |
| Eco32I | GATATC | 1 cut(s) | 1546 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1156 |
| EcoRII | CCWGG | 2 cut(s) | 1151, 1538 |
| EcoRV | GATATC | 1 cut(s) | 1546 |
| EcoT14I | CCWWGG | 2 cut(s) | 343, 1304 |
| EcoT22I | ATGCAT | 1 cut(s) | 549 |
| EcoT38I | GRGCYC | 1 cut(s) | 1313 |
| ErhI | CCWWGG | 2 cut(s) | 343, 1304 |
| FbaI | TGATCA | 1 cut(s) | 858 |
| Fnu4HI | GCNGC | 3 cut(s) | 11, 582, 1728 |
| FokI | GGATG | 7 cut(s) | 61, 534, 1174, 1287, 1346, 1454, 1879 |
| FriOI | GRGCYC | 1 cut(s) | 1313 |
| Fsp4HI | GCNGC | 3 cut(s) | 11, 582, 1728 |
| FspBI | CTAG | 5 cut(s) | 840, 1229, 1271, 1475, 1865 |
| FspI | TGCGCA | 1 cut(s) | 585 |
| GlaI | GCGC | 1 cut(s) | 585 |
| GluI | GCNGC | 3 cut(s) | 11, 582, 1728 |
| HaeIII | GGCC | 1 cut(s) | 1709 |
| HapII | CCGG | 1 cut(s) | 299 |
| HgaI | GACGC | 3 cut(s) | 137, 443, 937 |
| HhaI | GCGC | 1 cut(s) | 586 |
| Hin1I | GRCGYC | 1 cut(s) | 435 |
| Hin6I | GCGC | 1 cut(s) | 584 |
| HinP1I | GCGC | 1 cut(s) | 584 |
| HincII | GTYRAC | 1 cut(s) | 291 |
| HindII | GTYRAC | 1 cut(s) | 291 |
| HindIII | AAGCTT | 1 cut(s) | 789 |
| HinfI | GANTC | 8 cut(s) | 52, 287, 302, 515, 590, 931, 1265, 1808 |
| HpaII | CCGG | 1 cut(s) | 299 |
| HphI | GGTGA | 5 cut(s) | 77, 119, 1438, 1661, 1793 |
| Hpy166II | GTNNAC | 2 cut(s) | 291, 682 |
| Hpy188I | TCNGA | 8 cut(s) | 90, 418, 520, 621, 649, 851, 1438, 1807 |
| Hpy8I | GTNNAC | 2 cut(s) | 291, 682 |
| HpyAV | CCTTC | 6 cut(s) | 226, 319, 523, 561, 1094, 1903 |
| HpyCH4III | ACNGT | 2 cut(s) | 243, 1555 |
| HpyCH4IV | ACGT | 2 cut(s) | 121, 822 |
| HpyCH4V | TGCA | 9 cut(s) | 10, 463, 547, 665, 672, 868, 1277, 1528, 1661 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 836, 1229 |
| HpyF3I | CTNAG | 4 cut(s) | 156, 417, 499, 696 |
| HpySE526I | ACGT | 2 cut(s) | 121, 822 |
| Hsp92I | GRCGYC | 1 cut(s) | 435 |
| HspAI | GCGC | 1 cut(s) | 584 |
| Ksp22I | TGATCA | 1 cut(s) | 858 |
| LmnI | GCTCC | 2 cut(s) | 742, 1876 |
| Lsp1109I | GCAGC | 3 cut(s) | 22, 568, 1714 |
| LweI | GCATC | 4 cut(s) | 556, 1168, 1210, 1286 |
| MaeI | CTAG | 5 cut(s) | 840, 1229, 1271, 1475, 1865 |
| MaeII | ACGT | 2 cut(s) | 121, 822 |
| MaeIII | GTNAC | 7 cut(s) | 211, 258, 431, 639, 940, 1383, 1606 |
| MboII | GAAGA | 5 cut(s) | 330, 918, 1141, 1147, 1441 |
| MflI | RGATCY | 1 cut(s) | 1431 |
| MhlI | GDGCHC | 2 cut(s) | 1313, 1873 |
| MlsI | TGGCCA | 1 cut(s) | 1709 |
| MluNI | TGGCCA | 1 cut(s) | 1709 |
| MlyI | GAGTC | 1 cut(s) | 296 |
| MmeI | TCCRAC | 4 cut(s) | 26, 68, 166, 1700 |
| MnlI | CCTC | 9 cut(s) | 202, 217, 364, 703, 1125, 1398, 1432, 1884, 1906 |
| Mox20I | TGGCCA | 1 cut(s) | 1709 |
| Mph1103I | ATGCAT | 1 cut(s) | 549 |
| MscI | TGGCCA | 1 cut(s) | 1709 |
| MseI | TTAA | 9 cut(s) | 270, 336, 653, 1007, 1173, 1197, 1287, 1521, 1787 |
| MslI | CAYNNNNRTG | 3 cut(s) | 105, 132, 990 |
| Msp20I | TGGCCA | 1 cut(s) | 1709 |
| MspI | CCGG | 1 cut(s) | 299 |
| MspR9I | CCNGG | 3 cut(s) | 299, 1153, 1540 |
| Mva1269I | GAATGC | 2 cut(s) | 127, 1678 |
| MvaI | CCWGG | 2 cut(s) | 1153, 1540 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 836, 1229 |
| NciI | CCSGG | 1 cut(s) | 299 |
| NcoI | CCATGG | 1 cut(s) | 1304 |
| NheI | GCTAGC | 1 cut(s) | 1228 |
| NmuCI | GTSAC | 3 cut(s) | 431, 940, 1606 |
| NsbI | TGCGCA | 1 cut(s) | 585 |
| NsiI | ATGCAT | 1 cut(s) | 549 |
| NspI | RCATGY | 4 cut(s) | 425, 463, 948, 1528 |
| PctI | GAATGC | 2 cut(s) | 127, 1678 |
| PfeI | GAWTC | 7 cut(s) | 52, 302, 515, 590, 931, 1265, 1808 |
| PfoI | TCCNGGA | 1 cut(s) | 297 |
| PkrI | GCNGC | 3 cut(s) | 12, 583, 1729 |
| Ple19I | CGATCG | 1 cut(s) | 1379 |
| PleI | GAGTC | 1 cut(s) | 295 |
| PpsI | GAGTC | 1 cut(s) | 295 |
| PshAI | GACNNNNGTC | 1 cut(s) | 947 |
| PshBI | ATTAAT | 1 cut(s) | 1007 |
| Psp1406I | AACGTT | 1 cut(s) | 121 |
| Psp6I | CCWGG | 2 cut(s) | 1151, 1538 |
| PspGI | CCWGG | 2 cut(s) | 1151, 1538 |
| PsuI | RGATCY | 1 cut(s) | 1431 |
| PvuI | CGATCG | 1 cut(s) | 1379 |
| RsaI | GTAC | 3 cut(s) | 683, 706, 968 |
| RsaNI | GTAC | 3 cut(s) | 682, 705, 967 |
| RseI | CAYNNNNRTG | 3 cut(s) | 105, 132, 990 |
| SaqAI | TTAA | 9 cut(s) | 270, 336, 653, 1007, 1173, 1197, 1287, 1521, 1787 |
| SatI | GCNGC | 3 cut(s) | 11, 582, 1728 |
| SchI | GAGTC | 1 cut(s) | 296 |
| ScrFI | CCNGG | 3 cut(s) | 299, 1153, 1540 |
| SduI | GDGCHC | 2 cut(s) | 1313, 1873 |
| SfaNI | GCATC | 4 cut(s) | 556, 1168, 1210, 1286 |
| SfcI | CTRYAG | 1 cut(s) | 239 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 105, 132, 990 |
| SpeI | ACTAGT | 1 cut(s) | 1270 |
| SspMI | CTAG | 5 cut(s) | 840, 1229, 1271, 1475, 1865 |
| StyD4I | CCNGG | 3 cut(s) | 297, 1151, 1538 |
| StyI | CCWWGG | 2 cut(s) | 343, 1304 |
| TaaI | ACNGT | 2 cut(s) | 243, 1555 |
| TaiI | ACGT | 2 cut(s) | 124, 825 |
| TaqI | TCGA | 4 cut(s) | 929, 1375, 1750, 1837 |
| TatI | WGTACW | 2 cut(s) | 681, 966 |
| TfiI | GAWTC | 7 cut(s) | 52, 302, 515, 590, 931, 1265, 1808 |
| Tru1I | TTAA | 9 cut(s) | 270, 336, 653, 1007, 1173, 1197, 1287, 1521, 1787 |
| Tru9I | TTAA | 9 cut(s) | 270, 336, 653, 1007, 1173, 1197, 1287, 1521, 1787 |
| TseFI | GTSAC | 3 cut(s) | 431, 940, 1606 |
| TseI | GCWGC | 3 cut(s) | 10, 581, 1727 |
| Tsp45I | GTSAC | 3 cut(s) | 431, 940, 1606 |
| TspDTI | ATGAA | 7 cut(s) | 176, 500, 737, 974, 1061, 1341, 1547 |
| TspGWI | ACGGA | 2 cut(s) | 244, 1801 |
| VspI | ATTAAT | 1 cut(s) | 1007 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1156 |
| XceI | RCATGY | 4 cut(s) | 425, 463, 948, 1528 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1350 |
| XspI | CTAG | 5 cut(s) | 840, 1229, 1271, 1475, 1865 |
| Zsp2I | ATGCAT | 1 cut(s) | 549 |